Wall clock time and date at job start Sun Mar 7 2021 04:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35969 * 116.99450 * 2 1 4 4 C 1.39447 * 120.11668 * 179.97438 * 3 2 1 5 5 O 1.34778 * 133.24827 * 0.02648 * 4 3 2 6 6 C 1.34916 * 110.84677 * 179.97438 * 5 4 3 7 7 C 1.46998 * 125.14198 * 180.02562 * 6 5 4 8 8 O 1.21651 * 119.99760 * 179.97438 * 7 6 5 9 9 N 1.34778 * 119.99822 * 359.97438 * 7 6 5 10 10 C 1.46497 * 119.99904 * 180.02562 * 9 7 6 11 11 H 1.09005 * 112.85071 * 25.33090 * 10 9 7 12 12 C 1.53776 * 113.61626 * 156.52953 * 10 9 7 13 13 C 1.53778 * 87.08232 * 139.97780 * 12 10 9 14 14 H 1.08999 * 113.61203 * 89.20463 * 13 12 10 15 15 C 1.50703 * 113.61345 * 220.01879 * 13 12 10 16 16 N 1.30269 * 126.28322 * 60.03009 * 15 13 12 17 17 N 1.28665 * 109.38163 * 179.97438 * 16 15 13 18 18 C 1.30277 * 109.38213 * 0.02562 * 17 16 15 19 19 C 1.50698 * 126.28234 * 179.97438 * 18 17 16 20 20 O 1.34361 * 126.27792 * 239.71121 * 15 13 12 21 21 C 1.53782 * 113.61171 * 254.13989 * 10 9 7 22 22 C 1.35810 * 109.71988 * 0.02562 * 6 5 4 23 23 C 1.40615 * 119.13554 * 180.02562 * 4 3 2 24 24 C 1.39777 * 120.11756 * 0.02562 * 23 4 3 25 25 C 1.50705 * 120.09176 * 180.02562 * 24 23 4 26 26 O 1.42900 * 109.46945 * 284.98126 * 25 24 23 27 27 Si 1.86297 * 109.46830 * 164.98073 * 25 24 23 28 28 C 1.36624 * 119.81482 * 0.02562 * 24 23 4 29 29 C 1.38252 * 120.12397 * 0.02562 * 3 2 1 30 30 H 1.09004 * 109.47215 * 60.00535 * 1 2 3 31 31 H 1.09007 * 109.46921 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47410 * 299.99855 * 1 2 3 33 33 H 0.96999 * 119.99967 * 0.02562 * 9 7 6 34 34 H 1.08994 * 113.61672 * 254.53053 * 12 10 9 35 35 H 1.09003 * 113.61362 * 25.43046 * 12 10 9 36 36 H 1.09007 * 109.46636 * 89.97355 * 19 18 17 37 37 H 1.09001 * 109.47000 * 209.96969 * 19 18 17 38 38 H 1.08994 * 109.47295 * 329.97525 * 19 18 17 39 39 H 1.08998 * 113.61524 * 334.56200 * 21 10 9 40 40 H 1.09000 * 113.61623 * 105.46978 * 21 10 9 41 41 H 1.08004 * 126.95417 * 179.97438 * 22 6 5 42 42 H 1.08998 * 109.46731 * 44.97699 * 25 24 23 43 43 H 0.96706 * 113.99885 * 180.02562 * 26 25 24 44 44 H 1.48492 * 110.00238 * 60.00120 * 27 25 24 45 45 H 1.48506 * 109.99536 * 181.32081 * 27 25 24 46 46 H 1.08002 * 119.75764 * 179.97438 * 28 24 23 47 47 H 1.08003 * 119.66381 * 0.24809 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4386 1.2875 0.0005 5 8 4.4141 0.3575 0.0007 6 6 5.6316 0.9389 0.0007 7 6 6.9131 0.2187 0.0003 8 8 7.9595 0.8392 -0.0001 9 7 6.9287 -1.1290 0.0004 10 6 8.2058 -1.8467 0.0005 11 1 9.0196 -1.2625 0.4303 12 6 8.1097 -3.2751 0.5617 13 6 9.0731 -3.6966 -0.5603 14 1 10.1248 -3.6201 -0.2843 15 6 8.7273 -5.0231 -1.1863 16 7 7.6145 -5.3220 -1.7940 17 7 7.6657 -6.5407 -2.2035 18 6 8.8127 -7.0609 -1.8704 19 6 9.2725 -8.4663 -2.1610 20 8 9.5126 -6.1126 -1.2253 21 6 8.5543 -2.4842 -1.3549 22 6 5.4943 2.2900 0.0012 23 6 4.0553 2.5512 0.0011 24 6 3.2763 3.7118 0.0016 25 6 3.9379 5.0659 0.0016 26 8 4.4604 5.3407 1.3029 27 14 2.6860 6.3685 -0.4528 28 6 1.9135 3.6152 0.0021 29 6 1.2956 2.3726 0.0005 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 6.0944 -1.6237 0.0003 34 1 8.5308 -3.3808 1.5615 35 1 7.1159 -3.7137 0.4715 36 1 9.7851 -8.4893 -3.1228 37 1 9.9555 -8.7945 -1.3774 38 1 8.4098 -9.1316 -2.1932 39 1 7.6823 -2.7062 -1.9700 40 1 9.3339 -1.9523 -1.9001 41 1 6.2873 3.0232 0.0017 42 1 4.7502 5.0733 -0.7251 43 1 4.9010 6.1983 1.3768 44 1 1.5733 6.3686 0.5304 45 1 3.3333 7.7047 -0.4875 46 1 1.3125 4.5125 0.0030 47 1 0.2173 2.3120 0.0050 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_6672420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:08:46 Heat of formation + Delta-G solvation = 3.137565 kcal Electronic energy + Delta-G solvation = -34529.734417 eV Core-core repulsion = 29649.648941 eV Total energy + Delta-G solvation = -4880.085476 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.140 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.33630 -43.77719 -41.36763 -40.61763 -39.54616 -39.01278 -37.28225 -37.21790 -35.13958 -33.68648 -33.63624 -32.02559 -31.11859 -29.69328 -28.59224 -27.07725 -26.94473 -26.24397 -25.16593 -24.03357 -23.72172 -23.23016 -21.93511 -21.72605 -21.03040 -19.69602 -18.92196 -18.68991 -18.58665 -18.51630 -18.37802 -17.76235 -17.49814 -17.06072 -16.63435 -16.47080 -16.35427 -16.13456 -15.85210 -15.62840 -15.51213 -15.07800 -14.64378 -14.54504 -14.28589 -14.22251 -14.00912 -13.94605 -13.77587 -13.68063 -13.61575 -13.46403 -13.38929 -13.24394 -12.99118 -12.78547 -12.54675 -12.40274 -12.38721 -12.07353 -11.99335 -11.91673 -11.74019 -11.59084 -11.03869 -10.51417 -10.48775 -10.35850 -9.85564 -9.02826 -4.90239 -0.69785 0.04433 0.07069 0.58680 1.11481 1.20938 1.23496 1.29381 1.61669 1.84777 1.89199 1.93650 2.11610 2.34132 2.74694 3.10267 3.19147 3.31127 3.36102 3.47569 3.53817 3.60178 3.69503 3.69926 3.79996 3.92248 3.96404 3.99632 4.12695 4.28964 4.30766 4.34959 4.39122 4.40427 4.42657 4.45150 4.52196 4.59119 4.61903 4.68236 4.74676 4.77932 4.81078 4.84182 4.84774 4.94659 5.01520 5.01742 5.20081 5.26573 5.36664 5.56588 6.14957 6.25960 6.58516 6.75943 7.19116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.333 6.333 3 C 0.136 3.864 4 C 0.021 3.979 5 O -0.182 6.182 6 C -0.036 4.036 7 C 0.608 3.392 8 O -0.538 6.538 9 N -0.695 5.695 10 C 0.126 3.874 11 H 0.133 0.867 12 C -0.120 4.120 13 C -0.016 4.016 14 H 0.156 0.844 15 C 0.176 3.824 16 N -0.315 5.315 17 N -0.333 5.333 18 C 0.168 3.832 19 C -0.060 4.060 20 O -0.230 6.230 21 C -0.134 4.134 22 C -0.109 4.109 23 C -0.098 4.098 24 C -0.064 4.064 25 C -0.092 4.092 26 O -0.557 6.557 27 Si 0.776 3.224 28 C -0.090 4.090 29 C -0.166 4.166 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.072 0.928 33 H 0.416 0.584 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.178 0.822 42 H 0.087 0.913 43 H 0.395 0.605 44 H -0.281 1.281 45 H -0.286 1.286 46 H 0.161 0.839 47 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.384 -1.115 -0.979 2.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.247 6.247 3 C 0.090 3.910 4 C -0.027 4.027 5 O -0.084 6.084 6 C -0.086 4.086 7 C 0.393 3.607 8 O -0.417 6.417 9 N -0.345 5.345 10 C 0.022 3.978 11 H 0.150 0.850 12 C -0.158 4.158 13 C -0.036 4.036 14 H 0.174 0.826 15 C -0.036 4.036 16 N -0.160 5.160 17 N -0.179 5.179 18 C -0.043 4.043 19 C -0.118 4.118 20 O -0.110 6.110 21 C -0.173 4.173 22 C -0.129 4.129 23 C -0.099 4.099 24 C -0.065 4.065 25 C -0.199 4.199 26 O -0.367 6.367 27 Si 0.680 3.320 28 C -0.108 4.108 29 C -0.184 4.184 30 H 0.096 0.904 31 H 0.134 0.866 32 H 0.091 0.909 33 H 0.253 0.747 34 H 0.131 0.869 35 H 0.110 0.890 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.195 0.805 42 H 0.105 0.895 43 H 0.245 0.755 44 H -0.208 1.208 45 H -0.213 1.213 46 H 0.178 0.822 47 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.454 -0.978 -1.124 2.871 hybrid contribution 1.464 0.031 1.203 1.895 sum -0.990 -0.947 0.079 1.372 Atomic orbital electron populations 1.23490 0.75344 1.06014 1.03169 1.86150 1.24316 1.25753 1.88453 1.17971 0.86203 0.86786 0.99994 1.19185 0.88242 0.87129 1.08156 1.84016 1.12807 1.35056 1.76499 1.22011 0.84086 0.92806 1.09669 1.16619 0.84931 0.82706 0.76403 1.90883 1.31068 1.68115 1.51650 1.45837 1.10945 1.04972 1.72722 1.22585 0.86550 0.91767 0.96884 0.84956 1.23444 1.00078 0.93224 0.99092 1.21261 1.03747 0.81544 0.97070 0.82619 1.28230 0.85849 0.90985 0.98534 1.74243 1.20982 1.07226 1.13532 1.74374 1.19447 1.02358 1.21730 1.29007 0.87241 0.95909 0.92112 1.20710 1.04781 0.80582 1.05679 1.84810 1.44809 1.20989 1.60361 1.23612 1.02574 0.93588 0.97518 1.22857 0.95106 0.94468 1.00519 1.19608 0.92693 0.92663 1.04966 1.18661 0.93063 0.92307 1.02453 1.25136 1.06169 1.00625 0.87966 1.86572 1.77318 1.42522 1.30291 0.93950 0.76647 0.73831 0.87596 1.20835 0.93053 0.98761 0.98118 1.21343 1.01824 0.89501 1.05775 0.90383 0.86623 0.90902 0.74664 0.86898 0.88961 0.86476 0.86692 0.86546 0.89324 0.88556 0.80495 0.89503 0.75491 1.20827 1.21260 0.82195 0.80260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.06 9.81 113.37 1.11 1.05 16 2 O -0.33 -1.63 10.50 -93.20 -0.98 -2.60 16 3 C 0.14 0.77 6.70 22.56 0.15 0.92 16 4 C 0.02 0.20 7.35 23.14 0.17 0.37 16 5 O -0.18 -1.82 10.28 -13.31 -0.14 -1.96 16 6 C -0.04 -0.32 7.07 24.00 0.17 -0.15 16 7 C 0.61 4.65 7.80 86.54 0.67 5.33 16 8 O -0.54 -6.60 16.44 -4.19 -0.07 -6.67 16 9 N -0.70 -1.46 5.36 -443.71 -2.38 -3.83 16 10 C 0.13 -0.20 4.21 45.52 0.19 -0.01 16 11 H 0.13 -0.25 7.50 -2.38 -0.02 -0.26 16 12 C -0.12 0.49 7.38 31.12 0.23 0.72 16 13 C -0.02 0.05 4.29 -10.95 -0.05 0.00 16 14 H 0.16 -1.27 8.14 -2.39 -0.02 -1.29 16 15 C 0.18 0.82 7.54 88.34 0.67 1.49 16 16 N -0.31 -3.31 11.84 -165.51 -1.96 -5.27 16 17 N -0.33 -3.62 12.22 -165.49 -2.02 -5.64 16 18 C 0.17 0.69 8.48 88.34 0.75 1.44 16 19 C -0.06 0.39 10.51 71.24 0.75 1.14 16 20 O -0.23 -1.02 10.87 -3.69 -0.04 -1.07 16 21 C -0.13 0.15 7.43 31.18 0.23 0.38 16 22 C -0.11 -0.92 10.68 23.79 0.25 -0.67 16 23 C -0.10 -0.82 6.16 -20.24 -0.12 -0.94 16 24 C -0.06 -0.28 5.30 -19.87 -0.11 -0.39 16 25 C -0.09 -0.07 2.70 71.24 0.19 0.12 16 26 O -0.56 -2.01 12.86 -148.98 -1.92 -3.92 16 27 Si 0.78 -2.45 30.20 68.60 2.07 -0.38 16 28 C -0.09 -0.05 8.62 22.02 0.19 0.14 16 29 C -0.17 0.01 9.03 22.40 0.20 0.21 16 30 H 0.08 -0.64 7.66 -2.39 -0.02 -0.65 16 31 H 0.12 -0.83 8.14 -2.38 -0.02 -0.85 16 32 H 0.07 -0.54 7.65 -2.39 -0.02 -0.56 16 33 H 0.42 0.17 8.43 -92.71 -0.78 -0.61 16 34 H 0.11 -0.86 8.14 -2.39 -0.02 -0.88 16 35 H 0.09 -0.15 8.06 -2.39 -0.02 -0.17 16 36 H 0.12 -1.11 8.14 -2.38 -0.02 -1.12 16 37 H 0.11 -1.20 8.14 -2.39 -0.02 -1.22 16 38 H 0.12 -0.92 8.14 -2.39 -0.02 -0.94 16 39 H 0.09 0.24 7.79 -2.39 -0.02 0.22 16 40 H 0.10 -0.23 8.14 -2.39 -0.02 -0.25 16 41 H 0.18 1.10 8.06 -2.91 -0.02 1.07 16 42 H 0.09 -0.16 7.96 -2.39 -0.02 -0.18 16 43 H 0.39 -1.83 8.74 -74.05 -0.65 -2.47 16 44 H -0.28 -0.44 6.75 99.48 0.67 0.23 16 45 H -0.29 -0.35 7.11 99.48 0.71 0.36 16 46 H 0.16 -0.65 4.85 -2.91 -0.01 -0.67 16 47 H 0.18 -1.31 6.26 -2.91 -0.02 -1.32 16 Total: 0.00 -29.63 405.44 -2.13 -31.76 By element: Atomic # 1 Polarization: -11.21 SS G_CDS: -0.35 Total: -11.57 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 5.66 Total: 11.14 kcal Atomic # 7 Polarization: -8.38 SS G_CDS: -6.36 Total: -14.74 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -3.14 Total: -16.22 kcal Atomic # 14 Polarization: -2.45 SS G_CDS: 2.07 Total: -0.38 kcal Total: -29.63 -2.13 -31.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_6672420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.897 kcal (2) G-P(sol) polarization free energy of solvation -29.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds