Wall clock time and date at job start Sun Mar 7 2021 04:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36551 * 126.64287 * 2 1 4 4 C 1.46655 * 125.99020 * 359.97438 * 3 2 1 5 5 O 1.21703 * 119.99810 * 359.71489 * 4 3 2 6 6 N 1.34777 * 120.00110 * 179.44344 * 4 3 2 7 7 C 1.46504 * 119.99854 * 180.27595 * 6 4 3 8 8 H 1.09004 * 112.84690 * 334.66407 * 7 6 4 9 9 C 1.53775 * 113.61442 * 105.85931 * 7 6 4 10 10 C 1.53957 * 87.02116 * 139.94966 * 9 7 6 11 11 H 1.09003 * 113.61092 * 89.19151 * 10 9 7 12 12 C 1.50696 * 113.66994 * 220.06714 * 10 9 7 13 13 N 1.30270 * 126.28143 * 37.25234 * 12 10 9 14 14 N 1.28665 * 109.38261 * 179.82665 * 13 12 10 15 15 C 1.30274 * 109.37659 * 0.43741 * 14 13 12 16 16 C 1.50708 * 126.28081 * 179.72966 * 15 14 13 17 17 O 1.34357 * 107.43635 * 359.73334 * 15 14 13 18 18 C 1.53785 * 113.61042 * 203.46907 * 7 6 4 19 19 O 1.34912 * 108.01969 * 179.71424 * 3 2 1 20 20 C 1.33928 * 109.38949 * 0.26625 * 19 3 2 21 21 C 1.50699 * 125.61638 * 179.97438 * 20 19 3 22 22 O 1.42900 * 109.47352 * 270.02115 * 21 20 19 23 23 C 1.35899 * 117.00138 * 180.02562 * 22 21 20 24 24 C 1.38722 * 120.05497 * 359.72820 * 23 22 21 25 25 C 1.38152 * 119.94131 * 179.69643 * 24 23 22 26 26 C 1.38266 * 120.05455 * 0.60290 * 25 24 23 27 27 C 1.50697 * 119.94190 * 179.69963 * 26 25 24 28 28 O 1.42905 * 109.47044 * 244.97054 * 27 26 25 29 29 Si 1.86295 * 109.47455 * 4.97380 * 27 26 25 30 30 C 1.38267 * 120.10920 * 359.67104 * 26 25 24 31 31 C 1.38133 * 120.06020 * 0.02562 * 30 26 25 32 32 C 1.35135 * 108.76621 * 359.97438 * 20 19 3 33 33 H 1.08998 * 109.47011 * 90.00044 * 1 2 3 34 34 H 1.08998 * 109.46712 * 209.99977 * 1 2 3 35 35 H 1.09006 * 109.47014 * 329.99595 * 1 2 3 36 36 H 0.96990 * 119.99728 * 0.26873 * 6 4 3 37 37 H 1.09003 * 113.61624 * 254.52725 * 9 7 6 38 38 H 1.09000 * 113.61889 * 25.43043 * 9 7 6 39 39 H 1.08990 * 109.47115 * 270.00554 * 16 15 14 40 40 H 1.08999 * 109.46880 * 30.00767 * 16 15 14 41 41 H 1.08998 * 109.46581 * 150.00040 * 16 15 14 42 42 H 1.09000 * 113.61317 * 334.56023 * 18 7 6 43 43 H 1.08990 * 113.61266 * 105.38509 * 18 7 6 44 44 H 1.09000 * 109.47353 * 30.02315 * 21 20 19 45 45 H 1.09004 * 109.47184 * 150.02196 * 21 20 19 46 46 H 1.07997 * 120.03448 * 359.97438 * 24 23 22 47 47 H 1.07996 * 119.97164 * 180.27562 * 25 24 23 48 48 H 1.09004 * 109.47253 * 124.97202 * 27 26 25 49 49 H 0.96701 * 113.99725 * 60.00144 * 28 27 26 50 50 H 1.48499 * 109.99874 * 58.67980 * 29 27 26 51 51 H 1.48502 * 110.00092 * 180.02562 * 29 27 26 52 52 H 1.08000 * 119.96834 * 180.02562 * 30 26 25 53 53 H 1.07998 * 120.03395 * 180.02562 * 31 30 26 54 54 H 1.07991 * 126.44347 * 180.02562 * 32 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3220 1.0956 0.0000 4 6 1.8842 2.4953 -0.0005 5 8 0.6967 2.7615 -0.0063 6 7 2.7970 3.4869 0.0109 7 6 2.3596 4.8851 0.0164 8 1 1.3694 5.0205 -0.4187 9 6 2.5349 5.5800 1.3770 10 6 2.9935 6.8229 0.5927 11 1 2.1772 7.4900 0.3156 12 6 4.1509 7.5475 1.2302 13 7 5.1595 6.9985 1.8453 14 7 5.9585 7.9178 2.2599 15 6 5.4820 9.0850 1.9316 16 6 6.1089 10.4216 2.2345 17 8 4.3290 8.8785 1.2734 18 6 3.4127 5.8621 -0.5326 19 8 3.6005 0.6648 0.0064 20 6 3.6184 -0.6743 0.0046 21 6 4.8551 -1.5355 0.0096 22 8 5.2531 -1.8054 -1.3361 23 6 6.3594 -2.5754 -1.5096 24 6 7.0509 -3.0565 -0.4075 25 6 8.1716 -3.8442 -0.5866 26 6 8.6113 -4.1429 -1.8630 27 6 9.8379 -4.9968 -2.0555 28 8 10.8657 -4.2213 -2.6755 29 14 10.4347 -5.6086 -0.4001 30 6 7.9270 -3.6598 -2.9631 31 6 6.8023 -2.8769 -2.7894 32 6 2.3448 -1.1262 -0.0025 33 1 -0.3633 0.0000 -1.0277 34 1 -0.3633 -0.8900 0.5138 35 1 -0.3633 0.8900 0.5139 36 1 3.7434 3.2748 0.0155 37 1 1.5993 5.7242 1.9174 38 1 3.3179 5.1399 1.9945 39 1 5.7457 10.7836 3.1962 40 1 7.1930 10.3141 2.2727 41 1 5.8417 11.1335 1.4536 42 1 4.4362 5.4992 -0.4382 43 1 3.1854 6.2326 -1.5321 44 1 5.6591 -1.0136 0.5286 45 1 4.6420 -2.4744 0.5207 46 1 6.7110 -2.8192 0.5898 47 1 8.7077 -4.2227 0.2711 48 1 9.5921 -5.8481 -2.6904 49 1 11.1353 -3.4456 -2.1648 50 1 9.3636 -6.3900 0.2688 51 1 11.6445 -6.4516 -0.5762 52 1 8.2722 -3.8948 -3.9591 53 1 6.2679 -2.5002 -3.6490 54 1 2.0307 -2.1594 -0.0051 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_4549632.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:07:40 Heat of formation + Delta-G solvation = 7.879640 kcal Electronic energy + Delta-G solvation = -39056.060849 eV Core-core repulsion = 33736.879627 eV Total energy + Delta-G solvation = -5319.181223 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 426.172 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -45.33238 -43.94247 -41.33303 -41.17868 -39.53036 -39.20678 -37.27733 -37.17889 -35.57773 -34.79927 -33.65181 -33.13364 -32.05437 -31.51615 -29.81030 -28.88966 -28.35281 -26.93548 -26.66845 -26.17242 -24.36101 -23.83684 -23.51272 -22.75343 -22.37919 -22.21282 -21.27259 -20.58600 -19.47264 -19.18258 -18.63761 -18.50798 -18.32447 -17.55117 -17.48426 -17.38026 -16.92641 -16.65376 -16.49600 -16.22582 -15.98541 -15.88158 -15.67575 -15.51094 -15.39052 -14.97382 -14.65440 -14.57008 -14.34703 -14.27349 -14.21495 -14.10002 -13.81594 -13.75039 -13.71360 -13.66406 -13.60700 -13.50423 -13.44765 -13.42205 -12.98763 -12.84459 -12.69554 -12.38768 -12.26101 -12.06660 -12.03741 -11.96425 -11.89489 -11.75129 -11.30640 -10.80981 -10.50486 -10.40381 -10.33601 -10.04000 -9.72159 -9.23935 -4.99227 -0.27328 0.05107 0.27615 0.30990 0.96066 1.16256 1.23796 1.33842 1.36805 1.64595 1.93273 1.98306 1.98728 2.36843 2.65799 2.75950 3.16554 3.29462 3.32632 3.46863 3.56952 3.61573 3.63950 3.66612 3.70682 3.72011 3.81734 3.94892 3.99444 4.02830 4.08138 4.29132 4.29612 4.31296 4.37889 4.43413 4.45616 4.47223 4.49936 4.52756 4.59617 4.60539 4.63865 4.68323 4.68774 4.73169 4.78998 4.85352 4.96128 4.97036 4.98126 5.02079 5.09283 5.15843 5.25904 5.28942 5.39764 5.50426 5.67908 5.69446 6.28377 6.28630 6.79283 6.87423 7.19487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.095 4.095 3 C -0.095 4.095 4 C 0.606 3.394 5 O -0.540 6.540 6 N -0.700 5.700 7 C 0.128 3.872 8 H 0.130 0.870 9 C -0.133 4.133 10 C -0.017 4.017 11 H 0.154 0.846 12 C 0.175 3.825 13 N -0.313 5.313 14 N -0.332 5.332 15 C 0.168 3.832 16 C -0.060 4.060 17 O -0.230 6.230 18 C -0.119 4.119 19 O -0.161 6.161 20 C 0.010 3.990 21 C 0.135 3.865 22 O -0.326 6.326 23 C 0.125 3.875 24 C -0.202 4.202 25 C -0.076 4.076 26 C -0.161 4.161 27 C -0.071 4.071 28 O -0.558 6.558 29 Si 0.775 3.225 30 C -0.062 4.062 31 C -0.163 4.163 32 C -0.188 4.188 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.414 0.586 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.092 0.908 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.129 0.871 46 H 0.160 0.840 47 H 0.152 0.848 48 H 0.104 0.896 49 H 0.395 0.605 50 H -0.283 1.283 51 H -0.303 1.303 52 H 0.133 0.867 53 H 0.131 0.869 54 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.678 3.872 2.231 4.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.147 4.147 4 C 0.394 3.606 5 O -0.419 6.419 6 N -0.349 5.349 7 C 0.024 3.976 8 H 0.147 0.853 9 C -0.172 4.172 10 C -0.037 4.037 11 H 0.172 0.828 12 C -0.036 4.036 13 N -0.159 5.159 14 N -0.179 5.179 15 C -0.043 4.043 16 C -0.118 4.118 17 O -0.110 6.110 18 C -0.158 4.158 19 O -0.057 6.057 20 C -0.042 4.042 21 C 0.061 3.939 22 O -0.241 6.241 23 C 0.080 3.920 24 C -0.220 4.220 25 C -0.093 4.093 26 C -0.162 4.162 27 C -0.181 4.181 28 O -0.366 6.366 29 Si 0.682 3.318 30 C -0.080 4.080 31 C -0.181 4.181 32 C -0.207 4.207 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.251 0.749 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.111 0.889 43 H 0.129 0.871 44 H 0.122 0.878 45 H 0.147 0.853 46 H 0.178 0.822 47 H 0.169 0.831 48 H 0.121 0.879 49 H 0.245 0.755 50 H -0.210 1.210 51 H -0.232 1.232 52 H 0.151 0.849 53 H 0.149 0.851 54 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 0.878 2.345 2.644 3.641 hybrid contribution -0.601 0.453 -0.936 1.201 sum 0.277 2.797 1.708 3.289 Atomic orbital electron populations 1.20458 0.87298 1.04024 1.03301 1.20984 0.98498 0.91237 0.99049 1.21908 0.81664 0.95033 1.16111 1.16579 0.85636 0.82202 0.76215 1.90855 1.16571 1.82669 1.51853 1.45807 1.10093 1.05638 1.73395 1.22510 1.00249 0.78173 0.96670 0.85255 1.23601 1.03081 0.92930 0.97592 1.21259 0.91189 0.94236 0.97013 0.82816 1.28231 0.99336 0.77535 0.98542 1.74233 1.02152 1.26095 1.13379 1.74372 1.24511 0.97111 1.21859 1.28996 0.82473 1.00767 0.92031 1.20709 1.01581 0.83930 1.05559 1.84808 1.38566 1.27782 1.59863 1.23437 0.99904 0.93531 0.98952 1.83967 1.28178 1.22561 1.71041 1.22408 0.96968 0.80325 1.04503 1.21255 0.91716 0.98141 0.82759 1.86107 1.42270 1.66434 1.29304 1.19097 0.86507 0.91713 0.94699 1.21494 0.98500 1.03059 0.98947 1.21045 0.95732 0.96153 0.96363 1.20342 0.99288 1.02749 0.93811 1.25132 0.87123 0.96174 1.09663 1.86469 1.54827 1.43908 1.51435 0.93813 0.76885 0.84352 0.76792 1.20925 0.92877 0.94718 0.99467 1.20622 0.99055 1.02972 0.95462 1.21887 0.90924 1.01253 1.06603 0.90393 0.89381 0.90799 0.74883 0.88784 0.89273 0.86488 0.86517 0.86740 0.88924 0.87111 0.87796 0.85329 0.82215 0.83090 0.87901 0.75539 1.20995 1.23157 0.84907 0.85062 0.80046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.26 9.81 71.24 0.70 0.44 16 2 C -0.09 -0.44 6.20 -19.74 -0.12 -0.56 16 3 C -0.10 -0.55 7.13 24.07 0.17 -0.38 16 4 C 0.61 3.59 7.79 86.44 0.67 4.26 16 5 O -0.54 -5.67 14.36 -4.36 -0.06 -5.73 16 6 N -0.70 -0.30 5.36 -444.00 -2.38 -2.68 16 7 C 0.13 -0.34 4.21 45.52 0.19 -0.15 16 8 H 0.13 -0.32 7.50 -2.39 -0.02 -0.33 16 9 C -0.13 0.28 7.43 31.18 0.23 0.51 16 10 C -0.02 0.06 4.29 -10.95 -0.05 0.01 16 11 H 0.15 -1.32 8.14 -2.39 -0.02 -1.34 16 12 C 0.18 0.67 7.54 88.34 0.67 1.34 16 13 N -0.31 -2.94 11.83 -165.52 -1.96 -4.90 16 14 N -0.33 -3.28 12.22 -165.50 -2.02 -5.31 16 15 C 0.17 0.56 8.48 88.34 0.75 1.31 16 16 C -0.06 0.43 10.51 71.24 0.75 1.18 16 17 O -0.23 -0.88 10.87 -3.53 -0.04 -0.91 16 18 C -0.12 0.59 7.38 31.12 0.23 0.82 16 19 O -0.16 -0.65 10.40 -4.99 -0.05 -0.70 16 20 C 0.01 0.01 6.94 24.97 0.17 0.18 16 21 C 0.14 -0.56 5.27 71.24 0.38 -0.18 16 22 O -0.33 -0.55 10.12 -92.41 -0.94 -1.48 16 23 C 0.12 0.11 6.69 22.51 0.15 0.26 16 24 C -0.20 0.68 9.04 22.37 0.20 0.88 16 25 C -0.08 0.25 8.66 22.26 0.19 0.45 16 26 C -0.16 0.09 5.35 -19.85 -0.11 -0.02 16 27 C -0.07 0.06 2.80 71.23 0.20 0.26 16 28 O -0.56 -0.20 12.83 -148.98 -1.91 -2.11 16 29 Si 0.78 -2.27 29.80 68.60 2.04 -0.22 16 30 C -0.06 -0.08 9.68 22.25 0.22 0.13 16 31 C -0.16 -0.36 9.99 22.37 0.22 -0.13 16 32 C -0.19 -0.18 10.73 22.07 0.24 0.05 16 33 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.09 -0.11 8.14 -2.39 -0.02 -0.13 16 35 H 0.07 0.44 6.45 -2.38 -0.02 0.43 16 36 H 0.41 -0.75 8.47 -92.72 -0.79 -1.53 16 37 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 38 H 0.09 0.13 7.78 -2.39 -0.02 0.11 16 39 H 0.12 -1.17 8.14 -2.39 -0.02 -1.19 16 40 H 0.12 -1.00 8.14 -2.39 -0.02 -1.02 16 41 H 0.11 -1.25 8.14 -2.39 -0.02 -1.27 16 42 H 0.09 -0.27 8.06 -2.39 -0.02 -0.28 16 43 H 0.11 -0.91 8.14 -2.39 -0.02 -0.93 16 44 H 0.10 -0.78 7.65 -2.39 -0.02 -0.80 16 45 H 0.13 -1.25 7.67 -2.38 -0.02 -1.27 16 46 H 0.16 -1.50 6.30 -2.91 -0.02 -1.51 16 47 H 0.15 -1.24 4.90 -2.91 -0.01 -1.26 16 48 H 0.10 0.07 7.96 -2.38 -0.02 0.05 16 49 H 0.39 -3.04 8.70 -74.06 -0.64 -3.69 16 50 H -0.28 -0.37 7.11 99.48 0.71 0.33 16 51 H -0.30 -1.58 7.11 99.48 0.71 -0.88 16 52 H 0.13 0.07 8.06 -2.91 -0.02 0.05 16 53 H 0.13 0.21 8.06 -2.91 -0.02 0.19 16 54 H 0.18 -0.75 8.06 -2.91 -0.02 -0.77 16 Total: 0.00 -28.89 458.67 -1.66 -30.55 By element: Atomic # 1 Polarization: -16.78 SS G_CDS: -0.40 Total: -17.18 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 6.05 Total: 10.67 kcal Atomic # 7 Polarization: -6.52 SS G_CDS: -6.36 Total: -12.88 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -3.00 Total: -10.93 kcal Atomic # 14 Polarization: -2.27 SS G_CDS: 2.04 Total: -0.22 kcal Total: -28.89 -1.66 -30.55 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_4549632.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.432 kcal (2) G-P(sol) polarization free energy of solvation -28.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds