Wall clock time and date at job start Sun Mar 7 2021 04:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30276 * 126.27842 * 2 1 4 4 N 1.28665 * 109.38159 * 179.72904 * 3 2 1 5 5 C 1.30283 * 109.37917 * 0.44976 * 4 3 2 6 6 C 1.50700 * 126.28096 * 179.82294 * 5 4 3 7 7 H 1.09003 * 112.84345 * 190.88230 * 6 5 4 8 8 C 1.53779 * 113.69094 * 322.15252 * 6 5 4 9 9 C 1.53781 * 87.07808 * 139.99313 * 8 6 5 10 10 H 1.09006 * 113.68971 * 89.12767 * 9 8 6 11 11 N 1.46504 * 113.61449 * 220.01778 * 9 8 6 12 12 C 1.34773 * 119.99798 * 252.49963 * 11 9 8 13 13 O 1.21284 * 120.00454 * 0.02562 * 12 11 9 14 14 C 1.50702 * 120.00003 * 179.97438 * 12 11 9 15 15 O 1.42902 * 109.47512 * 180.02562 * 14 12 11 16 16 C 1.35899 * 116.99864 * 180.02562 * 15 14 12 17 17 C 1.38711 * 120.05043 * 180.02562 * 16 15 14 18 18 C 1.38165 * 119.94450 * 180.02562 * 17 16 15 19 19 C 1.50699 * 119.97727 * 179.72287 * 18 17 16 20 20 O 1.42895 * 109.47018 * 300.00266 * 19 18 17 21 21 Si 1.86298 * 109.47540 * 180.02562 * 19 18 17 22 22 C 1.38244 * 120.05319 * 359.97438 * 18 17 16 23 23 C 1.38287 * 120.11305 * 359.97438 * 22 18 17 24 24 C 1.38123 * 120.05390 * 0.02562 * 23 22 18 25 25 C 1.53778 * 113.61307 * 59.69290 * 6 5 4 26 26 O 1.34361 * 107.43360 * 359.55952 * 5 4 3 27 27 H 1.09003 * 109.47379 * 269.99072 * 1 2 3 28 28 H 1.08995 * 109.47413 * 29.99784 * 1 2 3 29 29 H 1.09005 * 109.46975 * 149.99780 * 1 2 3 30 30 H 1.08997 * 113.61665 * 25.44779 * 8 6 5 31 31 H 1.08998 * 113.61500 * 254.53841 * 8 6 5 32 32 H 0.96993 * 119.99850 * 72.49665 * 11 9 8 33 33 H 1.08997 * 109.47246 * 59.99484 * 14 12 11 34 34 H 1.09001 * 109.46817 * 300.00022 * 14 12 11 35 35 H 1.08000 * 120.03194 * 0.03854 * 17 16 15 36 36 H 1.09003 * 109.46812 * 59.99966 * 19 18 17 37 37 H 0.96701 * 113.99840 * 299.99729 * 20 19 18 38 38 H 1.48501 * 109.99959 * 58.68020 * 21 19 18 39 39 H 1.48489 * 110.00185 * 180.02562 * 21 19 18 40 40 H 1.08004 * 119.94705 * 179.97438 * 22 18 17 41 41 H 1.08001 * 119.97618 * 179.97438 * 23 22 18 42 42 H 1.08000 * 120.02757 * 180.02562 * 24 23 22 43 43 H 1.09001 * 113.61599 * 105.38859 * 25 6 5 44 44 H 1.08997 * 113.61659 * 334.47373 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2778 1.0502 0.0000 4 7 3.5089 0.6763 0.0057 5 6 3.5654 -0.6253 -0.0001 6 6 4.8177 -1.4636 -0.0001 7 1 4.6212 -2.5179 -0.1952 8 6 5.9523 -0.8793 -0.8581 9 6 6.9158 -1.3200 0.2565 10 1 7.2940 -2.3348 0.1327 11 7 7.9760 -0.3477 0.5341 12 6 9.2429 -0.6052 0.1533 13 8 9.5053 -1.6415 -0.4196 14 6 10.3334 0.3952 0.4383 15 8 11.5776 -0.1018 -0.0588 16 6 12.6714 0.6848 0.1189 17 6 13.9113 0.2644 -0.3395 18 6 15.0220 1.0657 -0.1572 19 6 16.3704 0.6069 -0.6494 20 8 16.7201 -0.6201 -0.0059 21 14 17.6498 1.9018 -0.2531 22 6 14.8983 2.2857 0.4810 23 6 13.6632 2.7076 0.9380 24 6 12.5498 1.9102 0.7581 25 6 5.7214 -1.2209 1.2202 26 8 2.3021 -1.0831 -0.0001 27 1 -0.3634 -0.0002 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 5.8935 0.2020 -0.9821 31 1 6.1036 -1.4068 -1.7998 32 1 7.7661 0.4812 0.9919 33 1 10.4089 0.5538 1.5140 34 1 10.0976 1.3394 -0.0525 35 1 14.0084 -0.6884 -0.8387 36 1 16.3305 0.4531 -1.7278 37 1 16.7742 -0.5574 0.9576 38 1 17.6915 2.1431 1.2116 39 1 18.9839 1.4615 -0.7339 40 1 15.7677 2.9106 0.6230 41 1 13.5691 3.6610 1.4366 42 1 11.5853 2.2403 1.1148 43 1 5.6865 -2.0243 1.9561 44 1 5.5996 -0.2330 1.6642 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_4860298.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:08:11 Heat of formation + Delta-G solvation = -8.341244 kcal Electronic energy + Delta-G solvation = -28366.314276 eV Core-core repulsion = 24060.865514 eV Total energy + Delta-G solvation = -4305.448762 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.33053 -41.65331 -41.01016 -39.72033 -38.83605 -37.34150 -37.27570 -35.03928 -33.63454 -32.48207 -31.68903 -30.01008 -29.05989 -26.94348 -26.91402 -26.51889 -23.94584 -23.66974 -23.50166 -22.48003 -21.64149 -20.86892 -19.37623 -18.63473 -18.52293 -18.47241 -17.73965 -17.47317 -17.41226 -17.11199 -16.81228 -16.42690 -16.23961 -15.74743 -15.65525 -15.45292 -15.23263 -14.80991 -14.58957 -14.28345 -14.14621 -13.97009 -13.79671 -13.65797 -13.60683 -13.50702 -13.37269 -13.00221 -12.99202 -12.73227 -12.59094 -12.37697 -12.11360 -12.02912 -11.95739 -11.89259 -11.60904 -11.02670 -10.68562 -10.49611 -10.21448 -9.92676 -9.28497 -4.90550 0.04967 0.20773 0.39504 1.15336 1.23250 1.28691 1.39240 1.52314 1.62378 1.97064 2.56519 2.67016 2.77776 3.17748 3.33582 3.39843 3.44840 3.55518 3.62886 3.66289 3.70829 3.84921 4.00504 4.01127 4.07941 4.13329 4.25178 4.29485 4.36588 4.40545 4.48110 4.52570 4.55115 4.61077 4.64337 4.65404 4.68560 4.79455 4.86341 4.98797 5.01071 5.05221 5.24833 5.37378 5.40680 5.45179 5.69573 6.26206 6.43372 6.46235 7.07139 7.19173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.168 3.832 3 N -0.331 5.331 4 N -0.310 5.310 5 C 0.175 3.825 6 C -0.020 4.020 7 H 0.148 0.852 8 C -0.134 4.134 9 C 0.129 3.871 10 H 0.117 0.883 11 N -0.699 5.699 12 C 0.516 3.484 13 O -0.569 6.569 14 C 0.036 3.964 15 O -0.322 6.322 16 C 0.113 3.887 17 C -0.149 4.149 18 C -0.082 4.082 19 C -0.094 4.094 20 O -0.551 6.551 21 Si 0.784 3.216 22 C -0.157 4.157 23 C -0.071 4.071 24 C -0.203 4.203 25 C -0.115 4.115 26 O -0.232 6.232 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.421 0.579 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.386 0.614 38 H -0.277 1.277 39 H -0.305 1.305 40 H 0.149 0.851 41 H 0.162 0.838 42 H 0.160 0.840 43 H 0.107 0.893 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.463 4.654 3.911 8.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.043 4.043 3 N -0.178 5.178 4 N -0.155 5.155 5 C -0.036 4.036 6 C -0.041 4.041 7 H 0.165 0.835 8 C -0.173 4.173 9 C 0.024 3.976 10 H 0.135 0.865 11 N -0.353 5.353 12 C 0.303 3.697 13 O -0.447 6.447 14 C -0.042 4.042 15 O -0.236 6.236 16 C 0.068 3.932 17 C -0.168 4.168 18 C -0.083 4.083 19 C -0.202 4.202 20 O -0.359 6.359 21 Si 0.688 3.312 22 C -0.174 4.174 23 C -0.089 4.089 24 C -0.221 4.221 25 C -0.154 4.154 26 O -0.112 6.112 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.131 0.869 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.260 0.740 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.130 0.870 36 H 0.137 0.863 37 H 0.235 0.765 38 H -0.203 1.203 39 H -0.233 1.233 40 H 0.166 0.834 41 H 0.180 0.820 42 H 0.177 0.823 43 H 0.125 0.875 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.206 4.951 3.231 7.256 hybrid contribution -0.775 -1.896 0.772 2.189 sum -4.981 3.056 4.002 7.083 Atomic orbital electron populations 1.20706 0.76991 1.07223 1.06915 1.28974 0.99350 0.78841 0.97120 1.74371 0.96548 1.27012 1.19843 1.74220 1.12662 1.10130 1.18523 1.28227 0.85380 0.91417 0.98611 1.21223 0.82756 0.99062 1.01017 0.83472 1.23580 0.92161 1.02794 0.98756 1.22348 0.85151 0.94463 0.95626 0.86537 1.45630 1.05990 1.23495 1.60142 1.20528 0.84195 0.86971 0.78019 1.90766 1.83063 1.28537 1.42356 1.22740 0.81225 0.97150 1.03060 1.86120 1.15252 1.45317 1.76870 1.19192 0.86440 0.90968 0.96564 1.20287 0.90306 1.01429 1.04750 1.20136 0.94802 0.94934 0.98392 1.25463 0.98636 0.94655 1.01430 1.86578 1.91257 1.32532 1.25545 0.93880 0.73860 0.82872 0.80541 1.21216 0.99345 0.95945 1.00939 1.21330 0.90978 1.00048 0.96508 1.21634 1.02072 0.94084 1.04308 1.23434 0.91098 1.05162 0.95721 1.84813 1.17789 1.38706 1.69869 0.86371 0.86542 0.86894 0.88612 0.89618 0.74047 0.85695 0.85781 0.86953 0.86254 0.76464 1.20290 1.23338 0.83368 0.82033 0.82276 0.87471 0.88105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.46 10.51 71.23 0.75 1.21 16 2 C 0.17 0.44 8.48 88.34 0.75 1.19 16 3 N -0.33 -2.90 12.22 -165.50 -2.02 -4.93 16 4 N -0.31 -2.41 11.85 -165.50 -1.96 -4.37 16 5 C 0.18 0.50 7.53 88.34 0.67 1.16 16 6 C -0.02 0.09 4.29 -11.02 -0.05 0.04 16 7 H 0.15 -1.19 8.14 -2.39 -0.02 -1.21 16 8 C -0.13 0.41 7.42 31.12 0.23 0.64 16 9 C 0.13 -0.53 4.24 45.52 0.19 -0.33 16 10 H 0.12 -0.16 7.47 -2.38 -0.02 -0.17 16 11 N -0.70 3.32 5.35 -440.02 -2.36 0.96 16 12 C 0.52 1.17 7.91 87.66 0.69 1.86 16 13 O -0.57 -7.70 16.10 15.99 0.26 -7.44 16 14 C 0.04 -0.10 5.22 71.24 0.37 0.27 16 15 O -0.32 -2.26 9.67 -73.37 -0.71 -2.97 16 16 C 0.11 0.51 6.69 22.50 0.15 0.66 16 17 C -0.15 -0.99 9.55 22.37 0.21 -0.78 16 18 C -0.08 -0.19 5.39 -19.88 -0.11 -0.30 16 19 C -0.09 -0.17 2.82 71.24 0.20 0.03 16 20 O -0.55 -3.09 12.77 -148.98 -1.90 -5.00 16 21 Si 0.78 -1.36 29.79 68.60 2.04 0.69 16 22 C -0.16 0.30 8.67 22.28 0.19 0.50 16 23 C -0.07 0.28 10.04 22.25 0.22 0.50 16 24 C -0.20 0.47 9.04 22.36 0.20 0.67 16 25 C -0.12 0.80 7.38 31.12 0.23 1.03 16 26 O -0.23 -0.76 10.87 -3.62 -0.04 -0.80 16 27 H 0.12 -1.27 8.14 -2.39 -0.02 -1.29 16 28 H 0.12 -1.04 8.14 -2.39 -0.02 -1.06 16 29 H 0.11 -1.25 8.14 -2.38 -0.02 -1.27 16 30 H 0.10 -0.09 7.79 -2.39 -0.02 -0.11 16 31 H 0.09 -0.21 8.14 -2.39 -0.02 -0.23 16 32 H 0.42 -4.66 8.73 -92.71 -0.81 -5.47 16 33 H 0.13 -1.15 7.66 -2.39 -0.02 -1.16 16 34 H 0.12 -1.09 7.66 -2.39 -0.02 -1.11 16 35 H 0.11 1.13 8.06 -2.91 -0.02 1.11 16 36 H 0.12 0.14 7.96 -2.39 -0.02 0.12 16 37 H 0.39 -0.19 8.70 -74.06 -0.64 -0.83 16 38 H -0.28 -0.29 7.11 99.48 0.71 0.42 16 39 H -0.30 -1.91 7.11 99.48 0.71 -1.20 16 40 H 0.15 -0.95 4.87 -2.91 -0.01 -0.96 16 41 H 0.16 -1.63 8.06 -2.91 -0.02 -1.65 16 42 H 0.16 -1.44 6.30 -2.91 -0.02 -1.46 16 43 H 0.11 -1.02 8.14 -2.39 -0.02 -1.03 16 44 H 0.10 -0.66 8.07 -2.39 -0.02 -0.68 16 Total: 0.00 -32.62 378.18 -2.13 -34.74 By element: Atomic # 1 Polarization: -18.90 SS G_CDS: -0.35 Total: -19.24 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 4.91 Total: 8.36 kcal Atomic # 7 Polarization: -2.00 SS G_CDS: -6.34 Total: -8.34 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -2.39 Total: -16.21 kcal Atomic # 14 Polarization: -1.36 SS G_CDS: 2.04 Total: 0.69 kcal Total: -32.62 -2.13 -34.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_4860298.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.403 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds