Wall clock time and date at job start Sun Mar 7 2021 04:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30276 * 126.28455 * 2 1 4 4 N 1.28666 * 109.38486 * 180.02562 * 3 2 1 5 5 C 1.30271 * 109.37991 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.28352 * 179.97438 * 5 4 3 7 7 H 1.09000 * 112.90925 * 168.77648 * 6 5 4 8 8 C 1.53784 * 113.61605 * 300.03300 * 6 5 4 9 9 C 1.53787 * 87.07923 * 139.97671 * 8 6 5 10 10 H 1.08998 * 113.61103 * 89.12089 * 9 8 6 11 11 N 1.46499 * 113.61131 * 219.93470 * 9 8 6 12 12 C 1.34781 * 119.99685 * 205.00286 * 11 9 8 13 13 O 1.21627 * 120.00023 * 359.97438 * 12 11 9 14 14 C 1.47258 * 120.00115 * 180.02562 * 12 11 9 15 15 C 1.36764 * 126.94498 * 179.71183 * 14 12 11 16 16 C 1.50696 * 125.80082 * 359.97251 * 15 14 12 17 17 N 1.34659 * 108.39704 * 179.83553 * 15 14 12 18 18 C 1.36445 * 110.30086 * 0.44403 * 17 15 14 19 19 C 1.50699 * 125.57624 * 179.70915 * 18 17 15 20 20 O 1.42893 * 109.47021 * 245.02228 * 19 18 17 21 21 Si 1.86304 * 109.46810 * 5.02409 * 19 18 17 22 22 C 1.34483 * 108.85323 * 359.72600 * 18 17 15 23 23 C 1.53778 * 87.08035 * 334.56830 * 9 8 6 24 24 O 1.34364 * 107.43875 * 0.25099 * 5 4 3 25 25 H 1.09000 * 109.47189 * 89.98067 * 1 2 3 26 26 H 1.09004 * 109.46651 * 209.97643 * 1 2 3 27 27 H 1.08994 * 109.47026 * 329.97447 * 1 2 3 28 28 H 1.09004 * 113.61451 * 25.43157 * 8 6 5 29 29 H 1.08994 * 113.61477 * 254.52459 * 8 6 5 30 30 H 0.96993 * 120.00646 * 25.00150 * 11 9 8 31 31 H 1.09007 * 109.47378 * 90.00431 * 16 15 14 32 32 H 1.09000 * 109.47656 * 209.99833 * 16 15 14 33 33 H 1.08997 * 109.47749 * 330.00519 * 16 15 14 34 34 H 0.97010 * 124.85008 * 180.15116 * 17 15 14 35 35 H 1.09002 * 109.47318 * 125.01611 * 19 18 17 36 36 H 0.96707 * 113.99827 * 179.97438 * 20 19 18 37 37 H 1.48504 * 110.00000 * 299.99722 * 21 19 18 38 38 H 1.48494 * 110.00380 * 61.31779 * 21 19 18 39 39 H 1.08003 * 126.83270 * 180.02562 * 22 18 17 40 40 H 1.08999 * 113.61111 * 139.98327 * 23 9 8 41 41 H 1.09004 * 113.61682 * 270.87724 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6761 -0.0005 5 6 3.5654 -0.6254 -0.0004 6 6 4.8176 -1.4638 -0.0014 7 1 4.6225 -2.5182 0.1944 8 6 5.7208 -1.2208 -1.2221 9 6 6.9156 -1.3179 -0.2588 10 1 7.2940 -2.3324 -0.1335 11 7 7.9754 -0.3459 -0.5385 12 6 9.2426 -0.6025 -0.1579 13 8 9.5062 -1.6407 0.4183 14 6 10.3079 0.3748 -0.4385 15 6 11.6317 0.2637 -0.1136 16 6 12.2683 -0.8972 0.6062 17 7 12.2701 1.3665 -0.5488 18 6 11.3892 2.2168 -1.1510 19 6 11.7344 3.5537 -1.7548 20 8 11.0857 4.5913 -1.0170 21 14 13.5792 3.8062 -1.6907 22 6 10.1624 1.6670 -1.1174 23 6 5.9519 -0.8778 0.8558 24 8 2.3021 -1.0831 -0.0053 25 1 -0.3633 0.0003 -1.0277 26 1 -0.3633 -0.8902 0.5135 27 1 -0.3633 0.8897 0.5142 28 1 5.5976 -0.2332 -1.6667 29 1 5.6864 -2.0244 -1.9576 30 1 7.7652 0.4822 -0.9977 31 1 12.6047 -1.6357 -0.1216 32 1 13.1215 -0.5425 1.1845 33 1 11.5396 -1.3533 1.2762 34 1 13.2199 1.5346 -0.4449 35 1 11.3998 3.5814 -2.7918 36 1 11.2639 5.4815 -1.3504 37 1 14.0481 3.7706 -0.2821 38 1 14.2639 2.7517 -2.4808 39 1 9.2513 2.0920 -1.5122 40 1 6.1042 -1.4046 1.7978 41 1 5.8919 0.2036 0.9794 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_9865296.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:09:12 Heat of formation + Delta-G solvation = 38.044152 kcal Electronic energy + Delta-G solvation = -25928.204671 eV Core-core repulsion = 22006.249752 eV Total energy + Delta-G solvation = -3921.954918 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.32462 -42.60166 -40.97467 -39.25679 -37.66714 -37.27068 -34.92577 -33.63341 -32.98764 -32.18619 -29.67016 -29.03333 -27.02033 -26.89020 -25.55405 -24.13773 -23.58755 -22.72380 -21.58469 -21.22179 -20.33071 -18.63124 -18.54243 -18.47501 -18.16595 -17.35505 -17.23924 -16.43727 -16.23952 -15.85718 -15.69201 -15.56091 -15.23329 -14.96154 -14.54598 -14.47797 -14.24188 -14.21196 -13.83363 -13.71291 -13.63155 -13.59998 -13.56534 -13.42183 -12.98062 -12.94764 -12.66552 -12.49549 -12.32888 -12.13941 -11.90628 -11.87559 -10.98785 -10.49229 -10.37117 -10.20973 -9.92021 -9.26876 -5.12064 0.05538 0.56865 1.07911 1.17519 1.19140 1.24423 1.55621 1.78966 1.83177 2.32724 2.41810 2.78535 3.21178 3.36869 3.40469 3.50457 3.67497 3.68527 3.73415 3.84916 3.96757 4.04127 4.07929 4.30374 4.38921 4.43454 4.44078 4.50962 4.52787 4.59039 4.62792 4.65726 4.67069 4.68980 4.81846 4.87389 4.90664 5.01447 5.06567 5.19984 5.52303 5.59353 5.73872 6.19010 6.56582 6.88845 7.20181 7.25777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.167 3.833 3 N -0.332 5.332 4 N -0.314 5.314 5 C 0.176 3.824 6 C -0.017 4.017 7 H 0.152 0.848 8 C -0.118 4.118 9 C 0.131 3.869 10 H 0.122 0.878 11 N -0.705 5.705 12 C 0.593 3.407 13 O -0.580 6.580 14 C -0.262 4.262 15 C 0.111 3.889 16 C -0.095 4.095 17 N -0.550 5.550 18 C 0.001 3.999 19 C -0.050 4.050 20 O -0.563 6.563 21 Si 0.776 3.224 22 C -0.132 4.132 23 C -0.134 4.134 24 O -0.231 6.231 25 H 0.118 0.882 26 H 0.113 0.887 27 H 0.116 0.884 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.411 0.589 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.415 0.585 35 H 0.109 0.891 36 H 0.406 0.594 37 H -0.293 1.293 38 H -0.281 1.281 39 H 0.163 0.837 40 H 0.088 0.912 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.073 1.743 -4.540 4.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.044 4.044 3 N -0.178 5.178 4 N -0.159 5.159 5 C -0.035 4.035 6 C -0.037 4.037 7 H 0.170 0.830 8 C -0.157 4.157 9 C 0.026 3.974 10 H 0.140 0.860 11 N -0.355 5.355 12 C 0.384 3.616 13 O -0.461 6.461 14 C -0.272 4.272 15 C -0.008 4.008 16 C -0.152 4.152 17 N -0.150 5.150 18 C -0.107 4.107 19 C -0.160 4.160 20 O -0.374 6.374 21 Si 0.680 3.320 22 C -0.156 4.156 23 C -0.174 4.174 24 O -0.111 6.111 25 H 0.136 0.864 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.112 0.888 29 H 0.127 0.873 30 H 0.248 0.752 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.255 0.745 35 H 0.126 0.874 36 H 0.258 0.742 37 H -0.220 1.220 38 H -0.208 1.208 39 H 0.181 0.819 40 H 0.106 0.894 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.136 1.518 -3.594 4.063 hybrid contribution -0.513 -0.828 0.050 0.976 sum 0.623 0.690 -3.544 3.663 Atomic orbital electron populations 1.20703 0.76867 1.07227 1.06916 1.29004 0.99375 0.78852 0.97125 1.74369 0.96494 1.27103 1.19850 1.74243 1.12725 1.10322 1.18598 1.28238 0.85407 0.91381 0.98486 1.21235 0.82582 0.99150 1.00770 0.83034 1.23431 0.91538 1.04803 0.95882 1.22342 0.85189 0.94577 0.95320 0.86029 1.45618 1.06611 1.23080 1.60218 1.17461 0.82417 0.84725 0.77044 1.90718 1.83285 1.27959 1.44169 1.20259 0.93195 0.98945 1.14789 1.20686 0.91855 0.90039 0.98199 1.20626 1.01292 0.93193 1.00118 1.41849 1.10676 1.16069 1.46421 1.19814 0.90259 0.94573 1.06023 1.24187 1.10828 0.83840 0.97191 1.86466 1.74199 1.18632 1.58053 0.93502 0.71742 0.88086 0.78650 1.22027 0.97284 0.93302 1.03031 1.23572 0.92465 1.02391 0.98959 1.84812 1.17701 1.38658 1.69912 0.86362 0.86810 0.86581 0.88836 0.87314 0.75244 0.89401 0.89806 0.89287 0.74507 0.87373 0.74161 1.21986 1.20777 0.81928 0.89375 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.37 10.51 71.23 0.75 1.12 16 2 C 0.17 0.77 8.48 88.34 0.75 1.52 16 3 N -0.33 -3.73 12.22 -165.50 -2.02 -5.75 16 4 N -0.31 -3.47 11.83 -165.50 -1.96 -5.43 16 5 C 0.18 0.99 7.53 88.34 0.67 1.66 16 6 C -0.02 0.02 4.29 -11.01 -0.05 -0.03 16 7 H 0.15 -0.94 8.14 -2.39 -0.02 -0.96 16 8 C -0.12 0.34 7.38 31.12 0.23 0.57 16 9 C 0.13 0.05 4.24 45.52 0.19 0.24 16 10 H 0.12 0.18 7.46 -2.39 -0.02 0.16 16 11 N -0.71 -2.21 5.35 -443.45 -2.37 -4.58 16 12 C 0.59 5.47 7.81 86.61 0.68 6.15 16 13 O -0.58 -8.40 14.41 -4.12 -0.06 -8.46 16 14 C -0.26 -2.17 6.29 -19.04 -0.12 -2.29 16 15 C 0.11 0.76 7.17 41.78 0.30 1.06 16 16 C -0.10 -0.36 9.88 71.23 0.70 0.35 16 17 N -0.55 -2.32 5.41 -171.08 -0.93 -3.24 16 18 C 0.00 0.00 6.13 40.98 0.25 0.25 16 19 C -0.05 0.14 2.97 71.24 0.21 0.35 16 20 O -0.56 1.03 12.86 -148.98 -1.92 -0.89 16 21 Si 0.78 -4.11 30.96 68.60 2.12 -1.98 16 22 C -0.13 -0.68 10.45 23.62 0.25 -0.43 16 23 C -0.13 -0.13 7.42 31.12 0.23 0.10 16 24 O -0.23 -1.22 10.87 -3.74 -0.04 -1.26 16 25 H 0.12 -1.11 8.14 -2.39 -0.02 -1.13 16 26 H 0.11 -1.12 8.14 -2.39 -0.02 -1.14 16 27 H 0.12 -0.87 8.14 -2.39 -0.02 -0.89 16 28 H 0.09 -0.12 8.07 -2.39 -0.02 -0.14 16 29 H 0.11 -0.68 8.14 -2.39 -0.02 -0.70 16 30 H 0.41 -0.03 7.85 -92.71 -0.73 -0.76 16 31 H 0.09 0.19 8.14 -2.38 -0.02 0.17 16 32 H 0.08 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.09 0.68 6.47 -2.39 -0.02 0.67 16 34 H 0.42 0.29 6.72 -92.70 -0.62 -0.33 16 35 H 0.11 -0.78 7.96 -2.39 -0.02 -0.80 16 36 H 0.41 -5.13 8.74 -74.05 -0.65 -5.77 16 37 H -0.29 -0.49 7.11 99.48 0.71 0.21 16 38 H -0.28 0.11 7.11 99.48 0.71 0.82 16 39 H 0.16 0.17 7.70 -2.91 -0.02 0.15 16 40 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 41 H 0.09 0.40 7.78 -2.38 -0.02 0.38 16 Total: 0.00 -28.08 352.57 -2.99 -31.07 By element: Atomic # 1 Polarization: -9.25 SS G_CDS: -0.85 Total: -10.10 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 5.04 Total: 10.62 kcal Atomic # 7 Polarization: -11.72 SS G_CDS: -7.28 Total: -19.01 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -2.02 Total: -10.60 kcal Atomic # 14 Polarization: -4.11 SS G_CDS: 2.12 Total: -1.98 kcal Total: -28.08 -2.99 -31.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_9865296.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.112 kcal (2) G-P(sol) polarization free energy of solvation -28.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds