Wall clock time and date at job start Sun Mar 7 2021 04:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30276 * 126.27842 * 2 1 4 4 N 1.28665 * 109.38159 * 179.72904 * 3 2 1 5 5 C 1.30283 * 109.37917 * 0.44976 * 4 3 2 6 6 C 1.50700 * 126.28096 * 179.82294 * 5 4 3 7 7 H 1.09003 * 112.84345 * 190.88230 * 6 5 4 8 8 C 1.53779 * 113.69094 * 322.15252 * 6 5 4 9 9 C 1.53781 * 87.07808 * 139.99313 * 8 6 5 10 10 H 1.09006 * 113.68971 * 89.12767 * 9 8 6 11 11 N 1.46504 * 113.61449 * 220.01778 * 9 8 6 12 12 C 1.34773 * 119.99798 * 252.49963 * 11 9 8 13 13 O 1.21284 * 120.00454 * 0.02562 * 12 11 9 14 14 C 1.50702 * 120.00003 * 179.97438 * 12 11 9 15 15 O 1.42902 * 109.47512 * 180.02562 * 14 12 11 16 16 C 1.35899 * 116.99864 * 180.02562 * 15 14 12 17 17 C 1.38711 * 120.05043 * 180.02562 * 16 15 14 18 18 C 1.38165 * 119.94450 * 180.02562 * 17 16 15 19 19 C 1.50699 * 119.97727 * 179.72287 * 18 17 16 20 20 O 1.42895 * 109.47018 * 300.00266 * 19 18 17 21 21 Si 1.86298 * 109.47540 * 180.02562 * 19 18 17 22 22 C 1.38244 * 120.05319 * 359.97438 * 18 17 16 23 23 C 1.38287 * 120.11305 * 359.97438 * 22 18 17 24 24 C 1.38123 * 120.05390 * 0.02562 * 23 22 18 25 25 C 1.53778 * 113.61307 * 59.69290 * 6 5 4 26 26 O 1.34361 * 107.43360 * 359.55952 * 5 4 3 27 27 H 1.09003 * 109.47379 * 269.99072 * 1 2 3 28 28 H 1.08995 * 109.47413 * 29.99784 * 1 2 3 29 29 H 1.09005 * 109.46975 * 149.99780 * 1 2 3 30 30 H 1.08997 * 113.61665 * 25.44779 * 8 6 5 31 31 H 1.08998 * 113.61500 * 254.53841 * 8 6 5 32 32 H 0.96993 * 119.99850 * 72.49665 * 11 9 8 33 33 H 1.08997 * 109.47246 * 59.99484 * 14 12 11 34 34 H 1.09001 * 109.46817 * 300.00022 * 14 12 11 35 35 H 1.08000 * 120.03194 * 0.03854 * 17 16 15 36 36 H 1.09003 * 109.46812 * 59.99966 * 19 18 17 37 37 H 0.96701 * 113.99840 * 299.99729 * 20 19 18 38 38 H 1.48501 * 109.99959 * 58.68020 * 21 19 18 39 39 H 1.48489 * 110.00185 * 180.02562 * 21 19 18 40 40 H 1.08004 * 119.94705 * 179.97438 * 22 18 17 41 41 H 1.08001 * 119.97618 * 179.97438 * 23 22 18 42 42 H 1.08000 * 120.02757 * 180.02562 * 24 23 22 43 43 H 1.09001 * 113.61599 * 105.38859 * 25 6 5 44 44 H 1.08997 * 113.61659 * 334.47373 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2778 1.0502 0.0000 4 7 3.5089 0.6763 0.0057 5 6 3.5654 -0.6253 -0.0001 6 6 4.8177 -1.4636 -0.0001 7 1 4.6212 -2.5179 -0.1952 8 6 5.9523 -0.8793 -0.8581 9 6 6.9158 -1.3200 0.2565 10 1 7.2940 -2.3348 0.1327 11 7 7.9760 -0.3477 0.5341 12 6 9.2429 -0.6052 0.1533 13 8 9.5053 -1.6415 -0.4196 14 6 10.3334 0.3952 0.4383 15 8 11.5776 -0.1018 -0.0588 16 6 12.6714 0.6848 0.1189 17 6 13.9113 0.2644 -0.3395 18 6 15.0220 1.0657 -0.1572 19 6 16.3704 0.6069 -0.6494 20 8 16.7201 -0.6201 -0.0059 21 14 17.6498 1.9018 -0.2531 22 6 14.8983 2.2857 0.4810 23 6 13.6632 2.7076 0.9380 24 6 12.5498 1.9102 0.7581 25 6 5.7214 -1.2209 1.2202 26 8 2.3021 -1.0831 -0.0001 27 1 -0.3634 -0.0002 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 5.8935 0.2020 -0.9821 31 1 6.1036 -1.4068 -1.7998 32 1 7.7661 0.4812 0.9919 33 1 10.4089 0.5538 1.5140 34 1 10.0976 1.3394 -0.0525 35 1 14.0084 -0.6884 -0.8387 36 1 16.3305 0.4531 -1.7278 37 1 16.7742 -0.5574 0.9576 38 1 17.6915 2.1431 1.2116 39 1 18.9839 1.4615 -0.7339 40 1 15.7677 2.9106 0.6230 41 1 13.5691 3.6610 1.4366 42 1 11.5853 2.2403 1.1148 43 1 5.6865 -2.0243 1.9561 44 1 5.5996 -0.2330 1.6642 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14942244_4860298.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:08:11 Heat of formation + Delta-G solvation = -1.175537 kcal Electronic energy + Delta-G solvation = -28366.003548 eV Core-core repulsion = 24060.865514 eV Total energy + Delta-G solvation = -4305.138033 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.25238 -41.65992 -41.05316 -39.73823 -38.78060 -37.28877 -37.16995 -35.02890 -33.69080 -32.49943 -31.71886 -30.08525 -29.12394 -27.08127 -26.94455 -26.52429 -23.93435 -23.68988 -23.47678 -22.48343 -21.66376 -20.97435 -19.38279 -18.64265 -18.48348 -18.42505 -17.71695 -17.49696 -17.39595 -17.15041 -16.82463 -16.55825 -16.19450 -15.74227 -15.66336 -15.44998 -15.22863 -14.87349 -14.60736 -14.50594 -14.11704 -13.95714 -13.91219 -13.86708 -13.80451 -13.48779 -13.34703 -12.99946 -12.89003 -12.81062 -12.57299 -12.47059 -12.17954 -12.07946 -12.00019 -11.87661 -11.59096 -10.94249 -10.64485 -10.45898 -10.25596 -9.94154 -9.28254 -4.94444 0.08356 0.18523 0.39062 1.12129 1.26616 1.32841 1.41625 1.46269 1.61477 1.97562 2.49609 2.65088 2.71042 3.04543 3.18487 3.34638 3.39025 3.46138 3.49904 3.55189 3.61969 3.73620 3.86589 3.87561 3.93333 4.00303 4.17876 4.18069 4.24030 4.28678 4.33011 4.36581 4.44655 4.48208 4.54151 4.56166 4.60317 4.62781 4.72319 4.75565 4.93690 4.95784 5.21705 5.28687 5.33937 5.42448 5.63095 6.19108 6.34199 6.41967 7.01752 7.28453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.164 3.836 3 N -0.289 5.289 4 N -0.282 5.282 5 C 0.173 3.827 6 C -0.021 4.021 7 H 0.129 0.871 8 C -0.135 4.135 9 C 0.131 3.869 10 H 0.127 0.873 11 N -0.716 5.716 12 C 0.519 3.481 13 O -0.510 6.510 14 C 0.040 3.960 15 O -0.288 6.288 16 C 0.129 3.871 17 C -0.121 4.121 18 C -0.078 4.078 19 C -0.077 4.077 20 O -0.528 6.528 21 Si 0.690 3.310 22 C -0.153 4.153 23 C -0.073 4.073 24 C -0.206 4.206 25 C -0.130 4.130 26 O -0.225 6.225 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.406 0.594 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.136 0.864 36 H 0.121 0.879 37 H 0.376 0.624 38 H -0.260 1.260 39 H -0.257 1.257 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.091 0.909 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.424 3.112 2.535 5.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.047 4.047 3 N -0.136 5.136 4 N -0.128 5.128 5 C -0.038 4.038 6 C -0.042 4.042 7 H 0.146 0.854 8 C -0.175 4.175 9 C 0.026 3.974 10 H 0.145 0.855 11 N -0.369 5.369 12 C 0.303 3.697 13 O -0.384 6.384 14 C -0.039 4.039 15 O -0.201 6.201 16 C 0.083 3.917 17 C -0.139 4.139 18 C -0.079 4.079 19 C -0.187 4.187 20 O -0.334 6.334 21 Si 0.591 3.409 22 C -0.171 4.171 23 C -0.091 4.091 24 C -0.224 4.224 25 C -0.169 4.169 26 O -0.104 6.104 27 H 0.119 0.881 28 H 0.127 0.873 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.107 0.893 32 H 0.241 0.759 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.154 0.846 36 H 0.139 0.861 37 H 0.224 0.776 38 H -0.185 1.185 39 H -0.182 1.182 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.110 0.890 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.109 3.360 1.830 4.930 hybrid contribution -1.045 -1.384 1.212 2.116 sum -4.154 1.975 3.042 5.515 Atomic orbital electron populations 1.20411 0.79962 1.05985 1.05493 1.28108 0.97963 0.79487 0.99115 1.74442 0.95943 1.25515 1.17689 1.74308 1.12419 1.08973 1.17134 1.27674 0.84698 0.91605 0.99792 1.20988 0.84097 0.98608 1.00491 0.85354 1.23636 0.91812 1.03382 0.98641 1.22387 0.85024 0.94858 0.95175 0.85546 1.45724 1.06906 1.23054 1.61256 1.20076 0.83139 0.87431 0.79007 1.90792 1.82083 1.26068 1.39427 1.22469 0.83226 0.97141 1.01068 1.86170 1.13911 1.43923 1.76063 1.19035 0.86934 0.89978 0.95704 1.20270 0.88890 1.01560 1.03208 1.20101 0.95351 0.94420 0.98006 1.25104 0.97765 0.94482 1.01345 1.86618 1.91093 1.31169 1.24490 0.94916 0.77997 0.84755 0.83251 1.20946 0.98094 0.96471 1.01601 1.20909 0.91617 0.99156 0.97389 1.21305 1.00412 0.95308 1.05421 1.23507 0.92714 1.04582 0.96078 1.84792 1.17555 1.38454 1.69598 0.88084 0.87306 0.88702 0.87736 0.89321 0.75887 0.88684 0.88566 0.84598 0.86123 0.77608 1.18482 1.18194 0.85300 0.85070 0.85204 0.88991 0.88136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.20 10.51 36.00 0.38 0.58 16 2 C 0.16 0.21 8.48 -12.94 -0.11 0.10 16 3 N -0.29 -1.15 12.22 32.55 0.40 -0.75 16 4 N -0.28 -0.98 11.85 32.55 0.39 -0.60 16 5 C 0.17 0.22 7.53 -12.94 -0.10 0.12 16 6 C -0.02 0.04 4.29 -90.96 -0.39 -0.35 16 7 H 0.13 -0.48 8.14 -51.93 -0.42 -0.90 16 8 C -0.14 0.25 7.42 -25.92 -0.19 0.05 16 9 C 0.13 -0.28 4.24 -67.11 -0.28 -0.57 16 10 H 0.13 -0.15 7.47 -51.93 -0.39 -0.54 16 11 N -0.72 1.66 5.35 -53.01 -0.28 1.38 16 12 C 0.52 0.41 7.91 -10.99 -0.09 0.33 16 13 O -0.51 -2.89 16.10 -14.36 -0.23 -3.13 16 14 C 0.04 -0.05 5.22 36.01 0.19 0.14 16 15 O -0.29 -0.82 9.67 -39.33 -0.38 -1.20 16 16 C 0.13 0.24 6.69 -39.22 -0.26 -0.02 16 17 C -0.12 -0.28 9.55 -39.43 -0.38 -0.65 16 18 C -0.08 -0.06 5.39 -104.65 -0.56 -0.62 16 19 C -0.08 -0.02 2.82 36.01 0.10 0.08 16 20 O -0.53 -1.00 12.77 -35.23 -0.45 -1.45 16 21 Si 0.69 -0.58 29.79 -169.99 -5.06 -5.64 16 22 C -0.15 0.06 8.67 -39.56 -0.34 -0.28 16 23 C -0.07 0.06 10.04 -39.61 -0.40 -0.33 16 24 C -0.21 0.08 9.04 -39.44 -0.36 -0.28 16 25 C -0.13 0.42 7.38 -25.92 -0.19 0.22 16 26 O -0.22 -0.37 10.87 5.39 0.06 -0.31 16 27 H 0.10 -0.47 8.14 -51.93 -0.42 -0.89 16 28 H 0.11 -0.45 8.14 -51.93 -0.42 -0.87 16 29 H 0.09 -0.45 8.14 -51.93 -0.42 -0.88 16 30 H 0.10 -0.09 7.79 -51.93 -0.40 -0.50 16 31 H 0.09 -0.16 8.14 -51.93 -0.42 -0.58 16 32 H 0.41 -2.04 8.73 -40.82 -0.36 -2.40 16 33 H 0.10 -0.35 7.66 -51.93 -0.40 -0.75 16 34 H 0.10 -0.34 7.66 -51.93 -0.40 -0.74 16 35 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 36 H 0.12 -0.04 7.96 -51.93 -0.41 -0.45 16 37 H 0.38 -0.38 8.70 45.56 0.40 0.02 16 38 H -0.26 -0.26 7.11 56.52 0.40 0.14 16 39 H -0.26 -0.64 7.11 56.52 0.40 -0.24 16 40 H 0.13 -0.28 4.87 -52.48 -0.26 -0.54 16 41 H 0.13 -0.42 8.06 -52.49 -0.42 -0.84 16 42 H 0.13 -0.39 6.30 -52.49 -0.33 -0.72 16 43 H 0.09 -0.38 8.14 -51.93 -0.42 -0.80 16 44 H 0.10 -0.29 8.07 -51.93 -0.42 -0.71 16 LS Contribution 378.18 15.07 5.70 5.70 Total: 0.00 -12.29 378.18 -8.40 -20.68 By element: Atomic # 1 Polarization: -7.66 SS G_CDS: -5.55 Total: -13.20 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -2.98 Total: -1.47 kcal Atomic # 7 Polarization: -0.47 SS G_CDS: 0.50 Total: 0.03 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -1.00 Total: -6.09 kcal Atomic # 14 Polarization: -0.58 SS G_CDS: -5.06 Total: -5.64 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -12.29 -8.40 -20.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_4860298.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.509 kcal (2) G-P(sol) polarization free energy of solvation -12.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds