Wall clock time and date at job start Sun Mar 7 2021 04:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30271 * 126.28459 * 2 1 4 4 N 1.28660 * 109.38242 * 179.97438 * 3 2 1 5 5 C 1.30274 * 109.38352 * 0.02562 * 4 3 2 6 6 C 1.50700 * 126.28216 * 179.97438 * 5 4 3 7 7 H 1.09000 * 112.90817 * 168.77719 * 6 5 4 8 8 C 1.53781 * 113.61693 * 300.02723 * 6 5 4 9 9 C 1.53777 * 87.08023 * 139.98249 * 8 6 5 10 10 H 1.09007 * 113.61336 * 89.20415 * 9 8 6 11 11 N 1.46502 * 113.61293 * 220.01854 * 9 8 6 12 12 C 1.34781 * 119.99983 * 205.00162 * 11 9 8 13 13 O 1.21275 * 119.99966 * 355.19891 * 12 11 9 14 14 C 1.50696 * 120.00013 * 175.19697 * 12 11 9 15 15 C 1.53033 * 109.33574 * 241.68570 * 14 12 11 16 16 C 1.53558 * 108.55201 * 190.16053 * 15 14 12 17 17 N 1.47024 * 107.64747 * 60.97476 * 16 15 14 18 18 C 1.38922 * 118.88359 * 316.32359 * 17 16 15 19 19 C 1.31116 * 121.85079 * 13.29178 * 18 17 16 20 20 C 1.50698 * 118.55218 * 179.61496 * 19 18 17 21 21 O 1.42898 * 109.46667 * 103.74109 * 20 19 18 22 22 Si 1.86302 * 109.46835 * 343.74673 * 20 19 18 23 23 C 1.53774 * 113.61509 * 37.52693 * 6 5 4 24 24 O 1.34363 * 107.43463 * 0.24319 * 5 4 3 25 25 H 1.08994 * 109.47460 * 90.02390 * 1 2 3 26 26 H 1.09009 * 109.47135 * 210.02389 * 1 2 3 27 27 H 1.08999 * 109.46984 * 330.02128 * 1 2 3 28 28 H 1.09004 * 113.61436 * 254.52957 * 8 6 5 29 29 H 1.08999 * 113.61428 * 25.43047 * 8 6 5 30 30 H 0.96999 * 120.00363 * 24.99817 * 11 9 8 31 31 H 1.09000 * 109.32716 * 1.17235 * 14 12 11 32 32 H 1.09004 * 109.61932 * 309.89355 * 15 14 12 33 33 H 1.09001 * 109.62220 * 70.44146 * 15 14 12 34 34 H 1.09001 * 109.83855 * 301.42750 * 16 15 14 35 35 H 1.09004 * 109.86787 * 180.53263 * 16 15 14 36 36 H 0.97001 * 120.56335 * 136.34438 * 17 16 15 37 37 H 1.08006 * 119.07760 * 193.31846 * 18 17 16 38 38 H 1.09001 * 109.47519 * 223.74258 * 20 19 18 39 39 H 0.96702 * 114.00177 * 62.76098 * 21 20 19 40 40 H 1.48495 * 109.99792 * 299.99397 * 22 20 19 41 41 H 1.48502 * 110.00126 * 61.31563 * 22 20 19 42 42 H 1.09002 * 113.61544 * 334.56159 * 23 6 5 43 43 H 1.09002 * 113.61701 * 105.46968 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5089 0.6760 0.0005 5 6 3.5653 -0.6255 0.0004 6 6 4.8176 -1.4638 0.0003 7 1 4.6223 -2.5183 0.1955 8 6 5.7219 -1.2205 -1.2195 9 6 6.9157 -1.3180 -0.2552 10 1 7.2950 -2.3324 -0.1310 11 7 7.9750 -0.3446 -0.5325 12 6 9.2421 -0.6006 -0.1509 13 8 9.4910 -1.5945 0.4979 14 6 10.3495 0.3483 -0.5305 15 6 11.3663 -0.3848 -1.4084 16 6 12.6040 0.5091 -1.5730 17 7 13.1686 0.7394 -0.2352 18 6 12.3080 1.0337 0.8148 19 6 11.0117 0.8634 0.7156 20 6 10.1481 1.1985 1.9042 21 8 9.4872 2.4449 1.6763 22 14 11.2123 1.3293 3.4277 23 6 5.9511 -0.8781 0.8587 24 8 2.3021 -1.0832 -0.0058 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3634 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5135 28 1 5.6881 -2.0240 -1.9553 29 1 5.5990 -0.2328 -1.6640 30 1 7.7645 0.4840 -0.9907 31 1 9.9315 1.1856 -1.0893 32 1 11.6524 -1.3225 -0.9319 33 1 10.9278 -0.5866 -2.3857 34 1 12.3165 1.4600 -2.0216 35 1 13.3398 0.0104 -2.2039 36 1 14.1260 0.6870 -0.0882 37 1 12.7181 1.4140 1.7388 38 1 9.4050 0.4138 2.0462 39 1 8.8824 2.4372 0.9219 40 1 11.9051 0.0395 3.6755 41 1 12.2090 2.4172 3.2592 42 1 5.8910 0.2032 0.9824 43 1 6.1025 -1.4052 1.8007 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_15608500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:07:05 Heat of formation + Delta-G solvation = 14.314090 kcal Electronic energy + Delta-G solvation = -27416.558245 eV Core-core repulsion = 23466.262835 eV Total energy + Delta-G solvation = -3950.295410 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.31195 -41.69530 -40.31598 -38.90304 -37.48000 -37.25803 -34.92711 -33.77745 -33.22168 -32.87435 -29.68444 -27.65111 -26.88391 -26.65710 -25.82582 -23.81088 -23.40359 -23.32857 -21.77196 -20.93603 -19.36352 -18.98975 -18.56267 -18.49952 -18.11009 -17.98455 -17.32001 -16.58026 -16.36809 -15.86462 -15.69567 -15.56660 -15.26631 -14.88441 -14.75542 -14.59918 -14.24612 -14.14920 -13.73435 -13.70823 -13.62769 -13.59325 -13.42855 -13.33984 -12.96938 -12.72126 -12.68157 -12.38563 -12.30300 -12.27979 -11.91830 -11.86712 -11.57122 -11.07515 -10.93005 -10.73615 -10.47597 -10.11342 -8.58438 -4.85927 0.06877 1.12808 1.21449 1.25687 1.36162 1.54217 1.62868 1.85619 2.18992 2.52279 2.78714 3.21098 3.36605 3.48151 3.53344 3.60502 3.68294 3.73427 3.81579 3.96160 4.01807 4.04958 4.24911 4.28822 4.31473 4.41540 4.43338 4.49831 4.53303 4.55355 4.63556 4.64072 4.67406 4.69780 4.71166 4.82157 4.88974 5.02187 5.04789 5.12422 5.12997 5.33080 5.49555 6.20241 6.49662 6.72179 6.77238 7.19706 7.21425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.167 3.833 3 N -0.331 5.331 4 N -0.310 5.310 5 C 0.176 3.824 6 C -0.020 4.020 7 H 0.147 0.853 8 C -0.116 4.116 9 C 0.129 3.871 10 H 0.115 0.885 11 N -0.707 5.707 12 C 0.528 3.472 13 O -0.574 6.574 14 C -0.040 4.040 15 C -0.125 4.125 16 C 0.122 3.878 17 N -0.751 5.751 18 C 0.138 3.862 19 C -0.278 4.278 20 C -0.067 4.067 21 O -0.548 6.548 22 Si 0.788 3.212 23 C -0.133 4.133 24 O -0.232 6.232 25 H 0.118 0.882 26 H 0.113 0.887 27 H 0.116 0.884 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.416 0.584 31 H 0.111 0.889 32 H 0.055 0.945 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.410 0.590 37 H 0.121 0.879 38 H 0.058 0.942 39 H 0.370 0.630 40 H -0.283 1.283 41 H -0.278 1.278 42 H 0.094 0.906 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.953 -1.711 -4.179 5.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.044 4.044 3 N -0.177 5.177 4 N -0.155 5.155 5 C -0.036 4.036 6 C -0.040 4.040 7 H 0.165 0.835 8 C -0.155 4.155 9 C 0.024 3.976 10 H 0.133 0.867 11 N -0.358 5.358 12 C 0.315 3.685 13 O -0.452 6.452 14 C -0.061 4.061 15 C -0.164 4.164 16 C -0.002 4.002 17 N -0.381 5.381 18 C 0.016 3.984 19 C -0.289 4.289 20 C -0.177 4.177 21 O -0.354 6.354 22 Si 0.691 3.309 23 C -0.173 4.173 24 O -0.112 6.112 25 H 0.136 0.864 26 H 0.131 0.869 27 H 0.134 0.866 28 H 0.124 0.876 29 H 0.116 0.884 30 H 0.253 0.747 31 H 0.128 0.872 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.245 0.755 37 H 0.138 0.862 38 H 0.076 0.924 39 H 0.218 0.782 40 H -0.210 1.210 41 H -0.205 1.205 42 H 0.112 0.888 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.340 -1.044 -3.048 3.490 hybrid contribution -0.352 -1.194 -1.475 1.930 sum -1.691 -2.238 -4.523 5.323 Atomic orbital electron populations 1.20698 0.77003 1.07208 1.06872 1.28971 0.99342 0.78856 0.97193 1.74371 0.96548 1.27022 1.19787 1.74226 1.12648 1.10159 1.18503 1.28242 0.85361 0.91424 0.98567 1.21239 0.82745 0.99008 1.01044 0.83515 1.23421 0.91429 1.04907 0.95731 1.22302 0.85459 0.94470 0.95365 0.86674 1.45979 1.06735 1.23001 1.60115 1.20783 0.83981 0.85894 0.77808 1.90693 1.83896 1.30668 1.39991 1.19763 0.93951 0.97208 0.95197 1.21821 0.95935 0.98387 1.00227 1.21733 0.95557 0.99303 0.83590 1.44656 1.08418 1.77798 1.07257 1.20443 0.91062 0.95076 0.91852 1.20585 0.94285 1.15528 0.98514 1.25064 0.99895 0.88214 1.04519 1.86716 1.61920 1.32630 1.54127 0.92523 0.77628 0.76901 0.83809 1.23566 0.92223 1.02696 0.98766 1.84813 1.17803 1.38710 1.69910 0.86427 0.86882 0.86575 0.87588 0.88442 0.74687 0.87162 0.92610 0.88143 0.90934 0.87816 0.75469 0.86209 0.92446 0.78184 1.20998 1.20549 0.88772 0.89677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.42 10.51 71.24 0.75 1.17 16 2 C 0.17 0.55 8.48 88.34 0.75 1.30 16 3 N -0.33 -3.17 12.22 -165.50 -2.02 -5.19 16 4 N -0.31 -2.71 11.83 -165.50 -1.96 -4.66 16 5 C 0.18 0.63 7.53 88.34 0.67 1.30 16 6 C -0.02 0.07 4.29 -11.02 -0.05 0.02 16 7 H 0.15 -1.11 8.14 -2.39 -0.02 -1.13 16 8 C -0.12 0.70 7.38 31.12 0.23 0.93 16 9 C 0.13 -0.44 4.21 45.52 0.19 -0.24 16 10 H 0.12 -0.13 7.53 -2.38 -0.02 -0.15 16 11 N -0.71 2.24 5.35 -440.04 -2.36 -0.11 16 12 C 0.53 1.61 5.08 87.66 0.45 2.05 16 13 O -0.57 -6.88 16.05 -3.02 -0.05 -6.93 16 14 C -0.04 -0.02 2.72 -12.43 -0.03 -0.05 16 15 C -0.12 0.12 5.45 30.79 0.17 0.29 16 16 C 0.12 -0.42 7.16 86.47 0.62 0.20 16 17 N -0.75 -0.32 5.83 -345.87 -2.02 -2.33 16 18 C 0.14 0.70 9.60 83.41 0.80 1.50 16 19 C -0.28 -1.36 4.88 -16.76 -0.08 -1.44 16 20 C -0.07 -0.35 2.47 71.24 0.18 -0.17 16 21 O -0.55 -2.23 12.64 -148.98 -1.88 -4.11 16 22 Si 0.79 3.73 30.36 68.60 2.08 5.81 16 23 C -0.13 0.29 7.42 31.12 0.23 0.52 16 24 O -0.23 -0.91 10.87 -3.71 -0.04 -0.95 16 25 H 0.12 -1.19 8.14 -2.39 -0.02 -1.21 16 26 H 0.11 -1.20 8.14 -2.38 -0.02 -1.22 16 27 H 0.12 -0.97 8.14 -2.39 -0.02 -0.99 16 28 H 0.11 -0.93 8.14 -2.38 -0.02 -0.95 16 29 H 0.10 -0.49 8.07 -2.39 -0.02 -0.51 16 30 H 0.42 -3.35 8.57 -92.71 -0.79 -4.14 16 31 H 0.11 -0.53 7.91 -2.39 -0.02 -0.55 16 32 H 0.06 0.27 7.89 -2.39 -0.02 0.26 16 33 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 34 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 35 H 0.10 -0.75 8.14 -2.38 -0.02 -0.77 16 36 H 0.41 -1.24 8.96 -92.71 -0.83 -2.07 16 37 H 0.12 0.70 4.45 -2.91 -0.01 0.69 16 38 H 0.06 0.39 6.48 -2.39 -0.02 0.37 16 39 H 0.37 -0.81 9.10 -74.06 -0.67 -1.49 16 40 H -0.28 -2.75 7.11 99.48 0.71 -2.04 16 41 H -0.28 -2.29 6.74 99.48 0.67 -1.62 16 42 H 0.09 0.04 7.78 -2.39 -0.02 0.02 16 43 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 Total: 0.00 -25.09 356.21 -4.60 -29.69 By element: Atomic # 1 Polarization: -17.37 SS G_CDS: -1.22 Total: -18.59 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 4.86 Total: 7.38 kcal Atomic # 7 Polarization: -3.95 SS G_CDS: -8.35 Total: -12.30 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -1.97 Total: -12.00 kcal Atomic # 14 Polarization: 3.73 SS G_CDS: 2.08 Total: 5.81 kcal Total: -25.09 -4.60 -29.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_15608500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.004 kcal (2) G-P(sol) polarization free energy of solvation -25.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds