Wall clock time and date at job start Sun Mar 7 2021 04:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35891 * 116.99942 * 2 1 4 4 C 1.38610 * 120.02935 * 180.27667 * 3 2 1 5 5 C 1.38657 * 119.89296 * 180.21150 * 4 3 2 6 6 O 1.35897 * 120.02878 * 179.80018 * 5 4 3 7 7 C 1.42895 * 116.99963 * 359.71719 * 6 5 4 8 8 C 1.50703 * 109.47034 * 180.02562 * 7 6 5 9 9 O 1.21278 * 120.00183 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99755 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99531 * 180.02562 * 10 8 7 12 12 H 1.08997 * 112.91343 * 23.75029 * 11 10 8 13 13 C 1.53781 * 113.61225 * 155.00207 * 11 10 8 14 14 C 1.53786 * 87.17350 * 139.93836 * 13 11 10 15 15 H 1.08993 * 113.61491 * 89.15923 * 14 13 11 16 16 C 1.50700 * 113.61132 * 220.06314 * 14 13 11 17 17 N 1.30277 * 126.28442 * 59.69141 * 16 14 13 18 18 N 1.28670 * 109.37896 * 179.82830 * 17 16 14 19 19 C 1.30277 * 109.38117 * 0.43603 * 18 17 16 20 20 C 1.50696 * 126.28196 * 179.73291 * 19 18 17 21 21 O 1.34360 * 126.28060 * 239.99782 * 16 14 13 22 22 C 1.53782 * 113.61191 * 252.49880 * 11 10 8 23 23 C 1.38752 * 119.94404 * 359.51480 * 5 4 3 24 24 C 1.50704 * 119.97394 * 180.27611 * 23 5 4 25 25 O 1.42894 * 109.47168 * 75.00498 * 24 23 5 26 26 Si 1.86298 * 109.46943 * 195.00239 * 24 23 5 27 27 C 1.38199 * 120.05408 * 0.25794 * 23 5 4 28 28 C 1.38155 * 120.10955 * 359.97438 * 27 23 5 29 29 H 1.09005 * 109.46859 * 299.99037 * 1 2 3 30 30 H 1.08989 * 109.47516 * 59.99534 * 1 2 3 31 31 H 1.09000 * 109.46837 * 179.97438 * 1 2 3 32 32 H 1.07995 * 120.05584 * 359.97438 * 4 3 2 33 33 H 1.08994 * 109.47399 * 60.00256 * 7 6 5 34 34 H 1.09007 * 109.47181 * 300.00235 * 7 6 5 35 35 H 0.96997 * 119.99692 * 0.02562 * 10 8 7 36 36 H 1.09002 * 113.61445 * 254.52836 * 13 11 10 37 37 H 1.09002 * 113.61408 * 25.34566 * 13 11 10 38 38 H 1.08997 * 109.47444 * 270.00291 * 20 19 18 39 39 H 1.09003 * 109.46960 * 30.00481 * 20 19 18 40 40 H 1.08997 * 109.47051 * 150.00416 * 20 19 18 41 41 H 1.08997 * 113.61668 * 334.56642 * 22 11 10 42 42 H 1.08998 * 113.61674 * 105.39151 * 22 11 10 43 43 H 1.08996 * 109.46899 * 315.00152 * 24 23 5 44 44 H 0.96699 * 114.00545 * 179.97438 * 25 24 23 45 45 H 1.48502 * 109.99655 * 178.68227 * 26 24 23 46 46 H 1.48502 * 110.00156 * 299.99959 * 26 24 23 47 47 H 1.08007 * 119.94546 * 179.97438 * 27 23 5 48 48 H 1.08001 * 119.97531 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4301 1.2841 -0.0058 5 6 4.0567 2.5210 -0.0013 6 8 5.4136 2.5960 -0.0029 7 6 6.1316 1.3606 -0.0029 8 6 7.6125 1.6403 -0.0041 9 8 8.0134 2.7848 -0.0044 10 7 8.4912 0.6183 -0.0038 11 6 9.9308 0.8902 -0.0044 12 1 10.1773 1.8722 0.3993 13 6 10.7732 -0.2500 0.5914 14 6 11.7881 0.0144 -0.5334 15 1 12.5433 0.7564 -0.2745 16 6 12.3773 -1.2414 -1.1223 17 7 11.7180 -2.2042 -1.7017 18 7 12.5420 -3.1143 -2.0869 19 6 13.7539 -2.7675 -1.7580 20 6 15.0100 -3.5574 -2.0213 21 8 13.6783 -1.5764 -1.1410 22 6 10.6143 0.5874 -1.3483 23 6 3.2971 3.6821 -0.0013 24 6 3.9774 5.0269 -0.0027 25 8 4.5022 5.2938 -1.3047 26 14 2.7442 6.3471 0.4524 27 6 1.9172 3.6065 -0.0003 28 6 1.2906 2.3752 0.0001 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 4.0196 0.3792 -0.0099 33 1 5.8690 0.7877 -0.8922 34 1 5.8709 0.7888 0.8877 35 1 8.1705 -0.2971 -0.0032 36 1 11.1591 -0.0333 1.5875 37 1 10.2941 -1.2269 0.5264 38 1 15.2034 -4.2233 -1.1804 39 1 14.8850 -4.1464 -2.9299 40 1 15.8500 -2.8738 -2.1442 41 1 10.0923 -0.1607 -1.9449 42 1 10.8706 1.4801 -1.9188 43 1 4.7905 5.0235 0.7231 44 1 4.9545 6.1452 -1.3796 45 1 3.4100 7.6741 0.4855 46 1 1.6304 6.3620 -0.5297 47 1 1.3276 4.5115 0.0002 48 1 0.2120 2.3186 0.0005 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_4974312.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:08:19 Heat of formation + Delta-G solvation = -40.146679 kcal Electronic energy + Delta-G solvation = -33233.914300 eV Core-core repulsion = 28452.866540 eV Total energy + Delta-G solvation = -4781.047760 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.156 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.33621 -41.85065 -41.22497 -40.15496 -39.36085 -38.21098 -37.28182 -37.08950 -35.02973 -33.63616 -32.40198 -31.48595 -30.08841 -29.16681 -28.36103 -26.91639 -26.66996 -26.06909 -24.19270 -23.64963 -23.17751 -22.38090 -21.72045 -20.90433 -19.90219 -18.67169 -18.55441 -18.52047 -18.38595 -17.85401 -17.46004 -17.36892 -17.14040 -16.86871 -16.65450 -16.42151 -15.92749 -15.67113 -15.59643 -15.44553 -15.21516 -15.09294 -14.52796 -14.28583 -14.02051 -13.81655 -13.77858 -13.67110 -13.61225 -13.56197 -13.44096 -13.36577 -13.20640 -12.99582 -12.72902 -12.51361 -12.42534 -12.35964 -12.00142 -11.94776 -11.89440 -11.75197 -11.60842 -11.02748 -10.50311 -10.39910 -10.21035 -9.70819 -9.10767 -4.93701 0.04456 0.18763 0.29842 1.14667 1.22736 1.31121 1.39113 1.47006 1.59363 1.91840 2.24185 2.52397 2.55930 2.77111 3.17430 3.33185 3.44387 3.48030 3.56137 3.62657 3.70622 3.71481 3.88155 3.96146 4.00295 4.04419 4.05618 4.18889 4.28992 4.30836 4.36179 4.39951 4.42411 4.45663 4.48009 4.52103 4.60654 4.61504 4.64684 4.67969 4.78761 4.79501 4.86023 5.00350 5.00558 5.05017 5.22313 5.29136 5.40059 5.46270 6.10972 6.34219 6.40635 6.61118 7.06094 7.18732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.329 6.329 3 C 0.164 3.836 4 C -0.252 4.252 5 C 0.177 3.823 6 O -0.300 6.300 7 C 0.031 3.969 8 C 0.520 3.480 9 O -0.563 6.563 10 N -0.700 5.700 11 C 0.131 3.869 12 H 0.120 0.880 13 C -0.115 4.115 14 C -0.020 4.020 15 H 0.149 0.851 16 C 0.176 3.824 17 N -0.312 5.312 18 N -0.332 5.332 19 C 0.168 3.832 20 C -0.061 4.061 21 O -0.231 6.231 22 C -0.135 4.135 23 C -0.160 4.160 24 C -0.080 4.080 25 O -0.557 6.557 26 Si 0.778 3.222 27 C -0.042 4.042 28 C -0.238 4.238 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.117 0.883 32 H 0.155 0.845 33 H 0.115 0.885 34 H 0.126 0.874 35 H 0.420 0.580 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.388 0.612 45 H -0.290 1.290 46 H -0.282 1.282 47 H 0.151 0.849 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.399 -3.577 4.938 6.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.242 6.242 3 C 0.118 3.882 4 C -0.271 4.271 5 C 0.130 3.870 6 O -0.213 6.213 7 C -0.047 4.047 8 C 0.306 3.694 9 O -0.440 6.440 10 N -0.354 5.354 11 C 0.026 3.974 12 H 0.137 0.863 13 C -0.154 4.154 14 C -0.040 4.040 15 H 0.167 0.833 16 C -0.036 4.036 17 N -0.157 5.157 18 N -0.178 5.178 19 C -0.043 4.043 20 C -0.118 4.118 21 O -0.111 6.111 22 C -0.175 4.175 23 C -0.161 4.161 24 C -0.187 4.187 25 O -0.366 6.366 26 Si 0.682 3.318 27 C -0.060 4.060 28 C -0.257 4.257 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.135 0.865 32 H 0.173 0.827 33 H 0.133 0.867 34 H 0.144 0.856 35 H 0.258 0.742 36 H 0.127 0.873 37 H 0.117 0.883 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.087 0.913 44 H 0.237 0.763 45 H -0.217 1.217 46 H -0.209 1.209 47 H 0.169 0.831 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.749 -3.374 4.092 5.356 hybrid contribution 1.648 0.430 -0.755 1.863 sum 0.899 -2.943 3.337 4.539 Atomic orbital electron populations 1.23410 0.76004 1.05741 1.02690 1.86054 1.23767 1.26462 1.87937 1.18853 0.91685 0.84927 0.92724 1.20557 0.93409 0.97427 1.15704 1.18550 0.81854 0.93078 0.93484 1.86182 1.15293 1.31637 1.88140 1.22767 0.88753 0.86538 1.06608 1.20365 0.88288 0.85230 0.75488 1.90753 1.80617 1.22920 1.49731 1.45641 1.05610 1.09596 1.74538 1.22348 0.78502 1.00398 0.96176 0.86260 1.23429 0.93991 0.99450 0.98538 1.21253 0.96702 0.88179 0.97856 0.83289 1.28225 0.77121 0.99703 0.98520 1.74227 1.27359 1.00012 1.14113 1.74373 0.99186 1.22686 1.21563 1.28986 0.99703 0.83183 0.92438 1.20705 0.86769 0.98291 1.06027 1.84811 1.30700 1.34443 1.61169 1.23620 0.94269 1.01783 0.97786 1.18752 0.93107 0.92394 1.11881 1.24965 1.04771 1.01670 0.87319 1.86559 1.76446 1.42809 1.30823 0.94181 0.76595 0.73656 0.87405 1.20903 0.92116 0.98770 0.94173 1.21382 1.01648 0.91150 1.11495 0.90961 0.91650 0.86451 0.82721 0.86701 0.85612 0.74198 0.87272 0.88289 0.86348 0.86585 0.86854 0.88894 0.89603 0.91282 0.76286 1.21700 1.20896 0.83134 0.82435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 113.37 1.11 1.04 16 2 O -0.33 -0.79 10.49 -92.33 -0.97 -1.76 16 3 C 0.16 0.62 6.68 22.49 0.15 0.77 16 4 C -0.25 -1.03 8.97 22.46 0.20 -0.83 16 5 C 0.18 1.32 6.66 22.49 0.15 1.47 16 6 O -0.30 -2.65 8.99 -73.36 -0.66 -3.31 16 7 C 0.03 0.01 5.22 71.24 0.37 0.38 16 8 C 0.52 1.92 7.91 87.66 0.69 2.61 16 9 O -0.56 -7.75 16.10 16.01 0.26 -7.49 16 10 N -0.70 2.25 5.35 -440.03 -2.36 -0.11 16 11 C 0.13 -0.42 4.24 45.52 0.19 -0.23 16 12 H 0.12 -0.13 7.47 -2.39 -0.02 -0.15 16 13 C -0.12 0.71 7.37 31.12 0.23 0.94 16 14 C -0.02 0.07 4.30 -10.95 -0.05 0.02 16 15 H 0.15 -1.15 8.14 -2.39 -0.02 -1.17 16 16 C 0.18 0.64 7.53 88.34 0.67 1.31 16 17 N -0.31 -2.77 11.84 -165.50 -1.96 -4.73 16 18 N -0.33 -3.21 12.22 -165.50 -2.02 -5.23 16 19 C 0.17 0.56 8.48 88.34 0.75 1.31 16 20 C -0.06 0.43 10.51 71.23 0.75 1.18 16 21 O -0.23 -0.90 10.87 -3.60 -0.04 -0.94 16 22 C -0.14 0.26 7.43 31.18 0.23 0.49 16 23 C -0.16 -1.17 5.31 -19.75 -0.10 -1.27 16 24 C -0.08 -0.52 2.37 71.24 0.17 -0.35 16 25 O -0.56 -5.65 12.86 -148.98 -1.92 -7.56 16 26 Si 0.78 0.92 30.19 68.60 2.07 3.00 16 27 C -0.04 -0.14 8.65 22.24 0.19 0.05 16 28 C -0.24 -0.40 9.04 22.38 0.20 -0.20 16 29 H 0.07 -0.53 7.66 -2.38 -0.02 -0.55 16 30 H 0.06 -0.40 7.66 -2.39 -0.02 -0.42 16 31 H 0.12 -0.95 8.14 -2.39 -0.02 -0.97 16 32 H 0.16 -0.11 6.30 -2.91 -0.02 -0.12 16 33 H 0.12 -0.45 7.65 -2.39 -0.02 -0.47 16 34 H 0.13 -0.77 7.67 -2.38 -0.02 -0.79 16 35 H 0.42 -3.74 8.73 -92.71 -0.81 -4.55 16 36 H 0.11 -0.99 8.14 -2.39 -0.02 -1.01 16 37 H 0.10 -0.53 8.07 -2.39 -0.02 -0.55 16 38 H 0.12 -1.21 8.14 -2.39 -0.02 -1.23 16 39 H 0.12 -0.97 8.14 -2.39 -0.02 -0.99 16 40 H 0.11 -1.20 8.14 -2.39 -0.02 -1.22 16 41 H 0.09 0.06 7.79 -2.39 -0.02 0.04 16 42 H 0.09 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.07 0.48 7.82 -2.39 -0.02 0.46 16 44 H 0.39 1.04 8.74 -74.06 -0.65 0.39 16 45 H -0.29 -1.63 7.11 99.48 0.71 -0.93 16 46 H -0.28 -1.51 6.75 99.48 0.67 -0.84 16 47 H 0.15 -0.05 4.89 -2.91 -0.01 -0.06 16 48 H 0.16 -0.60 6.29 -2.91 -0.02 -0.62 16 Total: 0.00 -33.23 406.98 -2.10 -35.33 By element: Atomic # 1 Polarization: -15.48 SS G_CDS: -0.41 Total: -15.90 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 5.91 Total: 8.69 kcal Atomic # 7 Polarization: -3.73 SS G_CDS: -6.34 Total: -10.06 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -3.33 Total: -21.06 kcal Atomic # 14 Polarization: 0.92 SS G_CDS: 2.07 Total: 3.00 kcal Total: -33.23 -2.10 -35.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_4974312.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.818 kcal (2) G-P(sol) polarization free energy of solvation -33.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds