Wall clock time and date at job start Sun Mar 7 2021 04:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30271 * 126.28332 * 2 1 4 4 N 1.28675 * 109.38147 * 179.73107 * 3 2 1 5 5 C 1.30275 * 109.37665 * 0.44150 * 4 3 2 6 6 C 1.50696 * 126.27802 * 179.82996 * 5 4 3 7 7 H 1.09001 * 112.85137 * 168.49482 * 6 5 4 8 8 C 1.53784 * 113.61620 * 299.68422 * 6 5 4 9 9 C 1.53780 * 87.08198 * 140.06580 * 8 6 5 10 10 H 1.08994 * 113.61237 * 89.20200 * 9 8 6 11 11 N 1.46500 * 113.61619 * 220.02314 * 9 8 6 12 12 C 1.34783 * 119.99694 * 205.00116 * 11 9 8 13 13 O 1.21278 * 120.00198 * 0.02562 * 12 11 9 14 14 C 1.50704 * 119.99397 * 179.97438 * 12 11 9 15 15 C 1.53002 * 109.46600 * 180.02562 * 14 12 11 16 16 O 1.42903 * 109.47006 * 180.02562 * 15 14 12 17 17 C 1.35899 * 116.99930 * 180.02562 * 16 15 14 18 18 C 1.38708 * 120.05461 * 180.02562 * 17 16 15 19 19 C 1.38163 * 119.94499 * 179.97438 * 18 17 16 20 20 C 1.50703 * 119.97220 * 180.02562 * 19 18 17 21 21 O 1.42903 * 109.47187 * 300.00397 * 20 19 18 22 22 Si 1.86306 * 109.46909 * 180.02562 * 20 19 18 23 23 C 1.38243 * 120.05438 * 0.02562 * 19 18 17 24 24 C 1.38289 * 120.11362 * 359.97438 * 23 19 18 25 25 C 1.38125 * 120.05159 * 0.02562 * 24 23 19 26 26 C 1.53785 * 87.08413 * 334.57143 * 9 8 6 27 27 O 1.34360 * 107.43966 * 359.56484 * 5 4 3 28 28 H 1.09008 * 109.47148 * 270.00316 * 1 2 3 29 29 H 1.08998 * 109.47276 * 30.00302 * 1 2 3 30 30 H 1.09001 * 109.47059 * 150.00357 * 1 2 3 31 31 H 1.09007 * 113.61017 * 25.52378 * 8 6 5 32 32 H 1.08991 * 113.61938 * 254.61623 * 8 6 5 33 33 H 0.96991 * 120.00191 * 24.99600 * 11 9 8 34 34 H 1.08993 * 109.46956 * 60.00299 * 14 12 11 35 35 H 1.09003 * 109.47247 * 299.99527 * 14 12 11 36 36 H 1.08998 * 109.47474 * 59.99819 * 15 14 12 37 37 H 1.08995 * 109.46823 * 299.99839 * 15 14 12 38 38 H 1.08001 * 120.02776 * 359.95189 * 18 17 16 39 39 H 1.08995 * 109.46836 * 60.00303 * 20 19 18 40 40 H 0.96701 * 113.99878 * 299.99703 * 21 20 19 41 41 H 1.48496 * 109.99537 * 179.97438 * 22 20 19 42 42 H 1.48496 * 110.00040 * 301.32032 * 22 20 19 43 43 H 1.08004 * 119.94070 * 180.02562 * 23 19 18 44 44 H 1.07993 * 119.96940 * 180.28495 * 24 23 19 45 45 H 1.08000 * 120.02364 * 180.02562 * 25 24 23 46 46 H 1.09001 * 113.61515 * 139.97669 * 26 9 8 47 47 H 1.08992 * 113.61082 * 270.88350 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5091 0.6760 0.0057 5 6 3.5654 -0.6255 0.0001 6 6 4.8176 -1.4639 0.0001 7 1 4.6212 -2.5181 0.1952 8 6 5.7215 -1.2213 -1.2202 9 6 6.9158 -1.3204 -0.2566 10 1 7.2939 -2.3351 -0.1327 11 7 7.9760 -0.3482 -0.5341 12 6 9.2430 -0.6057 -0.1532 13 8 9.5055 -1.6425 0.4188 14 6 10.3337 0.3941 -0.4393 15 6 11.6659 -0.1386 0.0921 16 8 12.7001 0.8097 -0.1786 17 6 13.9552 0.4876 0.2312 18 6 15.0069 1.3624 0.0015 19 6 16.2819 1.0329 0.4195 20 6 17.4249 1.9831 0.1708 21 8 17.5670 2.1997 -1.2346 22 14 18.9988 1.2520 0.8483 23 6 16.5100 -0.1677 1.0658 24 6 15.4632 -1.0415 1.2960 25 6 14.1867 -0.7167 0.8800 26 6 5.9523 -0.8797 0.8581 27 8 2.3021 -1.0832 0.0001 28 1 -0.3634 0.0001 1.0277 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 5.5996 -0.2333 -1.6642 32 1 5.6864 -2.0245 -1.9561 33 1 7.7662 0.4807 -0.9919 34 1 10.0983 1.3387 0.0509 35 1 10.4091 0.5518 -1.5152 36 1 11.9012 -1.0832 -0.3983 37 1 11.5909 -0.2966 1.1679 38 1 14.8293 2.3001 -0.5040 39 1 17.2222 2.9326 0.6661 40 1 17.7493 1.3957 -1.7400 41 1 20.1337 2.1792 0.6087 42 1 18.8531 0.9920 2.3031 43 1 17.5073 -0.4232 1.3922 44 1 15.6432 -1.9767 1.8052 45 1 13.3695 -1.3993 1.0604 46 1 6.1036 -1.4072 1.7999 47 1 5.8936 0.2016 0.9821 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_4549614.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:07:26 Heat of formation + Delta-G solvation = -17.297297 kcal Electronic energy + Delta-G solvation = -29936.009111 eV Core-core repulsion = 25474.634367 eV Total energy + Delta-G solvation = -4461.374744 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.156 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.33873 -41.49802 -41.12169 -39.69713 -39.03569 -37.28644 -37.26225 -34.96885 -33.72439 -33.11467 -32.45550 -30.86566 -29.64159 -27.25653 -26.90838 -26.80161 -25.35319 -23.76902 -23.66926 -23.31046 -22.06515 -21.50778 -20.78822 -19.34443 -18.63875 -18.52089 -18.12873 -17.72807 -17.48858 -17.34357 -17.12788 -16.85631 -16.42705 -16.19743 -15.95008 -15.69106 -15.51159 -15.27343 -14.88996 -14.54808 -14.39105 -14.32115 -14.20486 -14.06210 -13.69918 -13.63449 -13.61236 -13.43409 -13.24038 -12.99945 -12.92083 -12.84749 -12.68736 -12.37353 -12.34459 -11.99382 -11.94107 -11.89565 -11.81336 -11.62611 -11.05595 -10.50624 -10.50263 -10.14945 -9.92798 -9.27628 -4.97894 0.04277 0.19553 0.38684 1.16720 1.22771 1.30486 1.48694 1.65544 1.72523 1.97517 2.47620 2.66582 2.77503 3.19193 3.34735 3.47279 3.50669 3.57174 3.64321 3.66199 3.71028 3.84649 3.89708 3.95478 4.01673 4.09716 4.23090 4.27962 4.28947 4.37158 4.42916 4.48974 4.50538 4.51519 4.61493 4.61676 4.66047 4.67443 4.67999 4.76113 4.80636 4.86702 4.97591 5.00537 5.09937 5.25702 5.37604 5.43562 5.45549 5.70225 6.32684 6.43345 6.76066 7.11509 7.18392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.168 3.832 3 N -0.333 5.333 4 N -0.313 5.313 5 C 0.175 3.825 6 C -0.020 4.020 7 H 0.149 0.851 8 C -0.118 4.118 9 C 0.130 3.870 10 H 0.121 0.879 11 N -0.706 5.706 12 C 0.525 3.475 13 O -0.578 6.578 14 C -0.136 4.136 15 C 0.074 3.926 16 O -0.326 6.326 17 C 0.117 3.883 18 C -0.143 4.143 19 C -0.084 4.084 20 C -0.079 4.079 21 O -0.555 6.555 22 Si 0.787 3.213 23 C -0.158 4.158 24 C -0.075 4.075 25 C -0.211 4.211 26 C -0.134 4.134 27 O -0.232 6.232 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.418 0.582 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.396 0.604 41 H -0.298 1.298 42 H -0.284 1.284 43 H 0.148 0.852 44 H 0.154 0.846 45 H 0.138 0.862 46 H 0.087 0.913 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.462 -5.337 -2.368 6.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.043 4.043 3 N -0.179 5.179 4 N -0.158 5.158 5 C -0.036 4.036 6 C -0.041 4.041 7 H 0.167 0.833 8 C -0.157 4.157 9 C 0.025 3.975 10 H 0.139 0.861 11 N -0.358 5.358 12 C 0.312 3.688 13 O -0.458 6.458 14 C -0.175 4.175 15 C -0.001 4.001 16 O -0.240 6.240 17 C 0.072 3.928 18 C -0.162 4.162 19 C -0.085 4.085 20 C -0.188 4.188 21 O -0.363 6.363 22 Si 0.692 3.308 23 C -0.175 4.175 24 C -0.092 4.092 25 C -0.229 4.229 26 C -0.173 4.173 27 O -0.112 6.112 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.114 0.886 32 H 0.125 0.875 33 H 0.256 0.744 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.144 0.856 39 H 0.123 0.877 40 H 0.246 0.754 41 H -0.227 1.227 42 H -0.211 1.211 43 H 0.165 0.835 44 H 0.171 0.829 45 H 0.156 0.844 46 H 0.106 0.894 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.467 -3.932 -1.343 4.832 hybrid contribution -1.325 -0.257 0.150 1.358 sum -3.792 -4.189 -1.192 5.775 Atomic orbital electron populations 1.20711 0.76948 1.07308 1.06861 1.28983 0.99358 0.78836 0.97087 1.74372 0.96558 1.27085 1.19882 1.74228 1.12689 1.10262 1.18616 1.28274 0.85438 0.91410 0.98493 1.21259 0.82681 0.99083 1.01048 0.83300 1.23433 0.91524 1.04918 0.95809 1.22335 0.85306 0.94690 0.95216 0.86075 1.45825 1.06735 1.23235 1.59970 1.20561 0.84069 0.86815 0.77305 1.90732 1.83226 1.28584 1.43226 1.21458 0.90380 0.99567 1.06133 1.22452 0.85323 0.91303 1.01039 1.85957 1.14918 1.46444 1.76689 1.19143 0.84420 0.94133 0.95120 1.20312 0.90724 1.00420 1.04700 1.20239 0.94410 0.95824 0.97988 1.25313 1.04607 1.01689 0.87199 1.86468 1.94394 1.38450 1.17027 0.93529 0.72937 0.85216 0.79109 1.21179 1.00243 0.94079 1.02025 1.21258 0.91235 0.99968 0.96776 1.21557 0.99745 0.97252 1.04387 1.23575 0.92305 1.02583 0.98875 1.84814 1.17775 1.38675 1.69903 0.86524 0.86499 0.86731 0.88588 0.87460 0.74443 0.85963 0.85519 0.91272 0.91734 0.85631 0.87660 0.75433 1.22665 1.21083 0.83452 0.82853 0.84416 0.89433 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.44 10.51 71.24 0.75 1.19 16 2 C 0.17 0.52 8.48 88.34 0.75 1.27 16 3 N -0.33 -3.17 12.22 -165.50 -2.02 -5.19 16 4 N -0.31 -2.71 11.83 -165.51 -1.96 -4.67 16 5 C 0.18 0.58 7.54 88.34 0.67 1.24 16 6 C -0.02 0.09 4.29 -11.01 -0.05 0.04 16 7 H 0.15 -1.27 8.14 -2.39 -0.02 -1.29 16 8 C -0.12 0.79 7.38 31.12 0.23 1.02 16 9 C 0.13 -0.61 4.24 45.52 0.19 -0.42 16 10 H 0.12 -0.38 7.46 -2.39 -0.02 -0.40 16 11 N -0.71 3.41 5.36 -440.03 -2.36 1.06 16 12 C 0.52 -0.15 7.83 87.66 0.69 0.53 16 13 O -0.58 -4.44 15.58 -3.02 -0.05 -4.49 16 14 C -0.14 0.52 6.07 29.85 0.18 0.70 16 15 C 0.07 0.09 4.03 71.98 0.29 0.38 16 16 O -0.33 -1.62 10.14 -92.41 -0.94 -2.56 16 17 C 0.12 0.66 6.69 22.50 0.15 0.81 16 18 C -0.14 -0.79 9.55 22.36 0.21 -0.58 16 19 C -0.08 -0.21 5.39 -19.88 -0.11 -0.31 16 20 C -0.08 -0.09 2.82 71.24 0.20 0.11 16 21 O -0.56 -1.01 12.77 -148.98 -1.90 -2.92 16 22 Si 0.79 -1.34 29.79 68.60 2.04 0.71 16 23 C -0.16 0.01 8.67 22.28 0.19 0.20 16 24 C -0.07 -0.01 10.04 22.25 0.22 0.21 16 25 C -0.21 -0.64 9.04 22.36 0.20 -0.43 16 26 C -0.13 0.43 7.42 31.12 0.23 0.66 16 27 O -0.23 -0.83 10.87 -3.69 -0.04 -0.87 16 28 H 0.12 -1.17 8.14 -2.38 -0.02 -1.19 16 29 H 0.12 -1.02 8.14 -2.39 -0.02 -1.04 16 30 H 0.11 -1.27 8.14 -2.39 -0.02 -1.29 16 31 H 0.10 -0.51 8.07 -2.38 -0.02 -0.53 16 32 H 0.11 -1.01 8.14 -2.39 -0.02 -1.03 16 33 H 0.42 -3.88 8.73 -92.72 -0.81 -4.69 16 34 H 0.12 -0.78 8.14 -2.39 -0.02 -0.80 16 35 H 0.13 -0.93 8.14 -2.39 -0.02 -0.95 16 36 H 0.07 0.12 7.62 -2.39 -0.02 0.11 16 37 H 0.06 0.16 7.62 -2.39 -0.02 0.15 16 38 H 0.13 0.79 8.06 -2.91 -0.02 0.77 16 39 H 0.11 0.27 7.96 -2.39 -0.02 0.25 16 40 H 0.40 -2.53 8.70 -74.06 -0.64 -3.18 16 41 H -0.30 -1.68 7.11 99.48 0.71 -0.97 16 42 H -0.28 -0.76 7.11 99.48 0.71 -0.05 16 43 H 0.15 -0.69 4.87 -2.91 -0.01 -0.71 16 44 H 0.15 -0.76 8.06 -2.91 -0.02 -0.78 16 45 H 0.14 0.17 6.30 -2.91 -0.02 0.15 16 46 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 47 H 0.09 -0.03 7.78 -2.39 -0.02 -0.04 16 Total: 0.00 -27.51 399.11 -2.60 -30.11 By element: Atomic # 1 Polarization: -17.42 SS G_CDS: -0.39 Total: -17.81 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 5.00 Total: 6.63 kcal Atomic # 7 Polarization: -2.47 SS G_CDS: -6.34 Total: -8.81 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -2.93 Total: -10.84 kcal Atomic # 14 Polarization: -1.34 SS G_CDS: 2.04 Total: 0.71 kcal Total: -27.51 -2.60 -30.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_4549614.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.812 kcal (2) G-P(sol) polarization free energy of solvation -27.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds