Wall clock time and date at job start Sun Mar 7 2021 04:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30269 * 126.28270 * 2 1 4 4 N 1.28669 * 109.38036 * 179.73315 * 3 2 1 5 5 C 1.30274 * 109.38336 * 0.44245 * 4 3 2 6 6 C 1.50690 * 126.28242 * 179.83056 * 5 4 3 7 7 H 1.09000 * 112.90879 * 168.43997 * 6 5 4 8 8 C 1.53786 * 113.61518 * 299.68649 * 6 5 4 9 9 C 1.53781 * 87.17350 * 140.02616 * 8 6 5 10 10 H 1.09003 * 113.61462 * 89.16045 * 9 8 6 11 11 N 1.46493 * 113.61552 * 219.97837 * 9 8 6 12 12 C 1.34781 * 120.00279 * 205.00255 * 11 9 8 13 13 O 1.21706 * 119.99718 * 359.97438 * 12 11 9 14 14 C 1.46579 * 119.99887 * 180.02562 * 12 11 9 15 15 C 1.36651 * 125.45307 * 179.97438 * 14 12 11 16 16 C 1.37474 * 113.29448 * 179.97438 * 15 14 12 17 17 C 1.50702 * 122.44939 * 179.97438 * 16 15 14 18 18 C 1.33820 * 115.10220 * 359.97438 * 16 15 14 19 19 C 1.50697 * 124.52158 * 180.02562 * 18 16 15 20 20 O 1.42899 * 109.47370 * 30.00052 * 19 18 16 21 21 Si 1.86299 * 109.46879 * 149.99957 * 19 18 16 22 22 S 1.70613 * 110.95234 * 359.72368 * 18 16 15 23 23 C 1.53781 * 87.08070 * 334.52830 * 9 8 6 24 24 O 1.34360 * 107.43096 * 359.56489 * 5 4 3 25 25 H 1.09004 * 109.47253 * 269.99929 * 1 2 3 26 26 H 1.08996 * 109.47204 * 30.00121 * 1 2 3 27 27 H 1.09006 * 109.46676 * 150.00012 * 1 2 3 28 28 H 1.09002 * 113.61357 * 25.43533 * 8 6 5 29 29 H 1.09002 * 113.61608 * 254.61695 * 8 6 5 30 30 H 0.97006 * 120.00380 * 24.99977 * 11 9 8 31 31 H 1.08002 * 123.35394 * 0.02562 * 15 14 12 32 32 H 1.09007 * 109.46899 * 90.02220 * 17 16 15 33 33 H 1.09001 * 109.47320 * 210.02289 * 17 16 15 34 34 H 1.09004 * 109.47069 * 330.03005 * 17 16 15 35 35 H 1.09003 * 109.47087 * 269.99781 * 19 18 16 36 36 H 0.96700 * 113.99963 * 59.99410 * 20 19 18 37 37 H 1.48510 * 109.99610 * 179.97438 * 21 19 18 38 38 H 1.48495 * 110.00065 * 301.31587 * 21 19 18 39 39 H 1.09005 * 113.61471 * 139.98321 * 23 9 8 40 40 H 1.09003 * 113.61469 * 270.88099 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6760 0.0057 5 6 3.5654 -0.6255 0.0000 6 6 4.8176 -1.4638 0.0000 7 1 4.6224 -2.5181 0.1959 8 6 5.7215 -1.2211 -1.2203 9 6 6.9173 -1.3188 -0.2584 10 1 7.2960 -2.3333 -0.1341 11 7 7.9767 -0.3465 -0.5385 12 6 9.2444 -0.6031 -0.1594 13 8 9.5089 -1.6424 0.4160 14 6 10.3043 0.3700 -0.4393 15 6 11.6216 0.2251 -0.1059 16 6 12.3998 1.2916 -0.4891 17 6 13.8822 1.3476 -0.2236 18 6 11.7448 2.2765 -1.1150 19 6 12.3878 3.5404 -1.6250 20 8 13.7437 3.2722 -1.9878 21 14 11.4553 4.1531 -3.1169 22 16 10.0861 1.9065 -1.2659 23 6 5.9553 -0.8773 0.8572 24 8 2.3021 -1.0831 0.0000 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5138 27 1 -0.3633 -0.8901 -0.5139 28 1 5.5985 -0.2336 -1.6652 29 1 5.6864 -2.0243 -1.9563 30 1 7.7659 0.4820 -0.9969 31 1 12.0125 -0.6414 0.4067 32 1 14.4186 0.9061 -1.0636 33 1 14.1904 2.3859 -0.1009 34 1 14.1097 0.7911 0.6857 35 1 12.3641 4.3007 -0.8442 36 1 13.8408 2.6035 -2.6794 37 1 12.0792 5.3997 -3.6290 38 1 11.4530 3.1131 -4.1768 39 1 6.1083 -1.4038 1.7993 40 1 5.8963 0.2041 0.9803 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14942244_6739946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:08:51 Heat of formation + Delta-G solvation = 31.872709 kcal Electronic energy + Delta-G solvation = -25527.613927 eV Core-core repulsion = 21631.743412 eV Total energy + Delta-G solvation = -3895.870515 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.21380 -41.31245 -40.19748 -39.30915 -37.43539 -37.13101 -34.94985 -33.65105 -32.11510 -30.27381 -29.75188 -27.37310 -27.02266 -26.03731 -24.59804 -23.66491 -23.18013 -21.77459 -21.08007 -20.14635 -19.32010 -18.60946 -18.39513 -17.80343 -17.33523 -17.22543 -16.58382 -16.49795 -16.16081 -15.98623 -15.53438 -15.45288 -14.81321 -14.62382 -14.45734 -14.40684 -13.92281 -13.87236 -13.80043 -13.75259 -13.54256 -13.33361 -13.13011 -13.01636 -12.83357 -12.74918 -12.44103 -12.37238 -12.24777 -12.02464 -11.85312 -11.83598 -11.09869 -10.91554 -10.41857 -10.21565 -9.68145 -9.41720 -5.20920 -0.62069 0.12157 0.29934 0.71253 1.03827 1.19071 1.33062 1.37825 1.47548 1.81247 2.01012 2.15411 2.73826 3.09243 3.11277 3.23827 3.41818 3.51483 3.55141 3.60029 3.72844 3.97131 4.10854 4.20788 4.26304 4.27689 4.33819 4.37394 4.43192 4.50119 4.51436 4.57191 4.60571 4.64941 4.75867 4.77365 4.78467 4.85515 5.00267 5.02624 5.35212 5.38376 5.43806 6.18120 6.32603 7.06934 7.32505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.163 3.837 3 N -0.288 5.288 4 N -0.281 5.281 5 C 0.174 3.826 6 C -0.022 4.022 7 H 0.129 0.871 8 C -0.131 4.131 9 C 0.130 3.870 10 H 0.128 0.872 11 N -0.715 5.715 12 C 0.596 3.404 13 O -0.524 6.524 14 C -0.264 4.264 15 C -0.046 4.046 16 C -0.096 4.096 17 C -0.096 4.096 18 C -0.235 4.235 19 C -0.032 4.032 20 O -0.517 6.517 21 Si 0.662 3.338 22 S 0.204 5.796 23 C -0.135 4.135 24 O -0.225 6.225 25 H 0.101 0.899 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.402 0.598 31 H 0.155 0.845 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.129 0.871 36 H 0.378 0.622 37 H -0.237 1.237 38 H -0.247 1.247 39 H 0.088 0.912 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.799 -0.269 -1.890 4.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.048 4.048 3 N -0.135 5.135 4 N -0.128 5.128 5 C -0.037 4.037 6 C -0.042 4.042 7 H 0.147 0.853 8 C -0.170 4.170 9 C 0.025 3.975 10 H 0.146 0.854 11 N -0.366 5.366 12 C 0.383 3.617 13 O -0.402 6.402 14 C -0.384 4.384 15 C -0.080 4.080 16 C -0.109 4.109 17 C -0.154 4.154 18 C -0.355 4.355 19 C -0.144 4.144 20 O -0.324 6.324 21 Si 0.560 3.440 22 S 0.473 5.527 23 C -0.174 4.174 24 O -0.104 6.104 25 H 0.119 0.881 26 H 0.127 0.873 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.110 0.890 30 H 0.237 0.763 31 H 0.172 0.828 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.147 0.853 36 H 0.227 0.773 37 H -0.161 1.161 38 H -0.170 1.170 39 H 0.107 0.893 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.367 1.628 -2.535 5.305 hybrid contribution 1.490 -2.240 0.214 2.699 sum -2.876 -0.612 -2.322 3.747 Atomic orbital electron populations 1.20405 0.80000 1.05928 1.05484 1.28099 0.97948 0.79513 0.99209 1.74443 0.95940 1.25498 1.17622 1.74316 1.12384 1.08969 1.17089 1.27664 0.84668 0.91612 0.99772 1.21029 0.84084 0.98570 1.00513 0.85347 1.23510 0.92749 1.04618 0.96095 1.22390 0.85100 0.94824 0.95204 0.85444 1.45765 1.07181 1.22771 1.60921 1.16965 0.81441 0.85171 0.78163 1.90858 1.82278 1.25735 1.41311 1.24578 0.98462 1.01007 1.14334 1.20715 0.90701 0.98995 0.97555 1.18712 0.98665 0.93390 1.00156 1.20638 0.89101 1.04009 1.01684 1.24439 0.99460 1.02911 1.08659 1.24428 0.86765 0.95043 1.08163 1.86640 1.23004 1.63292 1.59490 0.95449 0.87993 0.82140 0.78423 1.82735 1.04534 1.11927 1.53503 1.23688 0.91724 1.03425 0.98597 1.84790 1.17565 1.38462 1.69629 0.88107 0.87331 0.88744 0.88144 0.88969 0.76267 0.82761 0.91255 0.89701 0.91786 0.85327 0.77329 1.16065 1.17028 0.89305 0.87697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.19 10.51 36.00 0.38 0.57 16 2 C 0.16 0.23 8.48 -12.94 -0.11 0.12 16 3 N -0.29 -1.18 12.22 32.55 0.40 -0.78 16 4 N -0.28 -1.05 11.83 32.55 0.39 -0.66 16 5 C 0.17 0.26 7.54 -12.95 -0.10 0.16 16 6 C -0.02 0.04 4.30 -90.82 -0.39 -0.35 16 7 H 0.13 -0.46 8.14 -51.93 -0.42 -0.89 16 8 C -0.13 0.35 7.37 -25.92 -0.19 0.16 16 9 C 0.13 -0.19 4.24 -67.12 -0.28 -0.48 16 10 H 0.13 -0.12 7.46 -51.93 -0.39 -0.50 16 11 N -0.72 0.44 5.35 -54.35 -0.29 0.15 16 12 C 0.60 1.32 7.78 -12.89 -0.10 1.22 16 13 O -0.52 -2.93 16.44 5.18 0.09 -2.85 16 14 C -0.26 -0.32 6.45 -36.79 -0.24 -0.56 16 15 C -0.05 -0.07 9.80 -40.43 -0.40 -0.46 16 16 C -0.10 -0.05 5.75 -106.45 -0.61 -0.66 16 17 C -0.10 0.04 8.67 36.01 0.31 0.35 16 18 C -0.24 0.09 5.54 -35.86 -0.20 -0.11 16 19 C -0.03 0.04 2.76 36.00 0.10 0.14 16 20 O -0.52 0.26 9.86 -35.23 -0.35 -0.09 16 21 Si 0.66 -1.07 31.30 -169.99 -5.32 -6.39 16 22 S 0.20 -0.26 19.78 -107.50 -2.13 -2.39 16 23 C -0.14 0.18 7.43 -25.78 -0.19 -0.01 16 24 O -0.23 -0.40 10.87 5.38 0.06 -0.34 16 25 H 0.10 -0.45 8.14 -51.93 -0.42 -0.87 16 26 H 0.11 -0.44 8.14 -51.93 -0.42 -0.86 16 27 H 0.09 -0.45 8.14 -51.93 -0.42 -0.87 16 28 H 0.10 -0.23 8.07 -51.93 -0.42 -0.64 16 29 H 0.09 -0.34 8.14 -51.93 -0.42 -0.77 16 30 H 0.40 -0.97 7.84 -40.82 -0.32 -1.29 16 31 H 0.15 0.22 8.06 -52.49 -0.42 -0.21 16 32 H 0.07 -0.08 8.14 -51.92 -0.42 -0.50 16 33 H 0.08 0.01 6.42 -51.93 -0.33 -0.32 16 34 H 0.06 -0.04 8.13 -51.93 -0.42 -0.46 16 35 H 0.13 -0.26 7.96 -51.93 -0.41 -0.68 16 36 H 0.38 -1.08 8.66 45.56 0.39 -0.69 16 37 H -0.24 -0.28 7.11 56.52 0.40 0.12 16 38 H -0.25 -0.13 7.11 56.52 0.40 0.27 16 39 H 0.09 -0.14 8.14 -51.93 -0.42 -0.56 16 40 H 0.10 -0.03 7.78 -51.93 -0.40 -0.43 16 LS Contribution 355.88 15.07 5.36 5.36 Total: 0.00 -9.35 355.88 -8.70 -18.05 By element: Atomic # 1 Polarization: -5.26 SS G_CDS: -4.88 Total: -10.15 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -2.02 Total: 0.09 kcal Atomic # 7 Polarization: -1.79 SS G_CDS: 0.49 Total: -1.30 kcal Atomic # 8 Polarization: -3.08 SS G_CDS: -0.20 Total: -3.28 kcal Atomic # 14 Polarization: -1.07 SS G_CDS: -5.32 Total: -6.39 kcal Atomic # 16 Polarization: -0.26 SS G_CDS: -2.13 Total: -2.39 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -9.35 -8.70 -18.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_6739946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.923 kcal (2) G-P(sol) polarization free energy of solvation -9.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds