Wall clock time and date at job start Sun Mar 7 2021 05:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99871 * 2 1 4 4 C 1.53009 * 109.47083 * 269.99768 * 3 2 1 5 5 H 1.09002 * 112.84408 * 45.33837 * 4 3 2 6 6 C 1.53778 * 113.61401 * 176.52885 * 4 3 2 7 7 C 1.53775 * 87.08173 * 140.06492 * 6 4 3 8 8 H 1.09005 * 113.61370 * 89.19595 * 7 6 4 9 9 O 1.42898 * 113.62112 * 220.01728 * 7 6 4 10 10 C 1.42893 * 114.00566 * 210.00361 * 9 7 6 11 11 C 1.52997 * 109.47215 * 59.99513 * 10 9 7 12 12 C 1.52993 * 109.47206 * 180.02562 * 10 9 7 13 13 C 1.53005 * 109.47112 * 299.99967 * 10 9 7 14 14 C 1.53777 * 113.69177 * 274.06507 * 4 3 2 15 15 C 1.34777 * 119.99945 * 180.02562 * 2 1 3 16 16 O 1.21693 * 119.99918 * 174.36457 * 15 2 1 17 17 C 1.46675 * 120.00231 * 354.35827 * 15 2 1 18 18 C 1.37873 * 126.23100 * 1.42048 * 17 15 2 19 19 C 1.39833 * 107.08709 * 179.84380 * 18 17 15 20 20 C 1.50700 * 126.06926 * 180.13620 * 19 18 17 21 21 O 1.42899 * 109.46798 * 65.31113 * 20 19 18 22 22 Si 1.86306 * 109.47058 * 185.30803 * 20 19 18 23 23 C 1.35451 * 107.86098 * 0.42282 * 19 18 17 24 24 N 1.35529 * 108.87462 * 359.73957 * 23 19 18 25 25 C 1.46506 * 125.68303 * 179.97438 * 24 23 19 26 26 H 1.08997 * 109.47100 * 113.87546 * 1 2 3 27 27 H 1.08995 * 109.47028 * 233.87802 * 1 2 3 28 28 H 1.09002 * 109.47158 * 353.88152 * 1 2 3 29 29 H 1.09000 * 109.47276 * 150.00511 * 3 2 1 30 30 H 1.08997 * 109.47396 * 29.99650 * 3 2 1 31 31 H 1.08996 * 113.61853 * 254.61678 * 6 4 3 32 32 H 1.09004 * 113.61687 * 25.52118 * 6 4 3 33 33 H 1.09004 * 109.47077 * 60.00589 * 11 10 9 34 34 H 1.08998 * 109.47267 * 180.02562 * 11 10 9 35 35 H 1.08993 * 109.47525 * 300.00523 * 11 10 9 36 36 H 1.08999 * 109.47707 * 59.99913 * 12 10 9 37 37 H 1.09006 * 109.47109 * 179.97438 * 12 10 9 38 38 H 1.09004 * 109.47054 * 299.99391 * 12 10 9 39 39 H 1.08997 * 109.47125 * 59.99509 * 13 10 9 40 40 H 1.08992 * 109.47570 * 180.02562 * 13 10 9 41 41 H 1.09005 * 109.46732 * 300.00241 * 13 10 9 42 42 H 1.09004 * 113.61633 * 334.55679 * 14 4 3 43 43 H 1.08999 * 113.61146 * 105.45764 * 14 4 3 44 44 H 1.08002 * 126.45802 * 359.96831 * 18 17 15 45 45 H 1.08991 * 109.47402 * 305.30885 * 20 19 18 46 46 H 0.96698 * 114.00018 * 60.00003 * 21 20 19 47 47 H 1.48503 * 109.99663 * 58.68345 * 22 20 19 48 48 H 1.48493 * 109.99885 * 180.02562 * 22 20 19 49 49 H 1.08007 * 125.56411 * 179.69840 * 23 19 18 50 50 H 1.09000 * 109.46930 * 275.18087 * 25 24 23 51 51 H 1.09002 * 109.46896 * 35.17233 * 25 24 23 52 52 H 1.08997 * 109.47052 * 155.17349 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4426 5 1 1.5715 1.6133 -2.0769 6 6 3.1443 3.0792 -1.5546 7 6 3.9721 2.4790 -2.7031 8 1 3.5071 2.5932 -3.6824 9 8 5.3438 2.8791 -2.6901 10 6 5.9450 2.9362 -3.9852 11 6 5.1893 3.9432 -4.8544 12 6 7.4053 3.3723 -3.8508 13 6 5.8843 1.5533 -4.6371 14 6 3.7249 1.1050 -2.0584 15 6 2.1389 -1.1672 -0.0005 16 8 3.3514 -1.1697 -0.1040 17 6 1.4109 -2.4344 0.1238 18 6 0.0435 -2.5826 0.2203 19 6 -0.2153 -3.9534 0.3173 20 6 -1.5743 -4.5932 0.4392 21 8 -2.3200 -4.3591 -0.7571 22 14 -1.3761 -6.4275 0.6984 23 6 0.9726 -4.6036 0.2887 24 7 1.9686 -3.6920 0.1714 25 6 3.4006 -3.9945 0.1066 26 1 -0.3633 -0.4159 -0.9397 27 1 -0.3633 -0.6058 0.8301 28 1 -0.3633 1.0218 0.1095 29 1 3.1499 1.1384 0.5137 30 1 1.6084 2.0284 0.5138 31 1 2.4770 3.8813 -1.8700 32 1 3.7383 3.3413 -0.6789 33 1 5.2325 4.9285 -4.3901 34 1 5.6475 3.9864 -5.8424 35 1 4.1491 3.6321 -4.9501 36 1 7.9435 2.6545 -3.2318 37 1 7.8640 3.4154 -4.8387 38 1 7.4490 4.3575 -3.3863 39 1 4.8441 1.2420 -4.7327 40 1 6.3432 1.5966 -5.6247 41 1 6.4227 0.8357 -4.0178 42 1 4.4776 0.8272 -1.3205 43 1 3.5263 0.3131 -2.7805 44 1 -0.6896 -1.7896 0.2190 45 1 -2.1043 -4.1616 1.2881 46 1 -1.9066 -4.7169 -1.5546 47 1 -0.5750 -6.6838 1.9223 48 1 -2.7092 -7.0703 0.8195 49 1 1.1046 -5.6738 0.3500 50 1 3.7969 -4.0945 1.1171 51 1 3.5506 -4.9276 -0.4364 52 1 3.9196 -3.1865 -0.4091 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15093190_10803934.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:22:29 Heat of formation + Delta-G solvation = -9.734333 kcal Electronic energy + Delta-G solvation = -30590.139336 eV Core-core repulsion = 26559.492354 eV Total energy + Delta-G solvation = -4030.646982 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.209 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.63690 -41.11788 -40.14618 -38.36484 -37.64213 -36.65325 -34.02213 -33.72859 -31.51844 -29.37531 -28.50239 -28.38850 -28.04225 -27.82199 -26.56418 -25.44293 -24.29844 -22.55253 -21.39861 -20.79262 -20.54282 -19.92889 -18.25464 -17.85701 -17.65149 -17.11037 -17.04577 -16.71933 -16.52057 -15.96410 -15.91803 -15.59361 -15.49790 -15.26677 -14.99225 -14.70432 -14.59336 -14.34291 -14.12820 -13.99204 -13.81567 -13.51981 -13.45769 -13.37935 -13.27176 -13.21156 -13.12576 -12.93367 -12.79077 -12.70518 -12.33329 -12.24503 -12.10536 -12.03900 -11.83826 -11.72911 -11.36828 -11.22553 -10.99616 -10.36545 -10.26584 -9.78370 -9.63160 -9.23521 -4.94863 0.42910 1.42794 1.53581 1.55493 1.73376 2.04269 2.23046 2.29430 2.73960 3.41467 3.60577 3.65370 3.71598 3.80151 3.83160 3.84714 3.88705 3.97785 4.04470 4.07525 4.12772 4.24930 4.26319 4.33524 4.36134 4.41301 4.48781 4.55655 4.58285 4.62729 4.68413 4.71606 4.72451 4.74952 4.79914 4.80474 4.85295 4.85704 4.88613 4.90245 4.91830 5.02971 5.09725 5.18481 5.22535 5.29180 5.32004 5.39527 5.50976 5.72955 5.91095 6.17515 6.29878 6.42613 6.91531 7.08093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.600 5.600 3 C 0.132 3.868 4 C -0.115 4.115 5 H 0.103 0.897 6 C -0.120 4.120 7 C 0.058 3.942 8 H 0.097 0.903 9 O -0.384 6.384 10 C 0.097 3.903 11 C -0.174 4.174 12 C -0.139 4.139 13 C -0.172 4.172 14 C -0.134 4.134 15 C 0.578 3.422 16 O -0.576 6.576 17 C -0.078 4.078 18 C -0.137 4.137 19 C -0.222 4.222 20 C -0.033 4.033 21 O -0.558 6.558 22 Si 0.775 3.225 23 C 0.031 3.969 24 N -0.414 5.414 25 C 0.060 3.940 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.050 0.950 42 H 0.067 0.933 43 H 0.047 0.953 44 H 0.183 0.817 45 H 0.103 0.897 46 H 0.393 0.607 47 H -0.287 1.287 48 H -0.303 1.303 49 H 0.199 0.801 50 H 0.078 0.922 51 H 0.112 0.888 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.978 -0.492 -3.195 3.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.330 5.330 3 C 0.010 3.990 4 C -0.134 4.134 5 H 0.122 0.878 6 C -0.158 4.158 7 C 0.000 4.000 8 H 0.115 0.885 9 O -0.304 6.304 10 C 0.058 3.942 11 C -0.232 4.232 12 C -0.196 4.196 13 C -0.229 4.229 14 C -0.172 4.172 15 C 0.369 3.631 16 O -0.458 6.458 17 C -0.190 4.190 18 C -0.162 4.162 19 C -0.228 4.228 20 C -0.144 4.144 21 O -0.366 6.366 22 Si 0.682 3.318 23 C -0.106 4.106 24 N -0.086 5.086 25 C -0.081 4.081 26 H 0.091 0.909 27 H 0.103 0.897 28 H 0.119 0.881 29 H 0.082 0.918 30 H 0.126 0.874 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.200 0.800 45 H 0.120 0.880 46 H 0.242 0.758 47 H -0.214 1.214 48 H -0.231 1.231 49 H 0.216 0.784 50 H 0.097 0.903 51 H 0.131 0.869 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.377 -0.850 -2.163 2.701 hybrid contribution 0.052 0.285 0.232 0.371 sum -1.325 -0.565 -1.931 2.409 Atomic orbital electron populations 1.22716 0.77501 1.05237 1.02919 1.47527 1.08195 1.04857 1.72465 1.21573 0.97403 0.83955 0.96110 1.22674 0.97399 0.96338 0.97034 0.87840 1.23153 0.97602 0.96522 0.98559 1.23768 0.82346 0.94887 0.98978 0.88536 1.88015 1.24954 1.88342 1.29067 1.21681 0.94297 0.94839 0.83353 1.22424 1.00780 0.99313 1.00637 1.21790 0.92983 1.01697 1.03122 1.22424 1.02248 0.96633 1.01609 1.23361 0.97748 0.96396 0.99664 1.17259 0.86057 0.83470 0.76273 1.90756 1.14881 1.87558 1.52592 1.20104 0.93124 0.85779 1.20010 1.22596 0.93125 0.97820 1.02665 1.19986 0.94877 0.94400 1.13586 1.24407 0.88923 1.10798 0.90279 1.86437 1.49668 1.82948 1.17530 0.94014 0.79019 0.73989 0.84814 1.22333 0.86381 0.96174 1.05674 1.44020 1.07874 1.04878 1.51865 1.22436 0.76611 1.04660 1.04368 0.90893 0.89697 0.88105 0.91818 0.87364 0.89147 0.89721 0.91939 0.90315 0.91936 0.92761 0.89580 0.92069 0.92539 0.90321 0.93074 0.91434 0.93393 0.80037 0.87958 0.75791 1.21405 1.23118 0.78433 0.90302 0.86934 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.28 8.63 127.77 1.10 0.82 16 2 N -0.60 -1.02 2.87 -851.50 -2.45 -3.46 16 3 C 0.13 0.08 5.20 86.38 0.45 0.53 16 4 C -0.12 -0.03 3.96 -10.27 -0.04 -0.07 16 5 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 6 C -0.12 -0.01 7.47 31.12 0.23 0.22 16 7 C 0.06 0.19 2.82 31.12 0.09 0.28 16 8 H 0.10 0.10 5.54 -2.38 -0.01 0.09 16 9 O -0.38 -2.83 10.00 -148.98 -1.49 -4.32 16 10 C 0.10 0.31 1.11 -10.79 -0.01 0.30 16 11 C -0.17 0.01 8.38 71.98 0.60 0.61 16 12 C -0.14 -0.28 8.84 71.98 0.64 0.36 16 13 C -0.17 -0.40 8.38 71.98 0.60 0.20 16 14 C -0.13 -0.77 6.61 31.12 0.21 -0.57 16 15 C 0.58 4.44 7.63 86.45 0.66 5.10 16 16 O -0.58 -7.68 12.94 -4.33 -0.06 -7.73 16 17 C -0.08 -0.42 6.83 40.35 0.28 -0.15 16 18 C -0.14 -0.28 8.81 22.57 0.20 -0.08 16 19 C -0.22 -0.11 5.43 -20.12 -0.11 -0.22 16 20 C -0.03 0.03 3.02 71.24 0.22 0.25 16 21 O -0.56 0.20 12.88 -148.98 -1.92 -1.72 16 22 Si 0.77 -2.30 30.60 68.60 2.10 -0.20 16 23 C 0.03 -0.02 9.94 83.48 0.83 0.81 16 24 N -0.41 -1.31 3.16 -534.30 -1.69 -3.00 16 25 C 0.06 0.02 10.74 127.77 1.37 1.39 16 26 H 0.07 -0.39 7.40 -2.39 -0.02 -0.40 16 27 H 0.09 -0.43 5.41 -2.39 -0.01 -0.44 16 28 H 0.10 -0.94 7.76 -2.39 -0.02 -0.96 16 29 H 0.06 0.36 7.24 -2.39 -0.02 0.35 16 30 H 0.11 -0.51 7.87 -2.39 -0.02 -0.53 16 31 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.08 0.16 8.10 -2.38 -0.02 0.15 16 33 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 34 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 35 H 0.06 -0.05 6.24 -2.39 -0.01 -0.07 16 36 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.09 -0.13 8.14 -2.38 -0.02 -0.15 16 38 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.06 0.14 7.02 -2.39 -0.02 0.12 16 40 H 0.08 -0.05 8.14 -2.39 -0.02 -0.07 16 41 H 0.05 0.26 8.14 -2.38 -0.02 0.24 16 42 H 0.07 0.80 7.55 -2.39 -0.02 0.78 16 43 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.18 -0.33 4.05 -2.91 -0.01 -0.35 16 45 H 0.10 0.03 7.96 -2.39 -0.02 0.01 16 46 H 0.39 -3.10 8.70 -74.06 -0.64 -3.74 16 47 H -0.29 -0.56 7.11 99.48 0.71 0.15 16 48 H -0.30 -1.52 7.11 99.48 0.71 -0.81 16 49 H 0.20 -1.48 6.21 -2.91 -0.02 -1.50 16 50 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 51 H 0.11 -0.67 8.14 -2.39 -0.02 -0.69 16 52 H 0.09 0.47 6.00 -2.39 -0.01 0.46 16 Total: 0.00 -20.22 401.26 2.12 -18.10 By element: Atomic # 1 Polarization: -7.74 SS G_CDS: 0.31 Total: -7.44 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 7.31 Total: 9.77 kcal Atomic # 7 Polarization: -2.32 SS G_CDS: -4.14 Total: -6.46 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -3.46 Total: -13.78 kcal Atomic # 14 Polarization: -2.30 SS G_CDS: 2.10 Total: -0.20 kcal Total: -20.22 2.12 -18.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15093190_10803934.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.367 kcal (2) G-P(sol) polarization free energy of solvation -20.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds