Wall clock time and date at job start Sun Mar 7 2021 05:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36418 * 125.80082 * 2 1 4 4 C 1.47374 * 127.18838 * 359.97438 * 3 2 1 5 5 O 1.21614 * 120.00229 * 34.76505 * 4 3 2 6 6 N 1.34778 * 119.99823 * 214.75814 * 4 3 2 7 7 C 1.46497 * 120.00018 * 355.56757 * 6 4 3 8 8 C 1.46504 * 119.99952 * 175.55722 * 6 4 3 9 9 C 1.53000 * 109.46688 * 90.00696 * 8 6 4 10 10 H 1.08997 * 112.90999 * 316.24498 * 9 8 6 11 11 C 1.53776 * 113.61774 * 87.50227 * 9 8 6 12 12 C 1.53781 * 87.08525 * 139.97831 * 11 9 8 13 13 H 1.09002 * 113.61230 * 89.11266 * 12 11 9 14 14 O 1.42904 * 113.69387 * 220.00965 * 12 11 9 15 15 C 1.42899 * 113.99877 * 247.53193 * 14 12 11 16 16 C 1.53003 * 109.46998 * 60.00437 * 15 14 12 17 17 C 1.52994 * 109.47012 * 179.97438 * 15 14 12 18 18 C 1.52994 * 109.47574 * 300.00110 * 15 14 12 19 19 C 1.53783 * 87.08105 * 334.56955 * 12 11 9 20 20 C 1.47017 * 105.61732 * 179.73488 * 3 2 1 21 21 C 1.34184 * 105.95333 * 0.25937 * 20 3 2 22 22 C 1.50696 * 125.43714 * 179.97438 * 21 20 3 23 23 O 1.42894 * 109.47536 * 300.00328 * 22 21 20 24 24 Si 1.86300 * 109.47231 * 180.02562 * 22 21 20 25 25 O 1.33656 * 125.80392 * 180.18382 * 2 1 3 26 26 H 1.09007 * 109.46911 * 90.00545 * 1 2 3 27 27 H 1.09002 * 109.47250 * 209.99663 * 1 2 3 28 28 H 1.08991 * 109.47461 * 329.99906 * 1 2 3 29 29 H 1.09008 * 109.46934 * 275.35324 * 7 6 4 30 30 H 1.08992 * 109.47529 * 35.35426 * 7 6 4 31 31 H 1.09003 * 109.47093 * 155.35898 * 7 6 4 32 32 H 1.08994 * 109.47474 * 330.00951 * 8 6 4 33 33 H 1.08999 * 109.47260 * 210.00030 * 8 6 4 34 34 H 1.09007 * 113.61536 * 25.43407 * 11 9 8 35 35 H 1.08999 * 113.69665 * 254.53840 * 11 9 8 36 36 H 1.08997 * 109.47202 * 59.99241 * 16 15 14 37 37 H 1.09001 * 109.47350 * 180.02562 * 16 15 14 38 38 H 1.09009 * 109.46726 * 299.99682 * 16 15 14 39 39 H 1.09000 * 109.47168 * 60.00267 * 17 15 14 40 40 H 1.09002 * 109.47518 * 180.02562 * 17 15 14 41 41 H 1.09008 * 109.47329 * 300.00224 * 17 15 14 42 42 H 1.09009 * 109.47087 * 59.99745 * 18 15 14 43 43 H 1.08992 * 109.47674 * 179.97438 * 18 15 14 44 44 H 1.09007 * 109.47299 * 300.00383 * 18 15 14 45 45 H 1.08996 * 113.61518 * 139.98008 * 19 12 11 46 46 H 1.08997 * 113.61251 * 270.88398 * 19 12 11 47 47 H 1.07997 * 127.02709 * 180.24579 * 20 3 2 48 48 H 1.09001 * 109.47052 * 60.00653 * 22 21 20 49 49 H 0.96702 * 114.00089 * 300.00080 * 23 22 21 50 50 H 1.48503 * 109.99670 * 58.68357 * 24 22 21 51 51 H 1.48500 * 110.00255 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1064 0.0000 4 6 1.8739 2.5157 -0.0005 5 8 0.8684 2.8442 0.5996 6 7 2.5940 3.4404 -0.6660 7 6 3.8562 3.0638 -1.3071 8 6 2.1143 4.8223 -0.7483 9 6 2.6589 5.6226 0.4365 10 1 2.5935 5.0811 1.3802 11 6 4.0417 6.2434 0.1771 12 6 3.5338 7.4909 0.9190 13 1 3.7075 7.4602 1.9947 14 8 3.9503 8.7219 0.3246 15 6 4.8680 9.4717 1.1231 16 6 6.1284 8.6396 1.3685 17 6 5.2439 10.7621 0.3921 18 6 4.2151 9.8158 2.4632 19 6 2.1151 7.0591 0.5116 20 6 3.6849 0.5992 0.0066 21 6 3.5859 -0.7390 0.0040 22 6 4.7459 -1.7009 0.0081 23 8 5.5483 -1.4846 -1.1543 24 14 4.1028 -3.4494 0.0014 25 8 2.2889 -1.0840 -0.0035 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 4.6626 3.1065 -0.5748 30 1 3.7758 2.0504 -1.7002 31 1 4.0695 3.7543 -2.1231 32 1 1.0247 4.8309 -0.7224 33 1 2.4592 5.2717 -1.6795 34 1 4.2509 6.4181 -0.8783 35 1 4.8552 5.7310 0.6907 36 1 6.5935 8.3945 0.4137 37 1 6.8282 9.2113 1.9780 38 1 5.8609 7.7200 1.8891 39 1 4.3462 11.3550 0.2168 40 1 5.9442 11.3339 1.0009 41 1 5.7093 10.5166 -0.5626 42 1 3.9476 8.8961 2.9839 43 1 4.9152 10.3873 3.0725 44 1 3.3171 10.4085 2.2884 45 1 1.3724 7.2044 1.2960 46 1 1.7977 7.4567 -0.4523 47 1 4.5928 1.1841 0.0121 48 1 5.3492 -1.5388 0.9013 49 1 5.0752 -1.6118 -1.9881 50 1 3.2529 -3.6733 -1.1956 51 1 5.2371 -4.4078 0.0061 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15093190_13308374.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:24:58 Heat of formation + Delta-G solvation = -62.946879 kcal Electronic energy + Delta-G solvation = -30357.766435 eV Core-core repulsion = 26227.093322 eV Total energy + Delta-G solvation = -4130.673113 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.197 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.78928 -41.24809 -40.40626 -38.44896 -38.14967 -36.44962 -34.28868 -33.76196 -33.15163 -30.08376 -29.19498 -28.39718 -28.33320 -27.69405 -26.57586 -25.54830 -24.49352 -23.28970 -22.03187 -20.81402 -20.58374 -19.78085 -18.72320 -18.05474 -17.78938 -17.73008 -17.19903 -16.90035 -16.81292 -16.12656 -15.91108 -15.87343 -15.81355 -15.38569 -14.67894 -14.54837 -14.51932 -14.42642 -14.19768 -14.00484 -13.89394 -13.78711 -13.54158 -13.48446 -13.37315 -13.25953 -13.06813 -12.92578 -12.86848 -12.82444 -12.79699 -12.67468 -12.19980 -12.17571 -12.02768 -11.82658 -11.37354 -11.23737 -11.16161 -10.92261 -10.63760 -10.36655 -9.80817 -9.52825 -4.93156 0.27490 0.84519 1.18570 1.42681 1.69908 1.86158 1.93285 2.05565 2.72883 3.18755 3.36398 3.48507 3.56797 3.63493 3.78487 3.79406 3.81836 3.90367 3.97701 4.09139 4.11543 4.14748 4.20459 4.31032 4.38960 4.44681 4.51796 4.55007 4.59580 4.59715 4.64242 4.67015 4.72611 4.76501 4.77437 4.80852 4.81185 4.84605 4.85975 4.90967 4.92806 5.00984 5.11412 5.12447 5.14372 5.21176 5.30797 5.32944 5.35669 5.53597 5.89407 6.25957 6.35777 6.41348 7.03897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.077 3.923 3 C -0.264 4.264 4 C 0.586 3.414 5 O -0.572 6.572 6 N -0.603 5.603 7 C 0.073 3.927 8 C 0.130 3.870 9 C -0.115 4.115 10 H 0.076 0.924 11 C -0.136 4.136 12 C 0.060 3.940 13 H 0.090 0.910 14 O -0.379 6.379 15 C 0.098 3.902 16 C -0.172 4.172 17 C -0.139 4.139 18 C -0.178 4.178 19 C -0.128 4.128 20 C -0.148 4.148 21 C -0.057 4.057 22 C -0.031 4.031 23 O -0.532 6.532 24 Si 0.768 3.232 25 O -0.171 6.171 26 H 0.099 0.901 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.058 0.942 45 H 0.069 0.931 46 H 0.093 0.907 47 H 0.174 0.826 48 H 0.155 0.845 49 H 0.391 0.609 50 H -0.293 1.293 51 H -0.282 1.282 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.693 -0.685 -0.126 2.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.024 3.976 3 C -0.268 4.268 4 C 0.376 3.624 5 O -0.454 6.454 6 N -0.333 5.333 7 C -0.069 4.069 8 C 0.008 3.992 9 C -0.135 4.135 10 H 0.095 0.905 11 C -0.174 4.174 12 C 0.002 3.998 13 H 0.108 0.892 14 O -0.299 6.299 15 C 0.059 3.941 16 C -0.229 4.229 17 C -0.196 4.196 18 C -0.235 4.235 19 C -0.166 4.166 20 C -0.167 4.167 21 C -0.105 4.105 22 C -0.141 4.141 23 O -0.340 6.340 24 Si 0.672 3.328 25 O -0.068 6.068 26 H 0.117 0.883 27 H 0.122 0.878 28 H 0.112 0.888 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.111 0.889 47 H 0.192 0.808 48 H 0.172 0.828 49 H 0.241 0.759 50 H -0.219 1.219 51 H -0.209 1.209 Dipole moment (debyes) X Y Z Total from point charges 2.479 -1.361 -0.004 2.828 hybrid contribution 0.247 0.637 -0.785 1.041 sum 2.725 -0.723 -0.789 2.928 Atomic orbital electron populations 1.20701 0.82742 1.05891 1.05117 1.23107 0.94667 0.82876 0.96961 1.21159 0.94495 0.93398 1.17760 1.17512 0.82349 0.84518 0.78009 1.90759 1.27827 1.81883 1.44890 1.47720 1.23588 1.09133 1.52901 1.22212 0.83961 1.02463 0.98265 1.21544 0.99706 0.79490 0.98451 1.22539 0.97250 0.94726 0.98957 0.90517 1.23523 0.96281 0.95580 1.02015 1.23641 0.95286 0.83501 0.97337 0.89213 1.88008 1.63051 1.33316 1.45510 1.21667 0.89035 0.92250 0.91114 1.22428 0.97674 1.00329 1.02507 1.21787 1.01977 0.94933 1.00874 1.22456 1.01757 1.02228 0.97057 1.23213 0.96175 0.94263 1.02967 1.22875 0.96243 0.93448 1.04120 1.22855 0.82896 0.95819 1.08917 1.24465 0.89920 1.06954 0.92730 1.86641 1.39207 1.91698 1.16441 0.93468 0.79034 0.72226 0.88107 1.83664 1.16738 1.34885 1.71536 0.88303 0.87845 0.88771 0.91493 0.90514 0.89153 0.91106 0.88103 0.88884 0.91159 0.92049 0.90668 0.92390 0.92368 0.89799 0.92142 0.92274 0.90377 0.92289 0.91197 0.88881 0.80843 0.82803 0.75933 1.21909 1.20862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.02 10.21 71.24 0.73 0.71 16 2 C 0.08 0.29 7.37 25.26 0.19 0.48 16 3 C -0.26 -1.30 5.54 -18.99 -0.11 -1.41 16 4 C 0.59 4.49 7.49 86.65 0.65 5.14 16 5 O -0.57 -8.04 15.07 -4.07 -0.06 -8.10 16 6 N -0.60 -1.29 2.87 -850.72 -2.44 -3.73 16 7 C 0.07 -0.27 9.07 127.77 1.16 0.89 16 8 C 0.13 0.15 5.25 86.38 0.45 0.60 16 9 C -0.12 -0.14 3.96 -10.27 -0.04 -0.18 16 10 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 11 C -0.14 0.10 7.47 31.12 0.23 0.33 16 12 C 0.06 0.09 2.82 31.12 0.09 0.18 16 13 H 0.09 0.08 5.54 -2.39 -0.01 0.07 16 14 O -0.38 -1.64 10.00 -148.98 -1.49 -3.13 16 15 C 0.10 0.10 1.11 -10.80 -0.01 0.09 16 16 C -0.17 0.17 8.38 71.98 0.60 0.78 16 17 C -0.14 0.02 8.84 71.98 0.64 0.66 16 18 C -0.18 0.04 8.38 71.98 0.60 0.64 16 19 C -0.13 -0.20 7.47 31.12 0.23 0.03 16 20 C -0.15 -0.12 8.64 23.65 0.20 0.08 16 21 C -0.06 -0.01 6.20 24.76 0.15 0.15 16 22 C -0.03 0.10 2.98 71.23 0.21 0.31 16 23 O -0.53 0.97 12.86 -148.98 -1.92 -0.94 16 24 Si 0.77 -1.99 32.08 68.60 2.20 0.21 16 25 O -0.17 -0.40 8.89 4.45 0.04 -0.36 16 26 H 0.10 -0.23 8.14 -2.38 -0.02 -0.25 16 27 H 0.10 -0.38 8.14 -2.39 -0.02 -0.40 16 28 H 0.09 0.37 6.55 -2.39 -0.02 0.35 16 29 H 0.07 -0.35 7.37 -2.38 -0.02 -0.37 16 30 H 0.08 -0.26 5.81 -2.39 -0.01 -0.27 16 31 H 0.09 -0.62 7.83 -2.39 -0.02 -0.64 16 32 H 0.07 0.34 7.49 -2.39 -0.02 0.32 16 33 H 0.10 -0.29 7.56 -2.39 -0.02 -0.31 16 34 H 0.09 -0.11 7.90 -2.38 -0.02 -0.12 16 35 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 36 H 0.06 -0.02 8.14 -2.39 -0.02 -0.03 16 37 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H 0.06 -0.06 7.02 -2.38 -0.02 -0.07 16 39 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.08 -0.26 8.14 -2.39 -0.02 -0.27 16 41 H 0.06 0.03 8.14 -2.38 -0.02 0.01 16 42 H 0.06 -0.02 6.24 -2.38 -0.01 -0.03 16 43 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 44 H 0.06 0.07 8.14 -2.38 -0.02 0.05 16 45 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 46 H 0.09 0.14 8.10 -2.39 -0.02 0.12 16 47 H 0.17 -0.44 6.39 -2.91 -0.02 -0.46 16 48 H 0.15 -1.02 7.96 -2.39 -0.02 -1.04 16 49 H 0.39 -2.70 8.70 -74.06 -0.64 -3.34 16 50 H -0.29 -1.02 7.11 99.48 0.71 -0.31 16 51 H -0.28 -0.85 7.11 99.48 0.71 -0.14 16 Total: 0.00 -16.36 405.34 2.63 -13.73 By element: Atomic # 1 Polarization: -7.46 SS G_CDS: 0.31 Total: -7.15 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 5.98 Total: 9.47 kcal Atomic # 7 Polarization: -1.29 SS G_CDS: -2.44 Total: -3.73 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -3.43 Total: -12.54 kcal Atomic # 14 Polarization: -1.99 SS G_CDS: 2.20 Total: 0.21 kcal Total: -16.36 2.63 -13.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15093190_13308374.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.213 kcal (2) G-P(sol) polarization free energy of solvation -16.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds