Wall clock time and date at job start Sun Mar 7 2021 04:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30281 * 126.28072 * 2 1 4 4 N 1.28668 * 109.37783 * 179.73049 * 3 2 1 5 5 C 1.30274 * 109.37994 * 0.44215 * 4 3 2 6 6 C 1.50701 * 126.28327 * 179.82868 * 5 4 3 7 7 H 1.08994 * 112.85306 * 168.49566 * 6 5 4 8 8 C 1.53792 * 113.60961 * 299.68945 * 6 5 4 9 9 C 1.53787 * 87.07878 * 139.98184 * 8 6 5 10 10 H 1.08999 * 113.61268 * 89.19587 * 9 8 6 11 11 N 1.46492 * 113.61211 * 220.01970 * 9 8 6 12 12 C 1.34786 * 120.00073 * 203.46813 * 11 9 8 13 13 O 1.21278 * 119.99287 * 0.02562 * 12 11 9 14 14 C 1.50698 * 120.00122 * 179.97438 * 12 11 9 15 15 O 1.42902 * 109.46776 * 180.02562 * 14 12 11 16 16 C 1.35902 * 116.99410 * 180.02562 * 15 14 12 17 17 C 1.38720 * 120.04843 * 180.02562 * 16 15 14 18 18 N 1.48002 * 120.03180 * 359.97438 * 17 16 15 19 19 O 1.21799 * 119.99905 * 180.02562 * 18 17 16 20 20 O 1.21796 * 119.99692 * 0.02562 * 18 17 16 21 21 C 1.38168 * 119.93757 * 179.97438 * 17 16 15 22 22 C 1.38237 * 120.05874 * 0.02562 * 21 17 16 23 23 C 1.50697 * 119.94498 * 179.97438 * 22 21 17 24 24 O 1.42899 * 109.47435 * 300.00437 * 23 22 21 25 25 Si 1.86305 * 109.47442 * 180.02562 * 23 22 21 26 26 C 1.38291 * 120.11396 * 359.68307 * 22 21 17 27 27 C 1.38125 * 120.05217 * 0.60010 * 26 22 21 28 28 C 1.53788 * 87.17346 * 334.60911 * 9 8 6 29 29 O 1.34359 * 126.28337 * 179.97438 * 2 1 3 30 30 H 1.09005 * 109.47402 * 270.00528 * 1 2 3 31 31 H 1.09003 * 109.47052 * 30.00003 * 1 2 3 32 32 H 1.08997 * 109.47230 * 149.99826 * 1 2 3 33 33 H 1.08999 * 113.61382 * 25.43465 * 8 6 5 34 34 H 1.08996 * 113.69156 * 254.53546 * 8 6 5 35 35 H 0.97003 * 120.00350 * 23.47144 * 11 9 8 36 36 H 1.08998 * 109.46950 * 60.00535 * 14 12 11 37 37 H 1.08995 * 109.47513 * 300.00356 * 14 12 11 38 38 H 1.08006 * 119.96904 * 180.02562 * 21 17 16 39 39 H 1.08999 * 109.47259 * 60.00667 * 23 22 21 40 40 H 0.96699 * 113.99863 * 299.99688 * 24 23 22 41 41 H 1.48498 * 110.00274 * 180.02562 * 25 23 22 42 42 H 1.48502 * 109.99460 * 301.32146 * 25 23 22 43 43 H 1.08004 * 119.97798 * 180.31914 * 26 22 21 44 44 H 1.08002 * 120.03152 * 179.70250 * 27 26 22 45 45 H 1.08996 * 113.61523 * 139.93824 * 28 9 8 46 46 H 1.09003 * 113.61309 * 270.84483 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 0.0057 5 6 3.5653 -0.6254 0.0001 6 6 4.8176 -1.4638 0.0001 7 1 4.6211 -2.5180 0.1951 8 6 5.7214 -1.2211 -1.2202 9 6 6.9157 -1.3181 -0.2562 10 1 7.2948 -2.3324 -0.1315 11 7 7.9748 -0.3449 -0.5343 12 6 9.2363 -0.5866 -0.1258 13 8 9.4946 -1.6099 0.4717 14 6 10.3259 0.4142 -0.4123 15 8 11.5640 -0.0653 0.1161 16 6 12.6562 0.7246 -0.0579 17 6 13.8905 0.3204 0.4294 18 7 14.0194 -0.9716 1.1399 19 8 15.1033 -1.3257 1.5678 20 8 13.0415 -1.6806 1.2965 21 6 14.9994 1.1250 0.2508 22 6 14.8796 2.3320 -0.4123 23 6 16.0906 3.2078 -0.6051 24 8 16.6279 3.5653 0.6698 25 14 15.6007 4.7511 -1.5267 26 6 13.6514 2.7344 -0.9042 27 6 12.5386 1.9365 -0.7232 28 6 5.9530 -0.8788 0.8597 29 8 2.3021 -1.0831 0.0005 30 1 -0.3634 0.0001 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8899 -0.5138 33 1 5.5985 -0.2336 -1.6651 34 1 5.6883 -2.0242 -1.9564 35 1 7.7682 0.4734 -1.0125 36 1 10.0760 1.3670 0.0544 37 1 10.4197 0.5509 -1.4896 38 1 15.9608 0.8105 0.6295 39 1 16.8434 2.6660 -1.1777 40 1 16.0113 4.0514 1.2342 41 1 16.7865 5.6230 -1.7239 42 1 15.0108 4.3917 -2.8413 43 1 13.5612 3.6755 -1.4264 44 1 11.5786 2.2533 -1.1033 45 1 6.1056 -1.4067 1.8010 46 1 5.8935 0.2025 0.9844 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_4549638.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:07:57 Heat of formation + Delta-G solvation = -4.271175 kcal Electronic energy + Delta-G solvation = -34969.187776 eV Core-core repulsion = 29832.899070 eV Total energy + Delta-G solvation = -5136.288706 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 391.135 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.31258 -43.28762 -41.80308 -41.11442 -39.89395 -39.05847 -37.58729 -37.35797 -37.25804 -35.00444 -33.64532 -33.43447 -32.23726 -30.33348 -29.29326 -27.81694 -26.89417 -26.85594 -26.37423 -24.31365 -23.72277 -23.34871 -22.77800 -21.74069 -20.90935 -20.52122 -19.76865 -19.18805 -18.63361 -18.60199 -18.47468 -18.37227 -18.09297 -17.57296 -17.39692 -17.03144 -16.44440 -16.32108 -16.14411 -15.78739 -15.70252 -15.46770 -15.40843 -14.77912 -14.65328 -14.27850 -14.01515 -13.96444 -13.77558 -13.66141 -13.59928 -13.59257 -13.40535 -13.22527 -12.97606 -12.70391 -12.69713 -12.39768 -12.31616 -12.26485 -12.24744 -12.18749 -11.94739 -11.92017 -11.87059 -11.00311 -10.83250 -10.56383 -10.47546 -10.17054 -9.78230 -4.99381 -1.30587 -0.23748 0.06710 0.16438 0.36017 1.12614 1.24572 1.26641 1.31797 1.45086 1.63893 2.02232 2.05740 2.33947 2.78138 3.12409 3.18939 3.26352 3.36483 3.39991 3.47794 3.51945 3.64755 3.65669 3.71741 3.73576 3.80450 3.94795 4.03219 4.03890 4.29345 4.31094 4.36146 4.42253 4.51027 4.51391 4.53312 4.63776 4.63978 4.67883 4.70193 4.82443 4.84500 4.89467 5.02341 5.07744 5.08620 5.19789 5.44619 5.76463 6.42794 6.44317 6.73276 7.14300 7.20739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.167 3.833 3 N -0.330 5.330 4 N -0.309 5.309 5 C 0.175 3.825 6 C -0.022 4.022 7 H 0.145 0.855 8 C -0.113 4.113 9 C 0.131 3.869 10 H 0.114 0.886 11 N -0.698 5.698 12 C 0.511 3.489 13 O -0.561 6.561 14 C 0.022 3.978 15 O -0.291 6.291 16 C 0.194 3.806 17 C -0.105 4.105 18 N 0.035 4.965 19 O -0.206 6.206 20 O -0.170 6.170 21 C -0.004 4.004 22 C -0.150 4.150 23 C -0.082 4.082 24 O -0.558 6.558 25 Si 0.798 3.202 26 C -0.006 4.006 27 C -0.188 4.188 28 C -0.134 4.134 29 O -0.233 6.233 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.423 0.577 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.110 0.890 40 H 0.398 0.602 41 H -0.306 1.306 42 H -0.264 1.264 43 H 0.188 0.812 44 H 0.206 0.794 45 H 0.082 0.918 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.813 8.810 -6.874 14.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.044 4.044 3 N -0.177 5.177 4 N -0.154 5.154 5 C -0.036 4.036 6 C -0.042 4.042 7 H 0.163 0.837 8 C -0.152 4.152 9 C 0.025 3.975 10 H 0.132 0.868 11 N -0.352 5.352 12 C 0.297 3.703 13 O -0.438 6.438 14 C -0.055 4.055 15 O -0.201 6.201 16 C 0.145 3.855 17 C -0.190 4.190 18 N 0.545 4.455 19 O -0.412 6.412 20 O -0.385 6.385 21 C -0.023 4.023 22 C -0.152 4.152 23 C -0.190 4.190 24 O -0.366 6.366 25 Si 0.702 3.298 26 C -0.023 4.023 27 C -0.207 4.207 28 C -0.173 4.173 29 O -0.113 6.113 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.261 0.739 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.167 0.833 39 H 0.127 0.873 40 H 0.248 0.752 41 H -0.234 1.234 42 H -0.190 1.190 43 H 0.205 0.795 44 H 0.223 0.777 45 H 0.101 0.899 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.694 9.879 -7.598 14.646 hybrid contribution 0.096 -2.239 0.454 2.286 sum -7.598 7.640 -7.144 12.928 Atomic orbital electron populations 1.20700 0.77063 1.07278 1.06804 1.28961 0.99339 0.78863 0.97205 1.74372 0.96553 1.26945 1.19790 1.74210 1.12624 1.10051 1.18513 1.28228 0.85343 0.91438 0.98596 1.21262 0.82824 0.98977 1.01182 0.83731 1.23418 0.90979 1.05235 0.95590 1.22301 0.85225 0.94422 0.95502 0.86824 1.45585 1.06308 1.24418 1.58916 1.20483 0.84163 0.86970 0.78642 1.90849 1.82712 1.29118 1.41159 1.23146 0.80289 0.98277 1.03743 1.86468 1.15734 1.44325 1.73541 1.18959 0.84534 0.90780 0.91277 1.20861 0.96654 0.88479 1.13005 1.43887 0.99921 1.02953 0.98778 1.94506 1.15446 1.78146 1.53138 1.94671 1.28979 1.52724 1.62129 1.20828 0.96692 0.91833 0.92942 1.20448 0.97655 0.95097 1.01957 1.25468 0.95046 1.06254 0.92237 1.86528 1.44072 1.78459 1.27563 0.93795 0.82500 0.74633 0.78896 1.21727 0.89743 0.99314 0.91519 1.21815 1.03764 0.91765 1.03338 1.23615 0.92173 1.02816 0.98690 1.84816 1.17846 1.38738 1.69855 0.86618 0.86431 0.86859 0.87871 0.87557 0.73874 0.83785 0.83856 0.83288 0.87279 0.75194 1.23414 1.18971 0.79512 0.77698 0.89905 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.49 10.51 71.24 0.75 1.24 16 2 C 0.17 0.33 8.48 88.34 0.75 1.08 16 3 N -0.33 -2.57 12.22 -165.50 -2.02 -4.59 16 4 N -0.31 -2.04 11.83 -165.50 -1.96 -4.00 16 5 C 0.18 0.35 7.54 88.34 0.67 1.02 16 6 C -0.02 0.11 4.29 -10.95 -0.05 0.06 16 7 H 0.14 -1.20 8.14 -2.39 -0.02 -1.22 16 8 C -0.11 0.94 7.38 31.13 0.23 1.17 16 9 C 0.13 -0.71 4.21 45.52 0.19 -0.52 16 10 H 0.11 -0.23 7.50 -2.39 -0.02 -0.25 16 11 N -0.70 5.22 5.36 -440.02 -2.36 2.86 16 12 C 0.51 -0.26 7.91 87.65 0.69 0.43 16 13 O -0.56 -7.09 16.12 16.01 0.26 -6.83 16 14 C 0.02 -0.18 5.22 71.24 0.37 0.19 16 15 O -0.29 -1.08 7.68 -63.42 -0.49 -1.56 16 16 C 0.19 0.03 6.67 22.51 0.15 0.18 16 17 C -0.10 -0.71 6.87 36.48 0.25 -0.46 16 18 N 0.03 0.57 4.45 -46.24 -0.21 0.36 16 19 O -0.21 -3.85 18.45 18.89 0.35 -3.50 16 20 O -0.17 -3.60 17.24 25.61 0.44 -3.16 16 21 C 0.00 -0.01 9.11 22.25 0.20 0.20 16 22 C -0.15 0.85 5.39 -19.85 -0.11 0.74 16 23 C -0.08 0.49 2.82 71.24 0.20 0.69 16 24 O -0.56 1.88 12.77 -148.98 -1.90 -0.02 16 25 Si 0.80 -8.01 29.78 68.60 2.04 -5.97 16 26 C -0.01 0.07 8.66 22.26 0.19 0.26 16 27 C -0.19 2.08 9.04 22.37 0.20 2.28 16 28 C -0.13 0.53 7.43 31.18 0.23 0.76 16 29 O -0.23 -0.63 10.87 -3.59 -0.04 -0.67 16 30 H 0.12 -1.24 8.14 -2.38 -0.02 -1.26 16 31 H 0.12 -1.14 8.14 -2.39 -0.02 -1.16 16 32 H 0.11 -1.32 8.14 -2.39 -0.02 -1.34 16 33 H 0.10 -0.87 8.06 -2.39 -0.02 -0.89 16 34 H 0.11 -1.13 8.14 -2.39 -0.02 -1.14 16 35 H 0.42 -6.23 8.71 -92.71 -0.81 -7.04 16 36 H 0.14 -2.38 7.66 -2.39 -0.02 -2.40 16 37 H 0.14 -2.39 7.66 -2.39 -0.02 -2.41 16 38 H 0.15 0.61 7.61 -2.91 -0.02 0.58 16 39 H 0.11 -0.45 7.96 -2.39 -0.02 -0.46 16 40 H 0.40 -4.78 8.70 -74.06 -0.64 -5.42 16 41 H -0.31 0.06 7.11 99.48 0.71 0.77 16 42 H -0.26 2.13 7.10 99.48 0.71 2.84 16 43 H 0.19 -3.61 4.87 -2.91 -0.01 -3.62 16 44 H 0.21 -4.31 6.30 -2.91 -0.02 -4.33 16 45 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 46 H 0.10 -0.23 7.78 -2.39 -0.02 -0.25 16 Total: 0.00 -45.72 404.20 -1.28 -47.00 By element: Atomic # 1 Polarization: -28.92 SS G_CDS: -0.32 Total: -29.24 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 4.93 Total: 9.33 kcal Atomic # 7 Polarization: 1.18 SS G_CDS: -6.55 Total: -5.37 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -1.38 Total: -15.75 kcal Atomic # 14 Polarization: -8.01 SS G_CDS: 2.04 Total: -5.97 kcal Total: -45.72 -1.28 -47.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_4549638.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.729 kcal (2) G-P(sol) polarization free energy of solvation -45.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds