Wall clock time and date at job start Sun Mar 7 2021 04:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30279 * 126.28197 * 2 1 4 4 N 1.28666 * 109.38067 * 180.02562 * 3 2 1 5 5 C 1.30280 * 109.38352 * 359.97438 * 4 3 2 6 6 C 1.50695 * 126.28479 * 179.97438 * 5 4 3 7 7 H 1.08999 * 112.85361 * 191.22453 * 6 5 4 8 8 C 1.53791 * 113.68844 * 322.49105 * 6 5 4 9 9 C 1.53782 * 87.08115 * 139.99174 * 8 6 5 10 10 H 1.09000 * 113.68819 * 89.12498 * 9 8 6 11 11 N 1.46492 * 113.61066 * 220.01574 * 9 8 6 12 12 C 1.34779 * 120.00011 * 252.49184 * 11 9 8 13 13 O 1.21277 * 120.00381 * 0.02562 * 12 11 9 14 14 C 1.50699 * 119.99801 * 180.02562 * 12 11 9 15 15 C 1.53000 * 109.47175 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47423 * 180.02562 * 15 14 12 17 17 O 1.42900 * 109.47009 * 180.02562 * 16 15 14 18 18 C 1.35904 * 117.00131 * 180.02562 * 17 16 15 19 19 C 1.38705 * 120.05898 * 180.29486 * 18 17 16 20 20 C 1.38173 * 119.94106 * 180.29847 * 19 18 17 21 21 C 1.50701 * 119.96798 * 179.70184 * 20 19 18 22 22 O 1.42902 * 109.47202 * 299.97865 * 21 20 19 23 23 Si 1.86305 * 109.47023 * 179.97438 * 21 20 19 24 24 C 1.38232 * 120.05858 * 359.68223 * 20 19 18 25 25 C 1.38294 * 120.11124 * 0.02562 * 24 20 19 26 26 C 1.38122 * 120.05499 * 359.97438 * 25 24 20 27 27 C 1.53779 * 87.08034 * 334.56537 * 9 8 6 28 28 O 1.34358 * 107.43317 * 0.24532 * 5 4 3 29 29 H 1.08996 * 109.46787 * 89.98095 * 1 2 3 30 30 H 1.09002 * 109.46853 * 209.98140 * 1 2 3 31 31 H 1.08993 * 109.46943 * 329.97604 * 1 2 3 32 32 H 1.08996 * 113.61273 * 25.43893 * 8 6 5 33 33 H 1.09007 * 113.61082 * 254.53988 * 8 6 5 34 34 H 0.97005 * 120.00175 * 72.50337 * 11 9 8 35 35 H 1.09000 * 109.47283 * 60.01000 * 14 12 11 36 36 H 1.08999 * 109.47793 * 300.00552 * 14 12 11 37 37 H 1.09003 * 109.46965 * 60.00202 * 15 14 12 38 38 H 1.09002 * 109.47444 * 300.00713 * 15 14 12 39 39 H 1.09000 * 109.47327 * 60.00496 * 16 15 14 40 40 H 1.08994 * 109.47082 * 300.00011 * 16 15 14 41 41 H 1.07997 * 120.03207 * 0.02562 * 19 18 17 42 42 H 1.08997 * 109.47279 * 59.98172 * 21 20 19 43 43 H 0.96704 * 114.00011 * 180.02562 * 22 21 20 44 44 H 1.48495 * 109.99753 * 298.68147 * 23 21 20 45 45 H 1.48505 * 109.99870 * 59.99781 * 23 21 20 46 46 H 1.08002 * 119.94710 * 180.02562 * 24 20 19 47 47 H 1.08000 * 119.97251 * 179.97438 * 25 24 20 48 48 H 1.08002 * 120.02504 * 180.02562 * 26 25 24 49 49 H 1.09000 * 113.61211 * 139.97816 * 27 9 8 50 50 H 1.08997 * 113.61634 * 270.88355 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 -0.0005 5 6 3.5654 -0.6254 -0.0004 6 6 4.8176 -1.4638 -0.0014 7 1 4.6211 -2.5180 -0.1965 8 6 5.9518 -0.8794 -0.8601 9 6 6.9161 -1.3202 0.2538 10 1 7.2941 -2.3350 0.1296 11 7 7.9764 -0.3481 0.5306 12 6 9.2432 -0.6055 0.1490 13 8 9.5051 -1.6418 -0.4241 14 6 10.3340 0.3943 0.4343 15 6 11.6657 -0.1377 -0.0991 16 6 12.7733 0.8770 0.1912 17 8 14.0170 0.3803 -0.3075 18 6 15.1113 1.1662 -0.1294 19 6 16.3497 0.7487 -0.5941 20 6 17.4618 1.5469 -0.4062 21 6 18.8087 1.0907 -0.9050 22 8 19.1581 -0.1425 -0.2730 23 14 20.0903 2.3810 -0.5002 24 6 17.3398 2.7635 0.2385 25 6 16.1052 3.1849 0.6974 26 6 14.9904 2.3907 0.5121 27 6 5.7224 -1.2212 1.2182 28 8 2.3022 -1.0831 -0.0052 29 1 -0.3633 0.0003 -1.0276 30 1 -0.3633 -0.8902 0.5136 31 1 -0.3633 0.8897 0.5142 32 1 5.8928 0.2019 -0.9840 33 1 6.1024 -1.4068 -1.8021 34 1 7.7669 0.4809 0.9888 35 1 10.4102 0.5519 1.5101 36 1 10.0983 1.3391 -0.0555 37 1 11.5894 -0.2950 -1.1750 38 1 11.9017 -1.0827 0.3904 39 1 12.8496 1.0339 1.2671 40 1 12.5376 1.8221 -0.2980 41 1 16.4454 -0.2015 -1.0985 42 1 18.7667 0.9466 -1.9846 43 1 20.0155 -0.4958 -0.5470 44 1 19.7554 3.6593 -1.1775 45 1 20.1574 2.5868 0.9689 46 1 18.2102 3.3862 0.3840 47 1 16.0126 4.1357 1.2012 48 1 14.0264 2.7204 0.8703 49 1 5.6879 -2.0246 1.9541 50 1 5.6008 -0.2334 1.6625 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14942244_4549616.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:07:32 Heat of formation + Delta-G solvation = -15.925383 kcal Electronic energy + Delta-G solvation = -31486.153571 eV Core-core repulsion = 26869.300699 eV Total energy + Delta-G solvation = -4616.852873 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.172 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.24024 -41.38548 -41.16595 -39.68203 -39.03036 -37.30908 -37.15936 -34.93822 -34.90683 -33.61541 -32.55477 -31.27097 -29.85397 -28.51628 -27.04819 -26.91903 -26.48467 -24.13064 -23.67159 -23.56129 -22.93523 -21.74749 -21.52981 -20.86734 -18.88365 -18.58567 -18.43232 -18.39471 -18.15923 -17.51143 -17.42281 -17.29774 -16.95851 -16.57207 -16.31342 -15.85879 -15.60503 -15.59415 -15.30893 -14.86441 -14.60390 -14.52284 -14.44656 -14.23246 -13.98657 -13.88876 -13.81435 -13.77705 -13.49977 -13.38253 -13.33404 -13.19980 -12.86006 -12.73218 -12.56750 -12.47885 -12.38394 -12.22401 -12.04411 -12.00679 -11.86255 -11.70100 -11.64662 -10.90103 -10.44158 -10.38713 -10.15836 -9.83594 -9.20259 -4.95549 0.09557 0.23885 0.43537 1.16819 1.28028 1.34499 1.56348 1.65664 1.87704 1.99481 2.31525 2.67596 2.72066 3.08028 3.22010 3.38510 3.39709 3.52991 3.55029 3.57717 3.76229 3.79216 3.84192 3.90442 3.94534 3.99810 4.10208 4.18371 4.18818 4.22926 4.24801 4.26466 4.30806 4.34835 4.36222 4.43546 4.47731 4.49125 4.54404 4.58649 4.63669 4.65678 4.74594 4.76339 4.95913 5.00344 5.00760 5.15119 5.28749 5.37875 5.38976 5.47403 5.70520 6.37659 6.43855 6.63481 7.14385 7.29627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.163 3.837 3 N -0.289 5.289 4 N -0.282 5.282 5 C 0.174 3.826 6 C -0.022 4.022 7 H 0.128 0.872 8 C -0.135 4.135 9 C 0.128 3.872 10 H 0.125 0.875 11 N -0.721 5.721 12 C 0.517 3.483 13 O -0.533 6.533 14 C -0.139 4.139 15 C -0.105 4.105 16 C 0.059 3.941 17 O -0.310 6.310 18 C 0.135 3.865 19 C -0.122 4.122 20 C -0.036 4.036 21 C -0.074 4.074 22 O -0.544 6.544 23 Si 0.688 3.312 24 C -0.164 4.164 25 C -0.072 4.072 26 C -0.206 4.206 27 C -0.130 4.130 28 O -0.225 6.225 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.405 0.595 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.136 0.864 42 H 0.077 0.923 43 H 0.383 0.617 44 H -0.255 1.255 45 H -0.250 1.250 46 H 0.119 0.881 47 H 0.130 0.870 48 H 0.132 0.868 49 H 0.090 0.910 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.412 0.365 0.929 1.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.047 4.047 3 N -0.136 5.136 4 N -0.129 5.129 5 C -0.037 4.037 6 C -0.042 4.042 7 H 0.146 0.854 8 C -0.175 4.175 9 C 0.023 3.977 10 H 0.143 0.857 11 N -0.372 5.372 12 C 0.304 3.696 13 O -0.409 6.409 14 C -0.179 4.179 15 C -0.143 4.143 16 C -0.017 4.017 17 O -0.224 6.224 18 C 0.089 3.911 19 C -0.141 4.141 20 C -0.036 4.036 21 C -0.184 4.184 22 O -0.351 6.351 23 Si 0.589 3.411 24 C -0.182 4.182 25 C -0.090 4.090 26 C -0.224 4.224 27 C -0.169 4.169 28 O -0.104 6.104 29 H 0.119 0.881 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.105 0.895 34 H 0.240 0.760 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.154 0.846 42 H 0.095 0.905 43 H 0.231 0.769 44 H -0.180 1.180 45 H -0.175 1.175 46 H 0.137 0.863 47 H 0.148 0.852 48 H 0.149 0.851 49 H 0.109 0.891 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.300 1.540 1.071 2.282 hybrid contribution -1.419 -0.633 0.259 1.575 sum -2.719 0.906 1.330 3.159 Atomic orbital electron populations 1.20409 0.79964 1.05956 1.05507 1.28110 0.97959 0.79493 0.99157 1.74442 0.95951 1.25526 1.17682 1.74310 1.12401 1.08992 1.17166 1.27695 0.84692 0.91614 0.99718 1.21008 0.84083 0.98546 1.00603 0.85426 1.23629 0.91936 1.03274 0.98616 1.22344 0.85385 0.95052 0.94944 0.85737 1.45934 1.07533 1.22721 1.61019 1.20612 0.83339 0.87632 0.78015 1.90750 1.82466 1.26867 1.40807 1.21542 0.93392 0.99102 1.03865 1.21230 0.90360 0.98861 1.03834 1.22837 0.82072 0.97825 0.98919 1.86082 1.15088 1.44872 1.76333 1.18993 0.87172 0.89870 0.95050 1.20246 0.89012 1.01253 1.03576 1.19127 0.93367 0.93844 0.97268 1.24732 0.99260 0.95257 0.99184 1.86502 1.42051 1.37774 1.68730 0.95370 0.86407 0.77629 0.81704 1.20769 0.97826 0.97117 1.02460 1.20853 0.91570 0.99184 0.97382 1.21296 1.00219 0.95432 1.05475 1.23498 0.92916 1.04461 0.96044 1.84793 1.17572 1.38465 1.69616 0.88085 0.88704 0.87318 0.87842 0.89478 0.76006 0.88262 0.88236 0.89751 0.89748 0.91739 0.91738 0.84588 0.90512 0.76935 1.17982 1.17500 0.86344 0.85242 0.85067 0.89124 0.88237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.19 10.51 36.01 0.38 0.57 16 2 C 0.16 0.26 8.48 -12.94 -0.11 0.15 16 3 N -0.29 -1.25 12.22 32.55 0.40 -0.85 16 4 N -0.28 -1.10 11.84 32.55 0.39 -0.72 16 5 C 0.17 0.29 7.54 -12.94 -0.10 0.19 16 6 C -0.02 0.04 4.29 -90.96 -0.39 -0.35 16 7 H 0.13 -0.43 8.14 -51.93 -0.42 -0.85 16 8 C -0.14 0.19 7.42 -25.91 -0.19 0.00 16 9 C 0.13 -0.23 4.24 -67.12 -0.28 -0.52 16 10 H 0.12 -0.10 7.46 -51.93 -0.39 -0.49 16 11 N -0.72 1.46 5.35 -53.02 -0.28 1.18 16 12 C 0.52 0.10 7.83 -10.98 -0.09 0.01 16 13 O -0.53 -2.41 15.58 5.56 0.09 -2.32 16 14 C -0.14 0.36 5.70 -27.88 -0.16 0.20 16 15 C -0.10 0.01 4.87 -26.73 -0.13 -0.12 16 16 C 0.06 -0.02 4.74 37.16 0.18 0.16 16 17 O -0.31 -1.01 10.14 -19.44 -0.20 -1.21 16 18 C 0.13 0.47 6.69 -39.22 -0.26 0.21 16 19 C -0.12 -0.48 9.55 -39.43 -0.38 -0.86 16 20 C -0.04 -0.12 5.42 -104.65 -0.57 -0.69 16 21 C -0.07 -0.06 2.81 36.01 0.10 0.04 16 22 O -0.54 -0.56 12.74 -35.23 -0.45 -1.01 16 23 Si 0.69 -0.39 29.79 -169.99 -5.06 -5.46 16 24 C -0.16 -0.51 8.67 -39.56 -0.34 -0.85 16 25 C -0.07 -0.14 10.04 -39.60 -0.40 -0.54 16 26 C -0.21 -0.40 9.04 -39.43 -0.36 -0.76 16 27 C -0.13 0.35 7.38 -25.92 -0.19 0.16 16 28 O -0.23 -0.44 10.87 5.38 0.06 -0.39 16 29 H 0.10 -0.44 8.14 -51.93 -0.42 -0.86 16 30 H 0.09 -0.44 8.14 -51.93 -0.42 -0.86 16 31 H 0.11 -0.43 8.14 -51.93 -0.42 -0.85 16 32 H 0.10 -0.04 7.79 -51.93 -0.40 -0.44 16 33 H 0.09 -0.12 8.14 -51.93 -0.42 -0.54 16 34 H 0.40 -1.75 8.73 -40.82 -0.36 -2.10 16 35 H 0.10 -0.45 8.14 -51.93 -0.42 -0.87 16 36 H 0.10 -0.43 8.14 -51.93 -0.42 -0.86 16 37 H 0.08 0.11 8.10 -51.93 -0.42 -0.31 16 38 H 0.08 0.11 8.10 -51.93 -0.42 -0.31 16 39 H 0.06 -0.10 7.66 -51.93 -0.40 -0.50 16 40 H 0.06 -0.11 7.66 -51.93 -0.40 -0.50 16 41 H 0.14 0.49 8.06 -52.49 -0.42 0.06 16 42 H 0.08 -0.07 7.96 -51.93 -0.41 -0.48 16 43 H 0.38 -1.61 8.74 45.56 0.40 -1.21 16 44 H -0.25 -0.44 7.11 56.52 0.40 -0.04 16 45 H -0.25 -0.66 7.11 56.52 0.40 -0.25 16 46 H 0.12 0.28 4.87 -52.49 -0.26 0.02 16 47 H 0.13 -0.05 8.06 -52.49 -0.42 -0.47 16 48 H 0.13 -0.07 6.30 -52.49 -0.33 -0.40 16 49 H 0.09 -0.33 8.14 -51.93 -0.42 -0.75 16 50 H 0.10 -0.23 8.07 -51.93 -0.42 -0.65 16 LS Contribution 420.66 15.07 6.34 6.34 Total: 0.00 -12.70 420.66 -9.24 -21.94 By element: Atomic # 1 Polarization: -7.28 SS G_CDS: -7.23 Total: -14.51 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -3.29 Total: -3.00 kcal Atomic # 7 Polarization: -0.89 SS G_CDS: 0.50 Total: -0.39 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -0.50 Total: -4.93 kcal Atomic # 14 Polarization: -0.39 SS G_CDS: -5.06 Total: -5.46 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -12.70 -9.24 -21.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_4549616.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.019 kcal (2) G-P(sol) polarization free energy of solvation -12.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds