Wall clock time and date at job start Sun Mar 7 2021 04:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30278 * 126.28140 * 2 1 4 4 N 1.28666 * 109.37862 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.38253 * 0.02562 * 4 3 2 6 6 C 1.50703 * 126.28280 * 180.02562 * 5 4 3 7 7 H 1.08996 * 112.84847 * 191.17616 * 6 5 4 8 8 C 1.53781 * 113.61002 * 322.47438 * 6 5 4 9 9 C 1.53780 * 87.08030 * 139.98308 * 8 6 5 10 10 H 1.09004 * 113.61729 * 89.11574 * 9 8 6 11 11 N 1.46496 * 113.61709 * 220.01909 * 9 8 6 12 12 C 1.34780 * 120.00265 * 252.49631 * 11 9 8 13 13 O 1.21280 * 119.99810 * 0.02562 * 12 11 9 14 14 C 1.50703 * 120.00305 * 179.97438 * 12 11 9 15 15 O 1.42893 * 109.47296 * 180.02562 * 14 12 11 16 16 C 1.35900 * 117.00216 * 180.02562 * 15 14 12 17 17 C 1.38731 * 120.05286 * 359.72150 * 16 15 14 18 18 C 1.38150 * 119.94279 * 179.74473 * 17 16 15 19 19 C 1.38268 * 120.05293 * 0.50734 * 18 17 16 20 20 C 1.50701 * 119.94108 * 179.74146 * 19 18 17 21 21 O 1.42901 * 109.46593 * 120.02555 * 20 19 18 22 22 Si 1.86293 * 109.47220 * 0.02999 * 20 19 18 23 23 C 1.38261 * 120.11175 * 359.77267 * 19 18 17 24 24 C 1.38149 * 120.05942 * 359.97390 * 23 19 18 25 25 C 1.53781 * 87.08254 * 334.56662 * 9 8 6 26 26 O 1.34355 * 126.28342 * 179.68745 * 2 1 3 27 27 H 1.09002 * 109.47152 * 90.02383 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.02484 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.02464 * 1 2 3 30 30 H 1.08999 * 113.61561 * 254.53041 * 8 6 5 31 31 H 1.09007 * 113.61909 * 25.43623 * 8 6 5 32 32 H 0.97008 * 120.00174 * 72.49432 * 11 9 8 33 33 H 1.09002 * 109.46922 * 300.00091 * 14 12 11 34 34 H 1.09000 * 109.46699 * 59.99795 * 14 12 11 35 35 H 1.08000 * 120.02693 * 0.02562 * 17 16 15 36 36 H 1.08000 * 119.97157 * 180.27945 * 18 17 16 37 37 H 1.08996 * 109.47094 * 240.02358 * 20 19 18 38 38 H 0.96691 * 114.00652 * 300.00093 * 21 20 19 39 39 H 1.48508 * 110.00156 * 179.97438 * 22 20 19 40 40 H 1.48500 * 110.00099 * 301.31564 * 22 20 19 41 41 H 1.08002 * 119.97295 * 179.97438 * 23 19 18 42 42 H 1.07994 * 120.02941 * 179.97438 * 24 23 19 43 43 H 1.09001 * 113.61837 * 270.88515 * 25 9 8 44 44 H 1.08999 * 113.61437 * 139.97821 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 0.0005 5 6 3.5654 -0.6254 0.0004 6 6 4.8177 -1.4638 0.0014 7 1 4.6213 -2.5181 -0.1937 8 6 5.9520 -0.8777 -0.8558 9 6 6.9156 -1.3180 0.2589 10 1 7.2940 -2.3325 0.1336 11 7 7.9745 -0.3448 0.5376 12 6 9.2420 -0.6005 0.1572 13 8 9.5057 -1.6361 -0.4163 14 6 10.3312 0.4009 0.4433 15 8 11.5761 -0.0944 -0.0536 16 6 12.6690 0.6933 0.1250 17 6 12.5447 1.9204 0.7603 18 6 13.6582 2.7169 0.9454 19 6 14.8938 2.2968 0.4888 20 6 16.1057 3.1704 0.6869 21 8 17.0756 2.4693 1.4678 22 14 15.6075 4.7323 1.5716 23 6 15.0192 1.0769 -0.1498 24 6 13.9098 0.2743 -0.3327 25 6 5.7207 -1.2208 1.2222 26 8 2.3021 -1.0830 0.0059 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3633 0.8902 0.5135 29 1 -0.3633 -0.8898 0.5142 30 1 6.1043 -1.4044 -1.7978 31 1 5.8920 0.2037 -0.9792 32 1 7.7635 0.4838 0.9959 33 1 10.0946 1.3452 -0.0471 34 1 10.4060 0.5589 1.5192 35 1 11.5791 2.2506 1.1138 36 1 13.5627 3.6703 1.4439 37 1 16.5340 3.4230 -0.2831 38 1 16.7625 2.2123 2.3458 39 1 16.7940 5.6022 1.7736 40 1 14.5757 5.4546 0.7849 41 1 15.9854 0.7511 -0.5059 42 1 14.0083 -0.6783 -0.8319 43 1 5.5974 -0.2333 1.6669 44 1 5.6863 -2.0246 1.9576 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_2989410.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:07:17 Heat of formation + Delta-G solvation = -8.570216 kcal Electronic energy + Delta-G solvation = -28300.973985 eV Core-core repulsion = 23995.515295 eV Total energy + Delta-G solvation = -4305.458691 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.32542 -41.63690 -40.99172 -39.69880 -38.81619 -37.27068 -37.10337 -35.01783 -33.62660 -32.38709 -31.72014 -30.18103 -29.20060 -26.90210 -26.74828 -26.13062 -24.23729 -23.72587 -23.35043 -22.35158 -21.69870 -20.88321 -19.51444 -18.65989 -18.49832 -18.31574 -18.07027 -17.45280 -17.36440 -16.85750 -16.46340 -16.40542 -16.00369 -15.66420 -15.58236 -15.49208 -15.32257 -14.69285 -14.58724 -14.31772 -14.27309 -13.81313 -13.73404 -13.64369 -13.60536 -13.54243 -13.47530 -13.34753 -12.98502 -12.71848 -12.36238 -12.24442 -12.06409 -12.04754 -11.94509 -11.88428 -11.72161 -11.00329 -10.48979 -10.40237 -10.19216 -10.03915 -9.21887 -4.98496 0.05672 0.27972 0.31233 1.16476 1.23959 1.34843 1.41897 1.52459 1.65029 1.99182 2.57919 2.66409 2.78752 3.19007 3.35021 3.45671 3.54946 3.58261 3.64331 3.72010 3.74720 3.83610 3.96336 4.01612 4.05378 4.11012 4.30033 4.31303 4.40088 4.44038 4.49492 4.51227 4.52591 4.62470 4.66143 4.67791 4.69125 4.81015 4.87798 4.97680 5.01468 5.06906 5.16206 5.25989 5.42698 5.50353 5.70169 6.26147 6.44862 6.80451 7.09541 7.19802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.168 3.832 3 N -0.331 5.331 4 N -0.311 5.311 5 C 0.175 3.825 6 C -0.021 4.021 7 H 0.148 0.852 8 C -0.135 4.135 9 C 0.130 3.870 10 H 0.118 0.882 11 N -0.700 5.700 12 C 0.517 3.483 13 O -0.569 6.569 14 C 0.034 3.966 15 O -0.319 6.319 16 C 0.121 3.879 17 C -0.200 4.200 18 C -0.077 4.077 19 C -0.161 4.161 20 C -0.073 4.073 21 O -0.559 6.559 22 Si 0.782 3.218 23 C -0.061 4.061 24 C -0.166 4.166 25 C -0.115 4.115 26 O -0.232 6.232 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.421 0.579 33 H 0.123 0.877 34 H 0.130 0.870 35 H 0.164 0.836 36 H 0.153 0.847 37 H 0.103 0.897 38 H 0.395 0.605 39 H -0.303 1.303 40 H -0.282 1.282 41 H 0.133 0.867 42 H 0.127 0.873 43 H 0.100 0.900 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.533 0.440 5.830 8.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.043 4.043 3 N -0.178 5.178 4 N -0.156 5.156 5 C -0.036 4.036 6 C -0.041 4.041 7 H 0.165 0.835 8 C -0.174 4.174 9 C 0.025 3.975 10 H 0.136 0.864 11 N -0.353 5.353 12 C 0.303 3.697 13 O -0.447 6.447 14 C -0.044 4.044 15 O -0.232 6.232 16 C 0.076 3.924 17 C -0.218 4.218 18 C -0.094 4.094 19 C -0.162 4.162 20 C -0.183 4.183 21 O -0.367 6.367 22 Si 0.688 3.312 23 C -0.079 4.079 24 C -0.184 4.184 25 C -0.154 4.154 26 O -0.112 6.112 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.132 0.868 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.260 0.740 33 H 0.140 0.860 34 H 0.147 0.853 35 H 0.182 0.818 36 H 0.170 0.830 37 H 0.120 0.880 38 H 0.245 0.755 39 H -0.232 1.232 40 H -0.209 1.209 41 H 0.151 0.849 42 H 0.145 0.855 43 H 0.119 0.881 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.687 1.719 4.777 7.623 hybrid contribution -0.357 -1.047 -0.737 1.329 sum -6.044 0.672 4.040 7.301 Atomic orbital electron populations 1.20705 0.77006 1.07287 1.06825 1.28972 0.99350 0.78857 0.97148 1.74373 0.96553 1.27016 1.19835 1.74215 1.12661 1.10159 1.18556 1.28245 0.85388 0.91418 0.98562 1.21239 0.82723 0.99047 1.01086 0.83453 1.23588 0.92260 1.02741 0.98796 1.22335 0.85172 0.94483 0.95507 0.86444 1.45636 1.06021 1.23506 1.60140 1.20525 0.84162 0.86979 0.78012 1.90764 1.83014 1.28583 1.42313 1.22767 0.81193 0.97080 1.03316 1.86123 1.15202 1.45157 1.76714 1.19206 0.86630 0.90628 0.95967 1.21506 1.01581 0.94052 1.04700 1.21068 0.91303 0.99530 0.97497 1.20358 0.95740 0.97069 1.03030 1.25174 0.89490 1.03728 0.99874 1.86459 1.39825 1.78119 1.32254 0.93748 0.77357 0.73202 0.86893 1.20898 0.97918 0.93149 0.95929 1.20619 0.90589 1.02170 1.05048 1.23434 0.91085 1.05177 0.95697 1.84812 1.17799 1.38697 1.69865 0.86582 0.86483 0.86785 0.89664 0.88689 0.74042 0.85957 0.85277 0.81813 0.83027 0.88002 0.75516 1.23186 1.20902 0.84943 0.85514 0.88129 0.87404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.47 10.51 71.24 0.75 1.22 16 2 C 0.17 0.41 8.48 88.34 0.75 1.16 16 3 N -0.33 -2.85 12.22 -165.50 -2.02 -4.87 16 4 N -0.31 -2.35 11.83 -165.50 -1.96 -4.31 16 5 C 0.18 0.44 7.53 88.34 0.67 1.11 16 6 C -0.02 0.10 4.29 -11.01 -0.05 0.05 16 7 H 0.15 -1.27 8.14 -2.39 -0.02 -1.28 16 8 C -0.13 0.47 7.42 31.12 0.23 0.70 16 9 C 0.13 -0.63 4.24 45.52 0.19 -0.44 16 10 H 0.12 -0.27 7.47 -2.38 -0.02 -0.28 16 11 N -0.70 3.95 5.35 -440.04 -2.36 1.59 16 12 C 0.52 0.55 7.91 87.66 0.69 1.24 16 13 O -0.57 -6.93 16.10 16.01 0.26 -6.67 16 14 C 0.03 -0.14 5.22 71.24 0.37 0.23 16 15 O -0.32 -1.65 9.67 -73.39 -0.71 -2.36 16 16 C 0.12 0.37 6.69 22.51 0.15 0.52 16 17 C -0.20 0.55 9.04 22.37 0.20 0.75 16 18 C -0.08 0.21 8.66 22.26 0.19 0.41 16 19 C -0.16 -0.05 5.39 -19.85 -0.11 -0.15 16 20 C -0.07 0.03 2.82 71.24 0.20 0.23 16 21 O -0.56 -0.38 12.77 -148.98 -1.90 -2.28 16 22 Si 0.78 -2.37 29.78 68.60 2.04 -0.32 16 23 C -0.06 -0.18 9.60 22.25 0.21 0.04 16 24 C -0.17 -0.78 9.99 22.37 0.22 -0.55 16 25 C -0.12 0.87 7.38 31.12 0.23 1.10 16 26 O -0.23 -0.70 10.87 -3.56 -0.04 -0.74 16 27 H 0.12 -1.21 8.14 -2.39 -0.02 -1.23 16 28 H 0.12 -1.08 8.14 -2.39 -0.02 -1.10 16 29 H 0.11 -1.30 8.14 -2.38 -0.02 -1.32 16 30 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H 0.09 -0.12 7.78 -2.38 -0.02 -0.14 16 32 H 0.42 -5.01 8.73 -92.70 -0.81 -5.82 16 33 H 0.12 -1.18 7.65 -2.39 -0.02 -1.20 16 34 H 0.13 -1.41 7.67 -2.39 -0.02 -1.43 16 35 H 0.16 -1.63 6.30 -2.91 -0.02 -1.65 16 36 H 0.15 -1.19 4.87 -2.91 -0.01 -1.20 16 37 H 0.10 0.14 7.96 -2.39 -0.02 0.12 16 38 H 0.39 -2.97 8.70 -74.06 -0.64 -3.61 16 39 H -0.30 -1.55 7.11 99.48 0.71 -0.84 16 40 H -0.28 -0.26 7.11 99.48 0.71 0.44 16 41 H 0.13 0.29 8.06 -2.91 -0.02 0.26 16 42 H 0.13 0.65 8.06 -2.91 -0.02 0.63 16 43 H 0.10 -0.71 8.07 -2.39 -0.02 -0.73 16 44 H 0.11 -1.10 8.14 -2.39 -0.02 -1.12 16 Total: 0.00 -31.98 378.15 -2.12 -34.10 By element: Atomic # 1 Polarization: -21.43 SS G_CDS: -0.35 Total: -21.77 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 4.91 Total: 7.62 kcal Atomic # 7 Polarization: -1.24 SS G_CDS: -6.34 Total: -7.58 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -2.39 Total: -12.04 kcal Atomic # 14 Polarization: -2.37 SS G_CDS: 2.04 Total: -0.32 kcal Total: -31.98 -2.12 -34.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_2989410.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.530 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds