Wall clock time and date at job start Sun Mar 7 2021 04:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30272 * 126.28227 * 2 1 4 4 N 1.28668 * 109.37779 * 179.72927 * 3 2 1 5 5 C 1.30269 * 109.38462 * 0.43884 * 4 3 2 6 6 C 1.50698 * 126.28495 * 179.82674 * 5 4 3 7 7 H 1.08995 * 112.84895 * 190.88359 * 6 5 4 8 8 C 1.53777 * 113.61433 * 322.19931 * 6 5 4 9 9 C 1.53774 * 87.08178 * 139.97936 * 8 6 5 10 10 H 1.09001 * 113.69016 * 89.12830 * 9 8 6 11 11 N 1.46506 * 113.61016 * 220.01422 * 9 8 6 12 12 C 1.34773 * 119.99968 * 252.49438 * 11 9 8 13 13 O 1.21283 * 120.00360 * 359.73034 * 12 11 9 14 14 C 1.50706 * 120.00081 * 180.02562 * 12 11 9 15 15 C 1.53545 * 109.81742 * 278.86550 * 14 12 11 16 16 C 1.53039 * 108.55777 * 179.57119 * 15 14 12 17 17 C 1.50205 * 110.36325 * 49.47221 * 16 15 14 18 18 C 1.50703 * 118.54597 * 160.01196 * 17 16 15 19 19 O 1.42898 * 109.47149 * 299.97477 * 18 17 16 20 20 Si 1.86299 * 109.47007 * 179.97438 * 18 17 16 21 21 C 1.31112 * 122.91025 * 339.98716 * 17 16 15 22 22 N 1.38925 * 121.84510 * 0.40758 * 21 17 16 23 23 C 1.53773 * 87.08241 * 334.56489 * 9 8 6 24 24 O 1.34359 * 126.28063 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47643 * 270.00546 * 1 2 3 26 26 H 1.08999 * 109.47117 * 30.00755 * 1 2 3 27 27 H 1.09001 * 109.47065 * 150.00330 * 1 2 3 28 28 H 1.08997 * 113.62021 * 25.42130 * 8 6 5 29 29 H 1.09005 * 113.60822 * 254.52794 * 8 6 5 30 30 H 0.96998 * 119.99507 * 72.50293 * 11 9 8 31 31 H 1.09005 * 109.81209 * 39.72307 * 14 12 11 32 32 H 1.08994 * 109.62087 * 299.22378 * 15 14 12 33 33 H 1.08998 * 109.62508 * 59.78696 * 15 14 12 34 34 H 1.08994 * 109.27471 * 289.22096 * 16 15 14 35 35 H 1.09004 * 109.20039 * 169.67372 * 16 15 14 36 36 H 1.08996 * 109.47305 * 59.97834 * 18 17 16 37 37 H 0.96698 * 114.00383 * 179.97438 * 19 18 17 38 38 H 1.48501 * 110.00084 * 298.67658 * 20 18 17 39 39 H 1.48501 * 110.00416 * 59.99778 * 20 18 17 40 40 H 1.07997 * 119.08048 * 180.38200 * 21 17 16 41 41 H 0.97003 * 120.55966 * 166.65905 * 22 21 17 42 42 H 1.09004 * 113.61475 * 139.98321 * 23 9 8 43 43 H 1.08998 * 113.61449 * 270.80119 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6760 0.0057 5 6 3.5654 -0.6254 0.0002 6 6 4.8176 -1.4638 0.0003 7 1 4.6212 -2.5181 -0.1946 8 6 5.9515 -0.8777 -0.8573 9 6 6.9156 -1.3181 0.2567 10 1 7.2949 -2.3323 0.1320 11 7 7.9748 -0.3448 0.5347 12 6 9.2420 -0.6006 0.1535 13 8 9.5064 -1.6386 -0.4153 14 6 10.3317 0.4003 0.4400 15 6 10.3092 1.5117 -0.6191 16 6 11.4179 2.5157 -0.2952 17 6 12.7171 1.8007 -0.0566 18 6 14.0009 2.5811 -0.1750 19 8 14.1153 3.1121 -1.4967 20 14 15.4454 1.4563 0.1696 21 6 12.7838 0.5278 0.2505 22 7 11.6444 -0.2581 0.3698 23 6 5.7214 -1.2210 1.2206 24 8 2.3021 -1.0831 0.0005 25 1 -0.3634 0.0001 1.0276 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 5.8914 0.2036 -0.9808 29 1 6.1032 -1.4044 -1.7996 30 1 7.7641 0.4835 0.9932 31 1 10.1866 0.8309 1.4308 32 1 10.4833 1.0812 -1.6052 33 1 9.3422 2.0145 -0.6017 34 1 11.1453 3.0766 0.5987 35 1 11.5335 3.2045 -1.1321 36 1 13.9970 3.3986 0.5459 37 1 14.9198 3.6278 -1.6452 38 1 15.3550 0.9226 1.5525 39 1 15.4621 0.3373 -0.8065 40 1 13.7515 0.0776 0.4151 41 1 11.7138 -1.2250 0.4057 42 1 5.6874 -2.0249 1.9560 43 1 5.5993 -0.2340 1.6665 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_15413834.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:07:01 Heat of formation + Delta-G solvation = 16.960732 kcal Electronic energy + Delta-G solvation = -26506.223921 eV Core-core repulsion = 22556.043278 eV Total energy + Delta-G solvation = -3950.180643 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.34570 -41.67947 -40.32684 -39.14288 -37.36031 -37.28947 -35.11290 -33.74578 -33.36060 -32.97926 -29.74272 -27.92500 -26.93944 -26.55398 -25.42713 -24.08932 -23.64465 -23.20523 -21.80847 -21.00455 -19.27158 -19.16874 -18.61922 -18.52533 -18.20243 -17.67506 -17.38201 -16.63539 -16.40282 -16.04311 -15.73584 -15.55363 -15.32467 -14.87661 -14.80224 -14.50202 -14.31696 -14.19840 -13.86373 -13.71815 -13.65379 -13.61828 -13.45122 -13.34253 -13.14560 -13.00401 -12.75085 -12.49072 -12.37389 -12.12958 -11.97707 -11.90701 -11.61459 -11.40354 -10.93480 -10.51318 -10.23309 -10.13867 -8.56972 -4.91920 0.03532 1.14928 1.16944 1.21857 1.31847 1.40375 1.63522 1.82512 1.98409 2.49031 2.74523 3.15796 3.31418 3.41541 3.50606 3.53790 3.60189 3.66498 3.69968 3.89322 3.98380 3.98958 4.16611 4.28089 4.33169 4.38083 4.45468 4.51300 4.52871 4.57644 4.58942 4.62904 4.67157 4.70997 4.77373 4.83748 4.97246 4.99775 5.03421 5.11159 5.19342 5.38242 5.47544 6.10356 6.34944 6.63736 7.00093 7.02755 7.17898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.168 3.832 3 N -0.331 5.331 4 N -0.311 5.311 5 C 0.175 3.825 6 C -0.019 4.019 7 H 0.149 0.851 8 C -0.134 4.134 9 C 0.129 3.871 10 H 0.119 0.881 11 N -0.699 5.699 12 C 0.518 3.482 13 O -0.571 6.571 14 C 0.137 3.863 15 C -0.122 4.122 16 C -0.053 4.053 17 C -0.242 4.242 18 C -0.053 4.053 19 O -0.568 6.568 20 Si 0.754 3.246 21 C 0.115 3.885 22 N -0.740 5.740 23 C -0.116 4.116 24 O -0.232 6.232 25 H 0.118 0.882 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.419 0.581 31 H 0.115 0.885 32 H 0.051 0.949 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.398 0.602 38 H -0.289 1.289 39 H -0.306 1.306 40 H 0.116 0.884 41 H 0.405 0.595 42 H 0.107 0.893 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.313 1.224 3.733 4.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.043 4.043 3 N -0.177 5.177 4 N -0.156 5.156 5 C -0.037 4.037 6 C -0.040 4.040 7 H 0.166 0.834 8 C -0.173 4.173 9 C 0.024 3.976 10 H 0.137 0.863 11 N -0.351 5.351 12 C 0.304 3.696 13 O -0.449 6.449 14 C 0.029 3.971 15 C -0.161 4.161 16 C -0.090 4.090 17 C -0.253 4.253 18 C -0.164 4.164 19 O -0.377 6.377 20 Si 0.662 3.338 21 C -0.005 4.005 22 N -0.373 5.373 23 C -0.155 4.155 24 O -0.112 6.112 25 H 0.136 0.864 26 H 0.134 0.866 27 H 0.131 0.869 28 H 0.112 0.888 29 H 0.104 0.896 30 H 0.257 0.743 31 H 0.133 0.867 32 H 0.070 0.930 33 H 0.123 0.877 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.248 0.752 38 H -0.217 1.217 39 H -0.235 1.235 40 H 0.133 0.867 41 H 0.241 0.759 42 H 0.126 0.874 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.187 0.734 3.503 4.195 hybrid contribution -0.890 -1.293 0.024 1.570 sum -3.077 -0.559 3.528 4.714 Atomic orbital electron populations 1.20706 0.76957 1.07223 1.06913 1.28985 0.99363 0.78845 0.97110 1.74374 0.96525 1.27021 1.19829 1.74221 1.12696 1.10180 1.18515 1.28229 0.85392 0.91412 0.98617 1.21229 0.82725 0.99074 1.00937 0.83366 1.23572 0.92247 1.02723 0.98756 1.22363 0.85251 0.94472 0.95547 0.86312 1.45767 1.06474 1.23281 1.59534 1.20761 0.84372 0.86869 0.77576 1.90719 1.83036 1.28326 1.42837 1.21160 0.82159 0.92030 1.01787 1.21845 1.01262 0.95727 0.97229 1.19991 0.89938 0.96697 1.02381 1.20457 0.96727 0.94643 1.13426 1.24487 1.01163 1.03156 0.87609 1.86434 1.48437 1.73423 1.29411 0.94639 0.84370 0.79156 0.75629 1.20183 0.89441 0.91967 0.98882 1.44270 1.02495 1.08150 1.82405 1.23428 0.91246 1.05083 0.95760 1.84813 1.17775 1.38697 1.69890 0.86372 0.86561 0.86868 0.88767 0.89601 0.74319 0.86732 0.93044 0.87727 0.89744 0.90635 0.89884 0.75225 1.21670 1.23452 0.86687 0.75852 0.87443 0.88325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.44 10.51 71.24 0.75 1.19 16 2 C 0.17 0.52 8.48 88.34 0.75 1.27 16 3 N -0.33 -3.10 12.22 -165.50 -2.02 -5.12 16 4 N -0.31 -2.64 11.84 -165.50 -1.96 -4.60 16 5 C 0.18 0.59 7.53 88.34 0.67 1.25 16 6 C -0.02 0.07 4.29 -11.02 -0.05 0.03 16 7 H 0.15 -1.19 8.14 -2.39 -0.02 -1.21 16 8 C -0.13 0.35 7.42 31.12 0.23 0.58 16 9 C 0.13 -0.49 4.24 45.51 0.19 -0.30 16 10 H 0.12 -0.22 7.46 -2.39 -0.02 -0.23 16 11 N -0.70 2.53 5.35 -440.04 -2.36 0.18 16 12 C 0.52 1.30 7.09 87.66 0.62 1.93 16 13 O -0.57 -6.16 15.68 -3.04 -0.05 -6.21 16 14 C 0.14 0.11 3.36 44.33 0.15 0.26 16 15 C -0.12 -0.12 5.48 30.79 0.17 0.04 16 16 C -0.05 -0.11 5.83 29.71 0.17 0.07 16 17 C -0.24 -1.22 5.48 -16.75 -0.09 -1.31 16 18 C -0.05 -0.06 2.82 71.24 0.20 0.15 16 19 O -0.57 -1.06 12.52 -148.98 -1.86 -2.93 16 20 Si 0.75 0.08 29.68 68.60 2.04 2.12 16 21 C 0.12 0.75 9.63 83.42 0.80 1.55 16 22 N -0.74 -3.94 5.47 -328.99 -1.80 -5.74 16 23 C -0.12 0.74 7.38 31.12 0.23 0.97 16 24 O -0.23 -0.85 10.87 -3.65 -0.04 -0.89 16 25 H 0.12 -1.22 8.14 -2.39 -0.02 -1.24 16 26 H 0.12 -0.99 8.14 -2.39 -0.02 -1.01 16 27 H 0.11 -1.22 8.14 -2.39 -0.02 -1.24 16 28 H 0.09 -0.01 7.78 -2.39 -0.02 -0.03 16 29 H 0.09 -0.19 8.14 -2.38 -0.02 -0.21 16 30 H 0.42 -3.58 8.73 -92.71 -0.81 -4.39 16 31 H 0.12 -0.45 8.14 -2.38 -0.02 -0.47 16 32 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.10 -0.42 8.14 -2.39 -0.02 -0.43 16 34 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 35 H 0.08 0.30 7.83 -2.38 -0.02 0.28 16 36 H 0.08 -0.23 7.96 -2.39 -0.02 -0.25 16 37 H 0.40 -3.31 8.74 -74.06 -0.65 -3.96 16 38 H -0.29 -1.44 7.11 99.48 0.71 -0.73 16 39 H -0.31 -2.67 7.11 99.48 0.71 -1.97 16 40 H 0.12 0.77 4.37 -2.91 -0.01 0.76 16 41 H 0.41 2.46 8.10 -92.71 -0.75 1.71 16 42 H 0.11 -0.98 8.14 -2.38 -0.02 -1.00 16 43 H 0.10 -0.53 8.07 -2.39 -0.02 -0.55 16 Total: 0.00 -27.18 357.84 -4.35 -31.53 By element: Atomic # 1 Polarization: -14.91 SS G_CDS: -1.09 Total: -16.00 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 4.79 Total: 7.66 kcal Atomic # 7 Polarization: -7.14 SS G_CDS: -8.14 Total: -15.28 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -1.95 Total: -10.03 kcal Atomic # 14 Polarization: 0.08 SS G_CDS: 2.04 Total: 2.12 kcal Total: -27.18 -4.35 -31.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_15413834.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.490 kcal (2) G-P(sol) polarization free energy of solvation -27.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds