Wall clock time and date at job start Sun Mar 7 2021 05:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37874 * 126.45427 * 2 1 4 4 C 1.46674 * 126.23360 * 0.02562 * 3 2 1 5 5 O 1.21693 * 120.00324 * 333.77070 * 4 3 2 6 6 N 1.34782 * 119.99866 * 153.76640 * 4 3 2 7 7 C 1.46501 * 120.00116 * 4.89384 * 6 4 3 8 8 C 1.46501 * 119.99709 * 184.89251 * 6 4 3 9 9 C 1.52999 * 109.47232 * 90.00131 * 8 6 4 10 10 H 1.08999 * 112.84931 * 316.19524 * 9 8 6 11 11 C 1.53781 * 113.61251 * 87.50000 * 9 8 6 12 12 C 1.53781 * 87.07975 * 139.97988 * 11 9 8 13 13 H 1.09006 * 113.61602 * 89.11484 * 12 11 9 14 14 O 1.42903 * 113.69292 * 220.00348 * 12 11 9 15 15 C 1.42901 * 114.00145 * 247.53814 * 14 12 11 16 16 C 1.53002 * 109.47215 * 60.00036 * 15 14 12 17 17 C 1.52997 * 109.46746 * 180.02562 * 15 14 12 18 18 C 1.53005 * 109.46798 * 299.99832 * 15 14 12 19 19 C 1.53780 * 87.08269 * 334.56650 * 12 11 9 20 20 N 1.37659 * 107.53295 * 179.79520 * 3 2 1 21 21 C 1.35533 * 108.64228 * 0.36609 * 20 3 2 22 22 C 1.50698 * 125.56501 * 179.89349 * 21 20 3 23 23 O 1.42900 * 109.47016 * 299.72211 * 22 21 20 24 24 Si 1.86299 * 109.47274 * 179.71769 * 22 21 20 25 25 C 1.35457 * 108.87210 * 359.62787 * 21 20 3 26 26 H 1.08996 * 109.47744 * 269.99779 * 1 2 3 27 27 H 1.09000 * 109.47177 * 30.00210 * 1 2 3 28 28 H 1.09008 * 109.46951 * 150.00294 * 1 2 3 29 29 H 1.08994 * 109.47106 * 95.65010 * 7 6 4 30 30 H 1.09000 * 109.47144 * 215.65145 * 7 6 4 31 31 H 1.09004 * 109.46839 * 335.64880 * 7 6 4 32 32 H 1.09006 * 109.46898 * 210.00225 * 8 6 4 33 33 H 1.09000 * 109.47194 * 329.99799 * 8 6 4 34 34 H 1.08998 * 113.61446 * 254.52972 * 11 9 8 35 35 H 1.09003 * 113.61939 * 25.43371 * 11 9 8 36 36 H 1.08995 * 109.46707 * 59.99623 * 16 15 14 37 37 H 1.08997 * 109.46834 * 179.97438 * 16 15 14 38 38 H 1.09000 * 109.46444 * 299.99948 * 16 15 14 39 39 H 1.09002 * 109.47661 * 59.99978 * 17 15 14 40 40 H 1.09007 * 109.46958 * 179.97438 * 17 15 14 41 41 H 1.09003 * 109.47361 * 299.99769 * 17 15 14 42 42 H 1.08998 * 109.46903 * 60.00384 * 18 15 14 43 43 H 1.09007 * 109.46845 * 180.02562 * 18 15 14 44 44 H 1.09002 * 109.47363 * 299.99871 * 18 15 14 45 45 H 1.08994 * 113.61346 * 270.88322 * 19 12 11 46 46 H 1.09004 * 113.61570 * 139.97889 * 19 12 11 47 47 H 0.97001 * 125.67693 * 180.24485 * 20 3 2 48 48 H 1.09004 * 109.46792 * 59.71772 * 22 21 20 49 49 H 0.96704 * 113.99651 * 299.99639 * 23 22 21 50 50 H 1.48492 * 109.99784 * 58.68142 * 24 22 21 51 51 H 1.48500 * 109.99895 * 179.97438 * 24 22 21 52 52 H 1.07994 * 126.06840 * 180.26210 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3262 1.1090 0.0000 4 6 1.8897 2.5093 0.0005 5 8 0.8059 2.8090 -0.4648 6 7 2.6890 3.4641 0.5165 7 6 4.0361 3.1207 0.9786 8 6 2.2105 4.8452 0.6151 9 6 1.5223 5.0514 1.9659 10 1 0.8606 4.2277 2.2339 11 6 2.4860 5.4611 3.0920 12 6 1.3901 6.4276 3.5712 13 1 0.6926 5.9803 4.2795 14 8 1.8911 7.6922 4.0094 15 6 1.7395 7.9234 5.4114 16 6 2.4938 6.8443 6.1908 17 6 2.3066 9.2995 5.7656 18 6 0.2550 7.8741 5.7787 19 6 0.8751 6.4376 2.1223 20 7 3.6284 0.6626 0.0047 21 6 3.6218 -0.6927 -0.0007 22 6 4.8434 -1.5752 -0.0003 23 8 5.6242 -1.3080 -1.1669 24 14 4.3183 -3.3626 -0.0003 25 6 2.3379 -1.1246 -0.0004 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8901 -0.5138 29 1 4.7556 3.3268 0.1862 30 1 4.2820 3.7175 1.8569 31 1 4.0729 2.0623 1.2366 32 1 3.0549 5.5292 0.5293 33 1 1.5005 5.0420 -0.1882 34 1 2.6994 4.6584 3.7978 35 1 3.3857 5.9632 2.7358 36 1 3.5513 6.8794 5.9290 37 1 2.3785 7.0209 7.2602 38 1 2.0893 5.8641 5.9383 39 1 1.7688 10.0681 5.2103 40 1 2.1905 9.4761 6.8350 41 1 3.3641 9.3351 5.5038 42 1 -0.1494 6.8939 5.5263 43 1 0.1392 8.0509 6.8481 44 1 -0.2825 8.6429 5.2234 45 1 1.3342 7.2064 1.5010 46 1 -0.2121 6.4230 2.0452 47 1 4.4190 1.2245 0.0091 48 1 5.4386 -1.3713 0.8898 49 1 5.1568 -1.4681 -1.9982 50 1 3.4795 -3.6455 -1.1926 51 1 5.5140 -4.2432 -0.0007 52 1 2.0137 -2.1548 0.0001 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15093190_13940406.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:25:31 Heat of formation + Delta-G solvation = -27.660305 kcal Electronic energy + Delta-G solvation = -30333.166541 eV Core-core repulsion = 26301.742231 eV Total energy + Delta-G solvation = -4031.424310 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.209 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.79218 -41.13318 -40.23857 -38.46569 -37.85213 -36.62338 -33.93550 -33.55646 -31.96502 -29.72407 -28.60476 -28.37518 -28.33202 -27.72504 -26.59558 -26.16705 -23.97158 -22.01848 -21.66995 -20.80650 -20.60879 -20.13107 -18.88700 -18.14025 -17.82512 -17.32254 -17.06144 -16.59750 -16.50901 -16.16098 -15.90720 -15.67641 -15.46069 -14.96904 -14.71850 -14.57555 -14.52034 -14.31681 -14.17015 -13.86462 -13.74688 -13.62089 -13.52477 -13.48634 -13.37807 -13.25830 -13.06591 -12.96462 -12.86337 -12.79710 -12.67572 -12.28512 -12.19543 -12.06393 -11.87039 -11.82774 -11.38689 -11.24086 -11.16279 -10.81838 -10.37377 -9.89069 -9.79017 -9.17952 -4.84379 0.33332 1.20546 1.51867 1.68908 1.77103 1.89638 2.06966 2.35683 2.72332 3.33627 3.42939 3.52991 3.57497 3.60530 3.77477 3.80134 3.89690 3.95274 3.97594 4.09118 4.11589 4.13430 4.21404 4.26640 4.37792 4.49192 4.57872 4.60086 4.63011 4.64711 4.70363 4.71070 4.77179 4.78860 4.80305 4.80602 4.84805 4.87831 4.90802 4.92724 4.99572 5.08799 5.12366 5.15719 5.28984 5.31246 5.32473 5.34199 5.45891 5.64316 5.84430 6.17984 6.34007 6.38061 6.41137 6.96474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.090 4.090 3 C -0.066 4.066 4 C 0.583 3.417 5 O -0.563 6.563 6 N -0.607 5.607 7 C 0.048 3.952 8 C 0.129 3.871 9 C -0.115 4.115 10 H 0.079 0.921 11 C -0.137 4.137 12 C 0.060 3.940 13 H 0.092 0.908 14 O -0.380 6.380 15 C 0.098 3.902 16 C -0.172 4.172 17 C -0.139 4.139 18 C -0.178 4.178 19 C -0.129 4.129 20 N -0.518 5.518 21 C 0.028 3.972 22 C -0.063 4.063 23 O -0.549 6.549 24 Si 0.795 3.205 25 C -0.203 4.203 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.057 0.943 45 H 0.091 0.909 46 H 0.070 0.930 47 H 0.429 0.571 48 H 0.138 0.862 49 H 0.389 0.611 50 H -0.286 1.286 51 H -0.297 1.297 52 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.116 -1.447 5.374 6.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 C -0.179 4.179 4 C 0.373 3.627 5 O -0.442 6.442 6 N -0.339 5.339 7 C -0.094 4.094 8 C 0.007 3.993 9 C -0.135 4.135 10 H 0.098 0.902 11 C -0.175 4.175 12 C 0.003 3.997 13 H 0.109 0.891 14 O -0.299 6.299 15 C 0.059 3.941 16 C -0.229 4.229 17 C -0.196 4.196 18 C -0.235 4.235 19 C -0.167 4.167 20 N -0.121 5.121 21 C -0.091 4.091 22 C -0.171 4.171 23 O -0.357 6.357 24 Si 0.698 3.302 25 C -0.227 4.227 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.110 0.890 46 H 0.088 0.912 47 H 0.275 0.725 48 H 0.155 0.845 49 H 0.239 0.761 50 H -0.212 1.212 51 H -0.225 1.225 52 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.267 -1.559 5.032 6.199 hybrid contribution 0.270 0.731 -1.087 1.338 sum 3.536 -0.828 3.945 5.362 Atomic orbital electron populations 1.20359 0.89250 1.03003 1.02506 1.20126 0.96239 0.91187 1.02327 1.20083 0.84559 0.93085 1.20177 1.17393 0.84070 0.83811 0.77425 1.90803 1.23515 1.81960 1.47882 1.47804 1.15941 1.08752 1.61402 1.22485 0.81918 1.03078 1.01919 1.21518 0.99777 0.81077 0.96941 1.22550 0.98413 0.97155 0.95364 0.90241 1.23542 0.97990 0.98483 0.97453 1.23639 0.96247 0.84744 0.95089 0.89077 1.88010 1.81822 1.36244 1.23860 1.21671 0.94889 0.96381 0.81115 1.22422 1.00898 0.98443 1.01151 1.21790 1.01298 0.94215 1.02301 1.22461 0.95762 1.02327 1.02973 1.23219 1.00844 0.96542 0.96114 1.42699 1.06948 1.06803 1.55615 1.21285 0.97056 0.83595 1.07147 1.25092 0.91425 1.09003 0.91588 1.86570 1.42745 1.89642 1.16752 0.93349 0.78865 0.70224 0.87731 1.20812 0.90841 0.99442 1.11628 0.90930 0.92265 0.90197 0.90433 0.88518 0.89862 0.88087 0.91084 0.90908 0.88839 0.92043 0.90674 0.92280 0.92431 0.89795 0.92144 0.92188 0.90378 0.92360 0.88998 0.91150 0.72540 0.84479 0.76143 1.21183 1.22481 0.81635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.46 10.11 71.23 0.72 0.26 16 2 C -0.09 -0.47 6.20 -19.57 -0.12 -0.59 16 3 C -0.07 -0.33 6.42 40.35 0.26 -0.07 16 4 C 0.58 4.47 7.55 86.45 0.65 5.12 16 5 O -0.56 -8.48 14.67 -4.32 -0.06 -8.54 16 6 N -0.61 -0.66 2.87 -851.49 -2.45 -3.10 16 7 C 0.05 -0.30 9.20 127.77 1.18 0.88 16 8 C 0.13 0.08 5.31 86.38 0.46 0.54 16 9 C -0.12 -0.02 3.96 -10.27 -0.04 -0.06 16 10 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 11 C -0.14 0.27 6.99 31.12 0.22 0.49 16 12 C 0.06 0.04 2.82 31.12 0.09 0.12 16 13 H 0.09 -0.01 5.54 -2.38 -0.01 -0.02 16 14 O -0.38 -1.40 10.00 -148.98 -1.49 -2.89 16 15 C 0.10 0.04 1.11 -10.79 -0.01 0.03 16 16 C -0.17 0.31 8.39 71.98 0.60 0.92 16 17 C -0.14 0.08 8.84 71.98 0.64 0.72 16 18 C -0.18 0.14 8.38 71.98 0.60 0.74 16 19 C -0.13 -0.12 7.47 31.12 0.23 0.11 16 20 N -0.52 0.42 4.78 -171.93 -0.82 -0.40 16 21 C 0.03 -0.04 6.47 41.34 0.27 0.23 16 22 C -0.06 0.28 3.08 71.24 0.22 0.50 16 23 O -0.55 0.78 12.88 -148.98 -1.92 -1.14 16 24 Si 0.79 -3.75 30.54 68.60 2.10 -1.65 16 25 C -0.20 -0.10 9.27 22.01 0.20 0.10 16 26 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 27 H 0.06 0.58 6.38 -2.39 -0.02 0.57 16 28 H 0.08 0.13 8.14 -2.38 -0.02 0.11 16 29 H 0.08 -0.69 8.05 -2.39 -0.02 -0.71 16 30 H 0.10 -0.83 7.63 -2.39 -0.02 -0.85 16 31 H 0.08 -0.54 4.56 -2.38 -0.01 -0.55 16 32 H 0.10 -0.34 7.77 -2.38 -0.02 -0.36 16 33 H 0.07 0.36 7.36 -2.39 -0.02 0.34 16 34 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 35 H 0.09 -0.22 7.90 -2.39 -0.02 -0.24 16 36 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 37 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 38 H 0.06 -0.12 7.02 -2.39 -0.02 -0.13 16 39 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.08 -0.29 8.14 -2.38 -0.02 -0.31 16 41 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 42 H 0.06 -0.06 6.24 -2.39 -0.01 -0.07 16 43 H 0.08 -0.23 8.14 -2.38 -0.02 -0.25 16 44 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 45 H 0.09 0.11 8.10 -2.39 -0.02 0.09 16 46 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 47 H 0.43 -2.13 6.03 -92.71 -0.56 -2.69 16 48 H 0.14 -1.06 7.96 -2.38 -0.02 -1.08 16 49 H 0.39 -2.17 8.70 -74.05 -0.64 -2.81 16 50 H -0.29 -0.13 7.11 99.48 0.71 0.58 16 51 H -0.30 -0.71 7.11 99.48 0.71 -0.01 16 52 H 0.17 -0.62 6.17 -2.91 -0.02 -0.64 16 Total: 0.00 -18.00 404.63 1.28 -16.72 By element: Atomic # 1 Polarization: -8.78 SS G_CDS: -0.24 Total: -9.02 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 6.16 Total: 10.03 kcal Atomic # 7 Polarization: -0.24 SS G_CDS: -3.27 Total: -3.51 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -3.47 Total: -12.57 kcal Atomic # 14 Polarization: -3.75 SS G_CDS: 2.10 Total: -1.65 kcal Total: -18.00 1.28 -16.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15093190_13940406.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.940 kcal (2) G-P(sol) polarization free energy of solvation -17.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds