Wall clock time and date at job start Sun Mar 7 2021 04:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30271 * 126.28267 * 2 1 4 4 N 1.28680 * 109.38231 * 179.72826 * 3 2 1 5 5 C 1.30272 * 109.37518 * 0.44593 * 4 3 2 6 6 C 1.50696 * 126.28014 * 179.82574 * 5 4 3 7 7 H 1.09001 * 112.85438 * 190.88496 * 6 5 4 8 8 C 1.53961 * 113.74303 * 322.09125 * 6 5 4 9 9 C 1.53780 * 87.02176 * 139.94306 * 8 6 5 10 10 H 1.09001 * 113.61613 * 89.22812 * 9 8 6 11 11 N 1.46500 * 113.61521 * 220.05038 * 9 8 6 12 12 C 1.34774 * 119.99678 * 254.13031 * 11 9 8 13 13 O 1.21276 * 120.00377 * 0.02562 * 12 11 9 14 14 C 1.50703 * 119.99806 * 179.97438 * 12 11 9 15 15 N 1.46504 * 109.46890 * 180.02562 * 14 12 11 16 16 C 1.36828 * 125.06367 * 264.97606 * 15 14 12 17 17 C 1.34238 * 109.93760 * 180.02562 * 16 15 14 18 18 C 1.50701 * 126.49927 * 179.97438 * 17 16 15 19 19 O 1.42903 * 109.46878 * 105.02421 * 18 17 16 20 20 Si 1.86303 * 109.47233 * 345.02651 * 18 17 16 21 21 C 1.46487 * 106.99775 * 0.24404 * 17 16 15 22 22 C 1.39593 * 134.03603 * 180.42400 * 21 17 16 23 23 C 1.36661 * 119.76593 * 179.61175 * 22 21 17 24 24 C 1.38784 * 120.52792 * 359.76624 * 23 22 21 25 25 C 1.37787 * 120.66688 * 359.97314 * 24 23 22 26 26 C 1.37683 * 125.05926 * 84.98516 * 15 14 12 27 27 C 1.53781 * 113.61744 * 59.68752 * 6 5 4 28 28 O 1.34360 * 107.43773 * 359.56301 * 5 4 3 29 29 H 1.08996 * 109.47343 * 269.99803 * 1 2 3 30 30 H 1.08996 * 109.46874 * 30.00037 * 1 2 3 31 31 H 1.09003 * 109.47145 * 149.99930 * 1 2 3 32 32 H 1.08996 * 113.60936 * 25.42548 * 8 6 5 33 33 H 1.08998 * 113.66825 * 254.47234 * 8 6 5 34 34 H 0.96994 * 120.00134 * 74.13651 * 11 9 8 35 35 H 1.09006 * 109.46338 * 60.00905 * 14 12 11 36 36 H 1.08991 * 109.47518 * 300.00861 * 14 12 11 37 37 H 1.08005 * 125.03063 * 0.02936 * 16 15 14 38 38 H 1.09002 * 109.47060 * 225.02551 * 18 17 16 39 39 H 0.96700 * 114.00234 * 299.99722 * 19 18 17 40 40 H 1.48502 * 109.99951 * 180.02562 * 20 18 17 41 41 H 1.48507 * 109.99767 * 301.31682 * 20 18 17 42 42 H 1.08001 * 120.11545 * 359.35527 * 22 21 17 43 43 H 1.07998 * 119.73681 * 179.73839 * 23 22 21 44 44 H 1.08001 * 119.66931 * 179.97438 * 24 23 22 45 45 H 1.08004 * 120.11601 * 179.97438 * 25 24 23 46 46 H 1.08999 * 113.61383 * 105.38171 * 27 6 5 47 47 H 1.09006 * 113.61235 * 334.48934 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5091 0.6761 0.0058 5 6 3.5654 -0.6254 0.0001 6 6 4.8176 -1.4638 0.0001 7 1 4.6212 -2.5181 -0.1949 8 6 5.9540 -0.8809 -0.8597 9 6 6.9159 -1.3203 0.2567 10 1 7.2939 -2.3351 0.1331 11 7 7.9761 -0.3481 0.5343 12 6 9.2373 -0.5917 0.1264 13 8 9.4945 -1.6154 -0.4708 14 6 10.3278 0.4086 0.4113 15 7 11.5965 -0.0845 -0.1304 16 6 12.5376 -0.7788 0.5799 17 6 13.5787 -1.0802 -0.2121 18 6 14.8196 -1.8362 0.1873 19 8 14.7605 -3.1623 -0.3418 20 14 14.9286 -1.9134 2.0456 21 6 13.2826 -0.5291 -1.5367 22 6 13.9589 -0.5214 -2.7578 23 6 13.3947 0.0899 -3.8421 24 6 12.1520 0.6993 -3.7404 25 6 11.4647 0.6988 -2.5462 26 6 12.0195 0.0818 -1.4300 27 6 5.7215 -1.2212 1.2203 28 8 2.3021 -1.0831 0.0000 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 5.8957 0.2002 -0.9853 33 1 6.1063 -1.4098 -1.8005 34 1 7.7703 0.4708 1.0117 35 1 10.4215 0.5468 1.4885 36 1 10.0789 1.3609 -0.0568 37 1 12.4551 -1.0450 1.6234 38 1 15.6985 -1.3263 -0.2073 39 1 14.0016 -3.6757 -0.0325 40 1 16.1486 -2.6559 2.4524 41 1 14.9586 -0.5401 2.6100 42 1 14.9265 -0.9933 -2.8443 43 1 13.9203 0.0992 -4.7855 44 1 11.7192 1.1787 -4.6060 45 1 10.4983 1.1761 -2.4770 46 1 5.6863 -2.0244 1.9564 47 1 5.5995 -0.2332 1.6644 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_9818708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:09:07 Heat of formation + Delta-G solvation = 68.238416 kcal Electronic energy + Delta-G solvation = -32175.934019 eV Core-core repulsion = 27715.072382 eV Total energy + Delta-G solvation = -4460.861637 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.152 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.32396 -42.52284 -41.13458 -39.50647 -38.08526 -37.57639 -37.26972 -34.96728 -34.06027 -33.53310 -31.46763 -30.23119 -29.80558 -28.86408 -26.89699 -26.81135 -25.66827 -24.00099 -23.67568 -23.37795 -22.58821 -21.65714 -20.93921 -20.58707 -18.71160 -18.53427 -18.48000 -18.30236 -17.71599 -17.38456 -17.02777 -16.53555 -16.42180 -16.18976 -16.00121 -15.68857 -15.54853 -15.28071 -15.04214 -14.75515 -14.68350 -14.34022 -14.25104 -14.04735 -13.81208 -13.65238 -13.61023 -13.60140 -13.45383 -13.12793 -12.98441 -12.74428 -12.67447 -12.57149 -12.34471 -12.22573 -12.10680 -11.92110 -11.88065 -11.80478 -11.09842 -10.54520 -10.48822 -10.28959 -10.13530 -9.15489 -8.61855 -4.98727 0.05706 0.14391 0.63212 1.18062 1.23970 1.38249 1.44565 1.48458 1.70401 1.72329 2.01808 2.25058 2.77446 2.94458 3.19722 3.36541 3.47518 3.59640 3.64618 3.69170 3.70786 3.72736 3.77816 3.90173 4.02374 4.06030 4.18859 4.21719 4.29925 4.30553 4.41993 4.48578 4.50538 4.52587 4.56360 4.63216 4.67120 4.69005 4.72133 4.78896 4.82083 4.88236 4.88772 5.01383 5.10171 5.13323 5.46875 5.50291 5.65657 5.73250 5.75823 6.21052 6.24346 6.49675 6.84424 7.15369 7.19682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.168 3.832 3 N -0.331 5.331 4 N -0.311 5.311 5 C 0.176 3.824 6 C -0.022 4.022 7 H 0.146 0.854 8 C -0.135 4.135 9 C 0.134 3.866 10 H 0.116 0.884 11 N -0.702 5.702 12 C 0.497 3.503 13 O -0.564 6.564 14 C 0.085 3.915 15 N -0.466 5.466 16 C 0.081 3.919 17 C -0.226 4.226 18 C -0.047 4.047 19 O -0.564 6.564 20 Si 0.796 3.204 21 C -0.117 4.117 22 C -0.091 4.091 23 C -0.154 4.154 24 C -0.109 4.109 25 C -0.133 4.133 26 C 0.091 3.909 27 C -0.114 4.114 28 O -0.232 6.232 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.420 0.580 35 H 0.167 0.833 36 H 0.138 0.862 37 H 0.210 0.790 38 H 0.091 0.909 39 H 0.391 0.609 40 H -0.302 1.302 41 H -0.275 1.275 42 H 0.116 0.884 43 H 0.135 0.865 44 H 0.144 0.856 45 H 0.132 0.868 46 H 0.108 0.892 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.086 -0.019 6.204 10.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.043 4.043 3 N -0.178 5.178 4 N -0.156 5.156 5 C -0.036 4.036 6 C -0.043 4.043 7 H 0.164 0.836 8 C -0.174 4.174 9 C 0.028 3.972 10 H 0.134 0.866 11 N -0.355 5.355 12 C 0.282 3.718 13 O -0.442 6.442 14 C -0.040 4.040 15 N -0.148 5.148 16 C -0.044 4.044 17 C -0.233 4.233 18 C -0.156 4.156 19 O -0.372 6.372 20 Si 0.700 3.300 21 C -0.122 4.122 22 C -0.109 4.109 23 C -0.173 4.173 24 C -0.128 4.128 25 C -0.154 4.154 26 C -0.014 4.014 27 C -0.153 4.153 28 O -0.112 6.112 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.258 0.742 35 H 0.184 0.816 36 H 0.156 0.844 37 H 0.227 0.773 38 H 0.108 0.892 39 H 0.240 0.760 40 H -0.230 1.230 41 H -0.202 1.202 42 H 0.134 0.866 43 H 0.153 0.847 44 H 0.162 0.838 45 H 0.150 0.850 46 H 0.126 0.874 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.832 1.032 6.337 9.375 hybrid contribution -0.256 -0.485 -0.966 1.111 sum -7.088 0.547 5.371 8.910 Atomic orbital electron populations 1.20700 0.77028 1.07187 1.06910 1.28965 0.99345 0.78857 0.97170 1.74373 0.96567 1.27016 1.19827 1.74220 1.12641 1.10165 1.18593 1.28263 0.85395 0.91428 0.98507 1.21286 0.82758 0.98949 1.01271 0.83642 1.23603 0.92497 1.02561 0.98754 1.22254 0.85320 0.94528 0.95063 0.86590 1.45773 1.06862 1.24128 1.58742 1.21347 0.84449 0.87597 0.78363 1.90803 1.82847 1.29081 1.41474 1.22006 0.79781 0.97062 1.05108 1.43445 1.16128 1.48029 1.07219 1.22090 0.87868 0.95881 0.98554 1.20796 0.99770 1.09779 0.92981 1.24699 0.95308 0.83301 1.12265 1.86442 1.52060 1.24124 1.74560 0.93999 0.84818 0.79623 0.71520 1.19379 0.95414 1.02592 0.94775 1.20439 0.99705 0.99082 0.91711 1.20898 0.96864 1.00535 0.99008 1.21111 0.94855 0.99502 0.97377 1.20244 1.00993 1.03093 0.91055 1.18372 0.94925 1.01852 0.86299 1.23411 0.91170 1.05095 0.95604 1.84814 1.17825 1.38706 1.69889 0.86364 0.86602 0.86911 0.88891 0.90049 0.74211 0.81583 0.84390 0.77342 0.89166 0.75983 1.22978 1.20172 0.86625 0.84732 0.83844 0.85026 0.87370 0.88247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.48 10.51 71.24 0.75 1.23 16 2 C 0.17 0.37 8.48 88.34 0.75 1.12 16 3 N -0.33 -2.76 12.22 -165.50 -2.02 -4.78 16 4 N -0.31 -2.24 11.86 -165.51 -1.96 -4.20 16 5 C 0.18 0.37 7.54 88.34 0.67 1.04 16 6 C -0.02 0.12 4.29 -10.95 -0.05 0.07 16 7 H 0.15 -1.31 8.14 -2.39 -0.02 -1.33 16 8 C -0.13 0.57 7.44 31.18 0.23 0.81 16 9 C 0.13 -0.89 4.21 45.52 0.19 -0.70 16 10 H 0.12 -0.48 7.50 -2.39 -0.02 -0.49 16 11 N -0.70 5.87 5.36 -440.04 -2.36 3.51 16 12 C 0.50 -1.51 7.90 87.66 0.69 -0.81 16 13 O -0.56 -4.34 16.04 -3.02 -0.05 -4.39 16 14 C 0.08 -0.67 6.48 85.63 0.56 -0.12 16 15 N -0.47 -0.47 2.27 -519.99 -1.18 -1.65 16 16 C 0.08 -0.01 9.89 83.00 0.82 0.81 16 17 C -0.23 -1.26 5.58 -18.63 -0.10 -1.36 16 18 C -0.05 -0.20 3.06 71.24 0.22 0.02 16 19 O -0.56 -3.50 12.88 -148.98 -1.92 -5.42 16 20 Si 0.80 -1.23 30.75 68.60 2.11 0.87 16 21 C -0.12 -1.22 6.35 -20.20 -0.13 -1.35 16 22 C -0.09 -0.96 10.05 22.23 0.22 -0.74 16 23 C -0.15 -1.19 9.97 22.03 0.22 -0.97 16 24 C -0.11 -0.65 10.01 22.29 0.22 -0.42 16 25 C -0.13 -0.80 10.00 22.37 0.22 -0.57 16 26 C 0.09 0.68 6.80 39.03 0.27 0.94 16 27 C -0.11 1.01 7.38 31.12 0.23 1.24 16 28 O -0.23 -0.64 10.87 -3.63 -0.04 -0.68 16 29 H 0.12 -1.31 8.14 -2.39 -0.02 -1.33 16 30 H 0.12 -1.06 8.14 -2.39 -0.02 -1.08 16 31 H 0.11 -1.28 8.14 -2.39 -0.02 -1.30 16 32 H 0.09 -0.17 7.80 -2.39 -0.02 -0.18 16 33 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 34 H 0.42 -5.88 8.71 -92.71 -0.81 -6.69 16 35 H 0.17 -2.74 8.12 -2.38 -0.02 -2.76 16 36 H 0.14 -1.61 8.14 -2.39 -0.02 -1.63 16 37 H 0.21 -1.94 6.35 -2.91 -0.02 -1.96 16 38 H 0.09 0.62 7.96 -2.39 -0.02 0.60 16 39 H 0.39 -0.60 8.70 -74.06 -0.64 -1.24 16 40 H -0.30 -1.88 7.11 99.48 0.71 -1.17 16 41 H -0.28 -0.47 7.11 99.48 0.71 0.23 16 42 H 0.12 1.15 8.06 -2.91 -0.02 1.13 16 43 H 0.13 0.50 8.06 -2.91 -0.02 0.48 16 44 H 0.14 0.14 8.06 -2.91 -0.02 0.11 16 45 H 0.13 0.18 8.06 -2.91 -0.02 0.15 16 46 H 0.11 -1.25 8.14 -2.39 -0.02 -1.27 16 47 H 0.10 -0.81 8.06 -2.38 -0.02 -0.83 16 Total: 0.00 -35.49 404.82 -1.82 -37.31 By element: Atomic # 1 Polarization: -20.44 SS G_CDS: -0.38 Total: -20.82 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 5.98 Total: 0.24 kcal Atomic # 7 Polarization: 0.40 SS G_CDS: -7.52 Total: -7.13 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -2.01 Total: -10.49 kcal Atomic # 14 Polarization: -1.23 SS G_CDS: 2.11 Total: 0.87 kcal Total: -35.49 -1.82 -37.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_9818708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.550 kcal (2) G-P(sol) polarization free energy of solvation -35.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds