Wall clock time and date at job start Sun Mar 7 2021 04:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30279 * 126.28197 * 2 1 4 4 N 1.28666 * 109.38067 * 180.02562 * 3 2 1 5 5 C 1.30280 * 109.38352 * 359.97438 * 4 3 2 6 6 C 1.50695 * 126.28479 * 179.97438 * 5 4 3 7 7 H 1.08999 * 112.85361 * 191.22453 * 6 5 4 8 8 C 1.53791 * 113.68844 * 322.49105 * 6 5 4 9 9 C 1.53782 * 87.08115 * 139.99174 * 8 6 5 10 10 H 1.09000 * 113.68819 * 89.12498 * 9 8 6 11 11 N 1.46492 * 113.61066 * 220.01574 * 9 8 6 12 12 C 1.34779 * 120.00011 * 252.49184 * 11 9 8 13 13 O 1.21277 * 120.00381 * 0.02562 * 12 11 9 14 14 C 1.50699 * 119.99801 * 180.02562 * 12 11 9 15 15 C 1.53000 * 109.47175 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47423 * 180.02562 * 15 14 12 17 17 O 1.42900 * 109.47009 * 180.02562 * 16 15 14 18 18 C 1.35904 * 117.00131 * 180.02562 * 17 16 15 19 19 C 1.38705 * 120.05898 * 180.29486 * 18 17 16 20 20 C 1.38173 * 119.94106 * 180.29847 * 19 18 17 21 21 C 1.50701 * 119.96798 * 179.70184 * 20 19 18 22 22 O 1.42902 * 109.47202 * 299.97865 * 21 20 19 23 23 Si 1.86305 * 109.47023 * 179.97438 * 21 20 19 24 24 C 1.38232 * 120.05858 * 359.68223 * 20 19 18 25 25 C 1.38294 * 120.11124 * 0.02562 * 24 20 19 26 26 C 1.38122 * 120.05499 * 359.97438 * 25 24 20 27 27 C 1.53779 * 87.08034 * 334.56537 * 9 8 6 28 28 O 1.34358 * 107.43317 * 0.24532 * 5 4 3 29 29 H 1.08996 * 109.46787 * 89.98095 * 1 2 3 30 30 H 1.09002 * 109.46853 * 209.98140 * 1 2 3 31 31 H 1.08993 * 109.46943 * 329.97604 * 1 2 3 32 32 H 1.08996 * 113.61273 * 25.43893 * 8 6 5 33 33 H 1.09007 * 113.61082 * 254.53988 * 8 6 5 34 34 H 0.97005 * 120.00175 * 72.50337 * 11 9 8 35 35 H 1.09000 * 109.47283 * 60.01000 * 14 12 11 36 36 H 1.08999 * 109.47793 * 300.00552 * 14 12 11 37 37 H 1.09003 * 109.46965 * 60.00202 * 15 14 12 38 38 H 1.09002 * 109.47444 * 300.00713 * 15 14 12 39 39 H 1.09000 * 109.47327 * 60.00496 * 16 15 14 40 40 H 1.08994 * 109.47082 * 300.00011 * 16 15 14 41 41 H 1.07997 * 120.03207 * 0.02562 * 19 18 17 42 42 H 1.08997 * 109.47279 * 59.98172 * 21 20 19 43 43 H 0.96704 * 114.00011 * 180.02562 * 22 21 20 44 44 H 1.48495 * 109.99753 * 298.68147 * 23 21 20 45 45 H 1.48505 * 109.99870 * 59.99781 * 23 21 20 46 46 H 1.08002 * 119.94710 * 180.02562 * 24 20 19 47 47 H 1.08000 * 119.97251 * 179.97438 * 25 24 20 48 48 H 1.08002 * 120.02504 * 180.02562 * 26 25 24 49 49 H 1.09000 * 113.61211 * 139.97816 * 27 9 8 50 50 H 1.08997 * 113.61634 * 270.88355 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 -0.0005 5 6 3.5654 -0.6254 -0.0004 6 6 4.8176 -1.4638 -0.0014 7 1 4.6211 -2.5180 -0.1965 8 6 5.9518 -0.8794 -0.8601 9 6 6.9161 -1.3202 0.2538 10 1 7.2941 -2.3350 0.1296 11 7 7.9764 -0.3481 0.5306 12 6 9.2432 -0.6055 0.1490 13 8 9.5051 -1.6418 -0.4241 14 6 10.3340 0.3943 0.4343 15 6 11.6657 -0.1377 -0.0991 16 6 12.7733 0.8770 0.1912 17 8 14.0170 0.3803 -0.3075 18 6 15.1113 1.1662 -0.1294 19 6 16.3497 0.7487 -0.5941 20 6 17.4618 1.5469 -0.4062 21 6 18.8087 1.0907 -0.9050 22 8 19.1581 -0.1425 -0.2730 23 14 20.0903 2.3810 -0.5002 24 6 17.3398 2.7635 0.2385 25 6 16.1052 3.1849 0.6974 26 6 14.9904 2.3907 0.5121 27 6 5.7224 -1.2212 1.2182 28 8 2.3022 -1.0831 -0.0052 29 1 -0.3633 0.0003 -1.0276 30 1 -0.3633 -0.8902 0.5136 31 1 -0.3633 0.8897 0.5142 32 1 5.8928 0.2019 -0.9840 33 1 6.1024 -1.4068 -1.8021 34 1 7.7669 0.4809 0.9888 35 1 10.4102 0.5519 1.5101 36 1 10.0983 1.3391 -0.0555 37 1 11.5894 -0.2950 -1.1750 38 1 11.9017 -1.0827 0.3904 39 1 12.8496 1.0339 1.2671 40 1 12.5376 1.8221 -0.2980 41 1 16.4454 -0.2015 -1.0985 42 1 18.7667 0.9466 -1.9846 43 1 20.0155 -0.4958 -0.5470 44 1 19.7554 3.6593 -1.1775 45 1 20.1574 2.5868 0.9689 46 1 18.2102 3.3862 0.3840 47 1 16.0126 4.1357 1.2012 48 1 14.0264 2.7204 0.8703 49 1 5.6879 -2.0246 1.9541 50 1 5.6008 -0.2334 1.6625 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_4549616.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:07:30 Heat of formation + Delta-G solvation = -22.990224 kcal Electronic energy + Delta-G solvation = -31486.459926 eV Core-core repulsion = 26869.300699 eV Total energy + Delta-G solvation = -4617.159227 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.172 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.34593 -41.42217 -41.21844 -39.66413 -39.13024 -37.36044 -37.29311 -34.96405 -34.86853 -33.56942 -32.67416 -31.39465 -29.79114 -28.49205 -26.97870 -26.91364 -26.50630 -24.16710 -23.81069 -23.61915 -22.96162 -21.82701 -21.48381 -20.77762 -18.97794 -18.61980 -18.52986 -18.42474 -18.14558 -17.54973 -17.48594 -17.34550 -17.05267 -16.49612 -16.29308 -15.92633 -15.62203 -15.56370 -15.34444 -14.85987 -14.63404 -14.62281 -14.33437 -14.26040 -14.05874 -13.77558 -13.67023 -13.62002 -13.54614 -13.42764 -13.30510 -13.24155 -13.00730 -12.66211 -12.61581 -12.47839 -12.34584 -12.30305 -12.10023 -11.94519 -11.90052 -11.77508 -11.64883 -10.95403 -10.50967 -10.43065 -10.11248 -9.96379 -9.37850 -4.93488 0.03468 0.08502 0.24619 1.16654 1.21999 1.27917 1.57992 1.65157 1.89483 1.97693 2.33913 2.52569 2.76092 3.18434 3.34253 3.37640 3.46464 3.60971 3.64218 3.70063 3.71693 3.79887 3.83698 3.86506 3.99223 3.99487 4.11070 4.16416 4.27431 4.29801 4.32358 4.39022 4.41084 4.42951 4.48998 4.51094 4.59498 4.60572 4.62502 4.66982 4.68106 4.79304 4.85476 4.86360 4.99752 5.00122 5.08325 5.11277 5.18973 5.22039 5.30544 5.49122 5.58672 6.32800 6.50628 6.88169 7.17603 7.21494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.168 3.832 3 N -0.332 5.332 4 N -0.311 5.311 5 C 0.176 3.824 6 C -0.021 4.021 7 H 0.147 0.853 8 C -0.133 4.133 9 C 0.128 3.872 10 H 0.116 0.884 11 N -0.709 5.709 12 C 0.513 3.487 13 O -0.584 6.584 14 C -0.130 4.130 15 C -0.100 4.100 16 C 0.055 3.945 17 O -0.333 6.333 18 C 0.123 3.877 19 C -0.146 4.146 20 C -0.052 4.052 21 C -0.088 4.088 22 O -0.565 6.565 23 Si 0.786 3.214 24 C -0.184 4.184 25 C -0.074 4.074 26 C -0.206 4.206 27 C -0.117 4.117 28 O -0.232 6.232 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.418 0.582 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.128 0.872 42 H 0.092 0.908 43 H 0.404 0.596 44 H -0.285 1.285 45 H -0.295 1.295 46 H 0.121 0.879 47 H 0.155 0.845 48 H 0.159 0.841 49 H 0.105 0.895 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.158 1.028 1.765 2.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.043 4.043 3 N -0.178 5.178 4 N -0.157 5.157 5 C -0.036 4.036 6 C -0.041 4.041 7 H 0.165 0.835 8 C -0.173 4.173 9 C 0.022 3.978 10 H 0.133 0.867 11 N -0.361 5.361 12 C 0.301 3.699 13 O -0.464 6.464 14 C -0.170 4.170 15 C -0.139 4.139 16 C -0.019 4.019 17 O -0.247 6.247 18 C 0.078 3.922 19 C -0.165 4.165 20 C -0.052 4.052 21 C -0.197 4.197 22 O -0.375 6.375 23 Si 0.692 3.308 24 C -0.202 4.202 25 C -0.092 4.092 26 C -0.224 4.224 27 C -0.156 4.156 28 O -0.112 6.112 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.136 0.864 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.256 0.744 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.146 0.854 42 H 0.110 0.890 43 H 0.255 0.745 44 H -0.212 1.212 45 H -0.223 1.223 46 H 0.138 0.862 47 H 0.172 0.828 48 H 0.177 0.823 49 H 0.124 0.876 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.058 2.217 1.904 3.575 hybrid contribution -1.269 -0.858 0.006 1.532 sum -3.327 1.359 1.910 4.070 Atomic orbital electron populations 1.20711 0.76936 1.07316 1.06862 1.28989 0.99359 0.78825 0.97097 1.74370 0.96539 1.27044 1.19868 1.74221 1.12685 1.10181 1.18581 1.28249 0.85390 0.91419 0.98546 1.21250 0.82748 0.99022 1.01099 0.83504 1.23570 0.92328 1.02590 0.98780 1.22282 0.85539 0.94700 0.95236 0.86651 1.45874 1.06904 1.23092 1.60186 1.21120 0.84297 0.87359 0.77108 1.90733 1.83287 1.29104 1.43303 1.21549 0.90769 0.98899 1.05744 1.21147 0.91999 0.98373 1.02335 1.23047 0.80531 0.98220 1.00141 1.86060 1.16102 1.45735 1.76812 1.19186 0.87102 0.90587 0.95332 1.20369 0.89928 1.01470 1.04757 1.19508 0.94441 0.94032 0.97248 1.25002 0.98717 0.95896 1.00064 1.86449 1.43899 1.37963 1.69187 0.94325 0.84248 0.74744 0.77525 1.20990 0.98684 0.97347 1.03181 1.21220 0.91112 1.00082 0.96755 1.21584 1.01460 0.94600 1.04777 1.23421 0.91500 1.04900 0.95736 1.84814 1.17793 1.38726 1.69890 0.86531 0.86760 0.86447 0.88875 0.89708 0.74447 0.85444 0.85663 0.91931 0.91879 0.89912 0.89846 0.85395 0.88975 0.74479 1.21229 1.22286 0.86168 0.82753 0.82342 0.87648 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.44 10.51 71.24 0.75 1.18 16 2 C 0.17 0.55 8.48 88.34 0.75 1.30 16 3 N -0.33 -3.16 12.22 -165.49 -2.02 -5.18 16 4 N -0.31 -2.72 11.84 -165.51 -1.96 -4.68 16 5 C 0.18 0.65 7.54 88.34 0.67 1.32 16 6 C -0.02 0.07 4.29 -11.01 -0.05 0.02 16 7 H 0.15 -1.08 8.14 -2.39 -0.02 -1.10 16 8 C -0.13 0.30 7.42 31.12 0.23 0.53 16 9 C 0.13 -0.44 4.24 45.52 0.19 -0.25 16 10 H 0.12 -0.11 7.46 -2.39 -0.02 -0.13 16 11 N -0.71 3.05 5.35 -440.05 -2.36 0.69 16 12 C 0.51 0.33 7.83 87.66 0.69 1.01 16 13 O -0.58 -6.24 15.58 -3.02 -0.05 -6.29 16 14 C -0.13 0.79 5.70 29.85 0.17 0.96 16 15 C -0.10 -0.04 4.87 30.59 0.15 0.11 16 16 C 0.05 -0.06 4.74 71.98 0.34 0.28 16 17 O -0.33 -2.50 10.14 -92.47 -0.94 -3.44 16 18 C 0.12 0.97 6.69 22.51 0.15 1.12 16 19 C -0.15 -1.41 9.55 22.37 0.21 -1.20 16 20 C -0.05 -0.41 5.42 -19.88 -0.11 -0.52 16 21 C -0.09 -0.19 2.81 71.24 0.20 0.01 16 22 O -0.56 -1.48 12.74 -148.98 -1.90 -3.38 16 23 Si 0.79 -0.69 29.79 68.60 2.04 1.35 16 24 C -0.18 -1.25 8.67 22.28 0.19 -1.06 16 25 C -0.07 -0.26 10.04 22.26 0.22 -0.04 16 26 C -0.21 -0.67 9.04 22.37 0.20 -0.47 16 27 C -0.12 0.69 7.38 31.12 0.23 0.92 16 28 O -0.23 -0.93 10.87 -3.67 -0.04 -0.97 16 29 H 0.12 -1.16 8.14 -2.39 -0.02 -1.18 16 30 H 0.11 -1.25 8.14 -2.39 -0.02 -1.27 16 31 H 0.12 -1.02 8.14 -2.39 -0.02 -1.04 16 32 H 0.09 0.02 7.79 -2.39 -0.02 0.00 16 33 H 0.08 -0.15 8.14 -2.38 -0.02 -0.17 16 34 H 0.42 -4.01 8.73 -92.70 -0.81 -4.82 16 35 H 0.13 -1.45 8.14 -2.39 -0.02 -1.47 16 36 H 0.13 -1.36 8.14 -2.39 -0.02 -1.38 16 37 H 0.06 0.29 8.10 -2.39 -0.02 0.27 16 38 H 0.06 0.29 8.10 -2.39 -0.02 0.27 16 39 H 0.08 -0.39 7.66 -2.39 -0.02 -0.41 16 40 H 0.08 -0.40 7.66 -2.39 -0.02 -0.42 16 41 H 0.13 1.26 8.06 -2.91 -0.02 1.23 16 42 H 0.09 -0.14 7.96 -2.39 -0.02 -0.16 16 43 H 0.40 -3.43 8.74 -74.05 -0.65 -4.08 16 44 H -0.28 -1.11 7.11 99.48 0.71 -0.40 16 45 H -0.30 -1.88 7.11 99.48 0.71 -1.18 16 46 H 0.12 0.65 4.87 -2.91 -0.01 0.64 16 47 H 0.15 -0.35 8.06 -2.91 -0.02 -0.37 16 48 H 0.16 -0.50 6.30 -2.91 -0.02 -0.52 16 49 H 0.11 -0.89 8.14 -2.39 -0.02 -0.91 16 50 H 0.10 -0.49 8.07 -2.39 -0.02 -0.51 16 Total: 0.00 -33.31 420.66 -2.45 -35.76 By element: Atomic # 1 Polarization: -18.67 SS G_CDS: -0.43 Total: -19.10 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 5.19 Total: 5.23 kcal Atomic # 7 Polarization: -2.83 SS G_CDS: -6.34 Total: -9.17 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -2.92 Total: -14.07 kcal Atomic # 14 Polarization: -0.69 SS G_CDS: 2.04 Total: 1.35 kcal Total: -33.31 -2.45 -35.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_4549616.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.773 kcal (2) G-P(sol) polarization free energy of solvation -33.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds