Wall clock time and date at job start Sun Mar 7 2021 04:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30281 * 126.28305 * 2 1 4 4 N 1.28661 * 109.37958 * 179.97438 * 3 2 1 5 5 C 1.30270 * 109.38459 * 359.97438 * 4 3 2 6 6 C 1.50704 * 126.28349 * 180.02562 * 5 4 3 7 7 H 1.08999 * 112.85055 * 191.22332 * 6 5 4 8 8 C 1.53785 * 113.61400 * 322.52412 * 6 5 4 9 9 C 1.53781 * 87.07966 * 139.98426 * 8 6 5 10 10 H 1.08996 * 113.61904 * 89.11610 * 9 8 6 11 11 N 1.46500 * 113.61411 * 220.02235 * 9 8 6 12 12 C 1.34775 * 120.00072 * 252.49871 * 11 9 8 13 13 O 1.21551 * 120.00090 * 359.97438 * 12 11 9 14 14 C 1.47846 * 120.00323 * 179.97438 * 12 11 9 15 15 C 1.39556 * 120.14094 * 353.74093 * 14 12 11 16 16 C 1.37983 * 119.84987 * 179.74313 * 15 14 12 17 17 C 1.50701 * 119.92541 * 180.27295 * 16 15 14 18 18 O 1.42905 * 109.46841 * 105.26604 * 17 16 15 19 19 Si 1.86301 * 109.47613 * 345.26137 * 17 16 15 20 20 C 1.38340 * 120.14634 * 0.54136 * 16 15 14 21 21 C 1.50698 * 119.85547 * 179.71840 * 20 16 15 22 22 C 1.38380 * 120.28729 * 359.73249 * 20 16 15 23 23 C 1.37934 * 120.15112 * 359.97438 * 22 20 16 24 24 C 1.50698 * 120.07701 * 180.02562 * 23 22 20 25 25 C 1.53775 * 113.61550 * 60.02184 * 6 5 4 26 26 O 1.34363 * 126.28295 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47327 * 90.03021 * 1 2 3 28 28 H 1.09005 * 109.47090 * 210.02535 * 1 2 3 29 29 H 1.09001 * 109.47576 * 330.02733 * 1 2 3 30 30 H 1.08993 * 113.61370 * 254.53186 * 8 6 5 31 31 H 1.09004 * 113.61169 * 25.43478 * 8 6 5 32 32 H 0.96997 * 120.00257 * 72.49315 * 11 9 8 33 33 H 1.08004 * 120.07660 * 0.02562 * 15 14 12 34 34 H 1.09003 * 109.46904 * 225.25838 * 17 16 15 35 35 H 0.96704 * 113.99125 * 299.99521 * 18 17 16 36 36 H 1.48490 * 110.00111 * 179.97438 * 19 17 16 37 37 H 1.48497 * 109.99752 * 301.31941 * 19 17 16 38 38 H 1.09001 * 109.46857 * 270.01687 * 21 20 16 39 39 H 1.09006 * 109.47101 * 30.01623 * 21 20 16 40 40 H 1.08998 * 109.46807 * 150.01660 * 21 20 16 41 41 H 1.08008 * 119.92488 * 180.02562 * 22 20 16 42 42 H 1.08995 * 109.47086 * 263.38654 * 24 23 22 43 43 H 1.09004 * 109.47042 * 23.38576 * 24 23 22 44 44 H 1.08995 * 109.47219 * 143.38455 * 24 23 22 45 45 H 1.09001 * 113.61986 * 334.57230 * 25 6 5 46 46 H 1.09008 * 113.61626 * 105.39030 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5089 0.6761 0.0005 5 6 3.5653 -0.6254 0.0015 6 6 4.8176 -1.4638 0.0029 7 1 4.6213 -2.5181 -0.1921 8 6 5.9522 -0.8778 -0.8541 9 6 6.9154 -1.3180 0.2609 10 1 7.2939 -2.3325 0.1358 11 7 7.9743 -0.3447 0.5397 12 6 9.2418 -0.6005 0.1596 13 8 9.5065 -1.6389 -0.4141 14 6 10.3104 0.3819 0.4404 15 6 9.9917 1.6289 0.9800 16 6 10.9943 2.5392 1.2446 17 6 10.6527 3.8839 1.8330 18 8 11.0181 3.9061 3.2144 19 14 8.8217 4.1862 1.6700 20 6 12.3118 2.2224 0.9659 21 6 13.4009 3.2239 1.2516 22 6 12.6338 0.9898 0.4255 23 6 11.6418 0.0684 0.1618 24 6 11.9945 -1.2736 -0.4262 25 6 5.7203 -1.2207 1.2238 26 8 2.3020 -1.0831 0.0005 27 1 -0.3634 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5143 29 1 -0.3634 0.8902 0.5134 30 1 6.1047 -1.4047 -1.7959 31 1 5.8922 0.2035 -0.9776 32 1 7.7633 0.4838 0.9978 33 1 8.9631 1.8791 1.1942 34 1 11.1985 4.6628 1.3004 35 1 10.5697 3.2377 3.7505 36 1 8.4719 5.5089 2.2471 37 1 8.4237 4.1341 0.2403 38 1 13.5560 3.8521 0.3745 39 1 13.1091 3.8466 2.0975 40 1 14.3252 2.6976 1.4897 41 1 13.6644 0.7484 0.2106 42 1 11.8586 -1.2437 -1.5072 43 1 13.0339 -1.5088 -0.1970 44 1 11.3463 -2.0389 0.0005 45 1 5.5970 -0.2331 1.6684 46 1 5.6847 -2.0237 1.9601 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_9599494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:09:03 Heat of formation + Delta-G solvation = 20.390547 kcal Electronic energy + Delta-G solvation = -29658.993871 eV Core-core repulsion = 25517.935586 eV Total energy + Delta-G solvation = -4141.058285 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.30116 -41.77630 -40.60491 -39.34423 -37.59079 -37.24717 -35.22485 -34.37015 -33.77693 -32.98827 -29.84758 -29.20450 -28.53838 -26.85589 -26.70970 -25.56978 -24.05567 -23.64669 -23.41340 -22.13409 -21.34325 -20.56862 -18.96682 -18.59183 -18.47280 -17.54715 -17.52379 -16.84815 -16.55227 -16.34270 -16.14068 -16.03226 -15.64198 -15.49176 -15.28810 -14.79671 -14.66925 -14.41592 -14.26850 -14.15406 -13.91382 -13.67014 -13.60908 -13.58299 -13.42426 -13.34030 -13.05675 -12.95961 -12.86257 -12.62556 -12.58458 -12.51176 -12.29577 -12.18433 -11.89770 -11.85784 -11.83628 -10.70481 -10.46571 -10.43989 -10.15626 -9.89226 -9.60200 -5.10426 -0.25262 0.08157 0.17448 1.20989 1.25827 1.26747 1.58258 1.74322 1.93527 2.10348 2.64528 2.79752 3.22956 3.40116 3.45998 3.48977 3.54081 3.63803 3.70811 3.72600 3.76494 3.82668 4.04492 4.15716 4.23154 4.32155 4.44306 4.46329 4.51286 4.53201 4.54707 4.57862 4.66992 4.68424 4.69642 4.71038 4.76228 4.81467 4.85609 4.91152 4.92632 5.02375 5.03982 5.11558 5.16491 5.28036 5.48277 5.50347 5.54476 5.80833 6.46326 6.76663 7.14840 7.22379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.167 3.833 3 N -0.331 5.331 4 N -0.313 5.313 5 C 0.177 3.823 6 C -0.019 4.019 7 H 0.150 0.850 8 C -0.137 4.137 9 C 0.131 3.869 10 H 0.125 0.875 11 N -0.706 5.706 12 C 0.561 3.439 13 O -0.557 6.557 14 C -0.159 4.159 15 C -0.065 4.065 16 C -0.140 4.140 17 C -0.061 4.061 18 O -0.548 6.548 19 Si 0.753 3.247 20 C -0.032 4.032 21 C -0.127 4.127 22 C -0.137 4.137 23 C -0.024 4.024 24 C -0.118 4.118 25 C -0.118 4.118 26 O -0.231 6.231 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.412 0.588 33 H 0.149 0.851 34 H 0.111 0.889 35 H 0.396 0.604 36 H -0.295 1.295 37 H -0.288 1.288 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.145 0.855 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.099 0.901 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.179 -3.257 3.171 5.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.044 4.044 3 N -0.178 5.178 4 N -0.158 5.158 5 C -0.035 4.035 6 C -0.040 4.040 7 H 0.168 0.832 8 C -0.176 4.176 9 C 0.026 3.974 10 H 0.143 0.857 11 N -0.358 5.358 12 C 0.351 3.649 13 O -0.438 6.438 14 C -0.162 4.162 15 C -0.083 4.083 16 C -0.141 4.141 17 C -0.172 4.172 18 O -0.356 6.356 19 Si 0.660 3.340 20 C -0.032 4.032 21 C -0.184 4.184 22 C -0.155 4.155 23 C -0.025 4.025 24 C -0.174 4.174 25 C -0.157 4.157 26 O -0.111 6.111 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.250 0.750 33 H 0.166 0.834 34 H 0.128 0.872 35 H 0.246 0.754 36 H -0.223 1.223 37 H -0.214 1.214 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.162 0.838 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.118 0.882 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.901 -1.745 2.245 4.062 hybrid contribution 0.007 -0.413 -0.398 0.574 sum -2.894 -2.159 1.848 4.055 Atomic orbital electron populations 1.20690 0.77069 1.07266 1.06766 1.28950 0.99319 0.78886 0.97230 1.74373 0.96557 1.27043 1.19799 1.74222 1.12656 1.10267 1.18636 1.28277 0.85403 0.91398 0.98419 1.21254 0.82590 0.99067 1.01058 0.83237 1.23602 0.92502 1.02536 0.98992 1.22375 0.85111 0.94582 0.95310 0.85747 1.45797 1.06704 1.23188 1.60079 1.18368 0.82943 0.85701 0.77932 1.90733 1.82399 1.27808 1.42818 1.19693 0.93614 0.95542 1.07338 1.21171 0.99009 0.91954 0.96169 1.20166 0.93354 0.97285 1.03286 1.24974 1.11890 0.95446 0.84862 1.86476 1.71221 1.60814 1.17087 0.94240 0.75339 0.83727 0.80730 1.20218 0.94637 0.94862 0.93476 1.21011 0.96491 0.97887 1.02981 1.21195 1.00099 0.93045 1.01172 1.20233 0.91826 0.96634 0.93838 1.21031 1.02189 0.93393 1.00816 1.23464 0.91151 1.05283 0.95771 1.84813 1.17789 1.38649 1.69888 0.86663 0.86765 0.86543 0.89472 0.89167 0.74986 0.83409 0.87179 0.75431 1.22258 1.21442 0.90265 0.90108 0.90252 0.83755 0.91310 0.90878 0.89897 0.88208 0.87124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.44 10.51 71.23 0.75 1.19 16 2 C 0.17 0.48 8.48 88.34 0.75 1.23 16 3 N -0.33 -3.03 12.22 -165.50 -2.02 -5.05 16 4 N -0.31 -2.58 11.83 -165.50 -1.96 -4.54 16 5 C 0.18 0.52 7.53 88.34 0.67 1.18 16 6 C -0.02 0.09 4.29 -11.01 -0.05 0.04 16 7 H 0.15 -1.32 8.14 -2.39 -0.02 -1.34 16 8 C -0.14 0.38 7.42 31.12 0.23 0.61 16 9 C 0.13 -0.56 4.24 45.52 0.19 -0.36 16 10 H 0.12 -0.39 7.46 -2.39 -0.02 -0.40 16 11 N -0.71 1.90 5.30 -442.91 -2.35 -0.45 16 12 C 0.56 1.91 7.70 86.79 0.67 2.58 16 13 O -0.56 -5.17 12.94 -3.88 -0.05 -5.22 16 14 C -0.16 -0.40 5.87 -20.09 -0.12 -0.51 16 15 C -0.07 0.10 8.13 22.53 0.18 0.28 16 16 C -0.14 0.06 5.26 -19.90 -0.10 -0.04 16 17 C -0.06 0.10 1.88 71.24 0.13 0.23 16 18 O -0.55 1.04 11.92 -148.98 -1.78 -0.73 16 19 Si 0.75 -1.51 29.91 68.60 2.05 0.54 16 20 C -0.03 -0.02 5.89 -19.81 -0.12 -0.14 16 21 C -0.13 0.19 9.31 71.24 0.66 0.86 16 22 C -0.14 -0.19 9.31 22.23 0.21 0.02 16 23 C -0.02 -0.09 5.91 -19.61 -0.12 -0.20 16 24 C -0.12 -0.45 8.73 71.24 0.62 0.17 16 25 C -0.12 0.84 7.38 31.12 0.23 1.07 16 26 O -0.23 -0.76 10.87 -3.66 -0.04 -0.80 16 27 H 0.12 -1.15 8.14 -2.39 -0.02 -1.17 16 28 H 0.11 -1.27 8.14 -2.38 -0.02 -1.29 16 29 H 0.12 -1.02 8.14 -2.39 -0.02 -1.04 16 30 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 31 H 0.09 0.03 7.78 -2.38 -0.02 0.01 16 32 H 0.41 -2.98 6.80 -92.71 -0.63 -3.61 16 33 H 0.15 -1.05 3.51 -2.91 -0.01 -1.06 16 34 H 0.11 -0.06 7.38 -2.39 -0.02 -0.08 16 35 H 0.40 -3.84 8.70 -74.05 -0.64 -4.48 16 36 H -0.29 -1.67 7.11 99.48 0.71 -0.96 16 37 H -0.29 -1.15 7.11 99.48 0.71 -0.44 16 38 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.08 -0.02 6.18 -2.38 -0.01 -0.03 16 40 H 0.08 -0.25 8.08 -2.39 -0.02 -0.27 16 41 H 0.14 -0.28 8.06 -2.91 -0.02 -0.30 16 42 H 0.07 0.35 8.14 -2.39 -0.02 0.34 16 43 H 0.07 0.03 8.04 -2.38 -0.02 0.01 16 44 H 0.08 0.57 5.85 -2.39 -0.01 0.56 16 45 H 0.10 -0.65 8.07 -2.39 -0.02 -0.67 16 46 H 0.11 -1.14 8.14 -2.38 -0.02 -1.16 16 Total: 0.00 -24.35 378.11 -1.54 -25.89 By element: Atomic # 1 Polarization: -17.66 SS G_CDS: -0.19 Total: -17.85 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 4.79 Total: 8.21 kcal Atomic # 7 Polarization: -3.72 SS G_CDS: -6.33 Total: -10.05 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -1.87 Total: -6.75 kcal Atomic # 14 Polarization: -1.51 SS G_CDS: 2.05 Total: 0.54 kcal Total: -24.35 -1.54 -25.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_9599494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.283 kcal (2) G-P(sol) polarization free energy of solvation -24.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds