Wall clock time and date at job start Sun Mar 7 2021 05:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 120.00100 * 2 1 4 4 C 1.53006 * 109.47360 * 270.00331 * 3 2 1 5 5 H 1.08996 * 112.84485 * 314.66546 * 4 3 2 6 6 C 1.53782 * 113.61491 * 85.85711 * 4 3 2 7 7 C 1.53962 * 87.01645 * 139.95340 * 6 4 3 8 8 H 1.08998 * 113.53386 * 89.18639 * 7 6 4 9 9 O 1.42891 * 113.74234 * 220.05602 * 7 6 4 10 10 C 1.42898 * 114.00226 * 247.59645 * 9 7 6 11 11 C 1.52999 * 109.46860 * 60.00225 * 10 9 7 12 12 C 1.53001 * 109.47328 * 179.97438 * 10 9 7 13 13 C 1.52998 * 109.47423 * 300.00306 * 10 9 7 14 14 C 1.53771 * 113.61599 * 183.46963 * 4 3 2 15 15 C 1.34776 * 120.00119 * 180.02562 * 2 1 3 16 16 O 1.21275 * 120.00076 * 180.02562 * 15 2 1 17 17 C 1.50697 * 119.99972 * 359.97438 * 15 2 1 18 18 C 1.50699 * 109.47455 * 180.02562 * 17 15 2 19 19 C 1.34854 * 125.89246 * 85.01899 * 18 17 15 20 20 C 1.40884 * 107.41513 * 179.74330 * 19 18 17 21 21 C 1.34850 * 107.42192 * 359.97438 * 20 19 18 22 22 C 1.50694 * 125.89320 * 180.02562 * 21 20 19 23 23 O 1.42901 * 109.47167 * 244.97723 * 22 21 20 24 24 Si 1.86306 * 109.47262 * 4.97239 * 22 21 20 25 25 N 1.36338 * 108.21433 * 359.97438 * 21 20 19 26 26 H 1.08996 * 109.46931 * 269.99893 * 1 2 3 27 27 H 1.08999 * 109.47248 * 29.99938 * 1 2 3 28 28 H 1.09001 * 109.46997 * 149.99688 * 1 2 3 29 29 H 1.09004 * 109.46815 * 29.99918 * 3 2 1 30 30 H 1.08997 * 109.47515 * 150.00137 * 3 2 1 31 31 H 1.08992 * 113.61331 * 254.53011 * 6 4 3 32 32 H 1.08997 * 113.61038 * 25.44047 * 6 4 3 33 33 H 1.09009 * 109.47189 * 60.00210 * 11 10 9 34 34 H 1.09000 * 109.47347 * 179.97438 * 11 10 9 35 35 H 1.08999 * 109.47786 * 300.00143 * 11 10 9 36 36 H 1.09000 * 109.46769 * 60.00308 * 12 10 9 37 37 H 1.09002 * 109.46731 * 180.02562 * 12 10 9 38 38 H 1.08995 * 109.47412 * 300.00271 * 12 10 9 39 39 H 1.09003 * 109.46473 * 59.99749 * 13 10 9 40 40 H 1.09002 * 109.47468 * 179.97438 * 13 10 9 41 41 H 1.09000 * 109.47148 * 299.99982 * 13 10 9 42 42 H 1.09003 * 113.61659 * 334.56823 * 14 4 3 43 43 H 1.09001 * 113.61784 * 105.46571 * 14 4 3 44 44 H 1.08996 * 109.47786 * 59.99635 * 17 15 2 45 45 H 1.09004 * 109.46868 * 299.99841 * 17 15 2 46 46 H 1.07998 * 126.29032 * 359.76354 * 19 18 17 47 47 H 1.08004 * 126.28899 * 179.97438 * 20 19 18 48 48 H 1.09003 * 109.47233 * 124.97229 * 22 21 20 49 49 H 0.96695 * 113.99971 * 59.99689 * 23 22 21 50 50 H 1.48497 * 110.00366 * 179.97438 * 24 22 21 51 51 H 1.48494 * 109.99864 * 301.32526 * 24 22 21 52 52 H 0.97003 * 125.63151 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 2.8088 0.8990 -2.0769 6 6 1.2901 2.5080 -2.0572 7 6 2.3570 3.4118 -2.7016 8 1 2.6864 3.0658 -3.6814 9 8 2.0192 4.8001 -2.6881 10 6 1.7666 5.3495 -3.9828 11 6 0.5975 4.6068 -4.6327 12 6 1.4161 6.8328 -3.8480 13 6 3.0151 5.1971 -4.8540 14 6 3.2920 2.9940 -1.5545 15 6 2.1389 -1.1672 -0.0005 16 8 3.3517 -1.1672 -0.0001 17 6 1.3854 -2.4723 -0.0005 18 6 2.3647 -3.6177 -0.0005 19 6 2.9505 -4.1570 1.0878 20 6 3.7847 -5.2018 0.6435 21 6 3.6766 -5.2616 -0.6993 22 6 4.3937 -6.2329 -1.6010 23 8 5.2950 -5.5189 -2.4495 24 14 5.3494 -7.4519 -0.5658 25 7 2.8056 -4.2923 -1.1002 26 1 -0.3633 0.0000 1.0276 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1384 0.5138 31 1 0.7042 1.9393 -2.7793 32 1 0.6729 3.0195 -1.3186 33 1 -0.2921 4.7155 -4.0120 34 1 0.4044 5.0262 -5.6201 35 1 0.8466 3.5501 -4.7288 36 1 2.2488 7.3621 -3.3848 37 1 1.2230 7.2516 -4.8356 38 1 0.5266 6.9410 -3.2275 39 1 3.2642 4.1403 -4.9500 40 1 2.8222 5.6158 -5.8418 41 1 3.8480 5.7262 -4.3911 42 1 3.2231 3.6386 -0.6782 43 1 4.3199 2.8172 -1.8713 44 1 0.7584 -2.5299 -0.8902 45 1 0.7591 -2.5302 0.8898 46 1 2.8064 -3.8455 2.1118 47 1 4.3982 -5.8380 1.2644 48 1 3.6657 -6.7671 -2.2117 49 1 5.9717 -5.0194 -1.9726 50 1 6.0607 -8.4158 -1.4433 51 1 6.3232 -6.7336 0.2949 52 1 2.5435 -4.1120 -2.0166 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15093190_14644196.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:25:34 Heat of formation + Delta-G solvation = -41.473023 kcal Electronic energy + Delta-G solvation = -29774.375615 eV Core-core repulsion = 25742.352341 eV Total energy + Delta-G solvation = -4032.023274 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.209 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.36197 -41.23939 -40.41833 -38.47182 -37.86479 -36.31466 -33.93291 -33.16913 -31.94234 -30.25871 -28.95866 -28.41345 -28.31887 -27.18920 -26.57532 -25.21357 -23.70835 -21.50062 -21.32701 -20.91347 -20.62885 -20.14702 -18.96481 -18.09134 -17.82293 -17.35611 -17.01590 -16.70826 -16.36086 -16.31680 -15.91522 -15.73484 -15.30552 -14.79242 -14.68951 -14.63470 -14.54908 -14.18010 -14.11538 -13.99339 -13.85754 -13.58347 -13.51416 -13.44652 -13.37873 -13.25674 -13.15312 -12.90696 -12.81281 -12.74560 -12.68477 -12.22250 -12.19533 -12.05208 -11.86207 -11.81453 -11.39286 -11.25186 -10.90659 -10.83226 -10.38430 -9.81080 -9.65546 -8.97944 -4.88783 1.07812 1.28857 1.59278 1.66783 1.81059 1.93112 2.17380 2.47360 2.70931 3.36534 3.48069 3.57086 3.63322 3.76605 3.77079 3.80279 3.85032 3.89161 3.95711 4.07610 4.11717 4.15762 4.27917 4.35357 4.41427 4.48664 4.56286 4.57586 4.59123 4.63703 4.65917 4.75230 4.76225 4.78130 4.78835 4.81163 4.85468 4.89333 4.91297 4.95633 5.00790 5.10519 5.12899 5.24396 5.27775 5.29130 5.30963 5.34348 5.56010 5.97401 6.11736 6.34736 6.36833 6.39378 6.65464 7.15974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.612 5.612 3 C 0.129 3.871 4 C -0.113 4.113 5 H 0.074 0.926 6 C -0.134 4.134 7 C 0.060 3.940 8 H 0.089 0.911 9 O -0.379 6.379 10 C 0.098 3.902 11 C -0.171 4.171 12 C -0.139 4.139 13 C -0.178 4.178 14 C -0.132 4.132 15 C 0.506 3.494 16 O -0.578 6.578 17 C -0.065 4.065 18 C 0.035 3.965 19 C -0.200 4.200 20 C -0.202 4.202 21 C -0.017 4.017 22 C -0.063 4.063 23 O -0.554 6.554 24 Si 0.799 3.201 25 N -0.536 5.536 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.127 0.873 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.149 0.851 48 H 0.128 0.872 49 H 0.385 0.615 50 H -0.296 1.296 51 H -0.291 1.291 52 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.243 0.324 -0.624 8.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.344 5.344 3 C 0.006 3.994 4 C -0.133 4.133 5 H 0.093 0.907 6 C -0.171 4.171 7 C 0.002 3.998 8 H 0.107 0.893 9 O -0.299 6.299 10 C 0.059 3.941 11 C -0.229 4.229 12 C -0.196 4.196 13 C -0.235 4.235 14 C -0.170 4.170 15 C 0.295 3.705 16 O -0.457 6.457 17 C -0.105 4.105 18 C -0.079 4.079 19 C -0.225 4.225 20 C -0.227 4.227 21 C -0.130 4.130 22 C -0.171 4.171 23 O -0.362 6.362 24 Si 0.703 3.297 25 N -0.132 5.132 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.111 0.889 29 H 0.116 0.884 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.110 0.890 43 H 0.083 0.917 44 H 0.145 0.855 45 H 0.159 0.841 46 H 0.157 0.843 47 H 0.167 0.833 48 H 0.145 0.855 49 H 0.234 0.766 50 H -0.224 1.224 51 H -0.218 1.218 52 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -7.289 -0.105 -0.876 7.342 hybrid contribution 0.945 1.140 -0.953 1.761 sum -6.343 1.035 -1.829 6.682 Atomic orbital electron populations 1.22159 0.76877 1.04996 1.03531 1.47946 1.08486 1.05092 1.72873 1.21403 0.97339 0.85072 0.95596 1.22515 0.97855 0.95889 0.97049 0.90726 1.23542 0.96414 0.96710 1.00438 1.23675 0.96360 0.81452 0.98318 0.89325 1.88008 1.89096 1.23829 1.28941 1.21674 0.94391 0.94773 0.83243 1.22420 0.98268 1.00528 1.01651 1.21787 1.02044 0.92606 1.03141 1.22461 0.97961 1.02263 1.00854 1.23228 0.98246 0.96174 0.99368 1.21089 0.87688 0.86311 0.75425 1.90738 1.16153 1.87866 1.50959 1.20288 0.95906 0.86264 1.08024 1.19919 1.03188 0.98226 0.86595 1.20829 1.02751 1.00408 0.98480 1.20905 1.05515 1.02859 0.93386 1.20895 1.00029 0.97250 0.94843 1.25008 0.95989 0.97773 0.98313 1.86533 1.45878 1.67105 1.36697 0.93407 0.80869 0.77579 0.77836 1.41880 1.35357 1.27029 1.08908 0.90895 0.89853 0.88935 0.88404 0.92058 0.90700 0.88728 0.91878 0.90700 0.92334 0.92479 0.89791 0.92024 0.92344 0.90353 0.92430 0.89031 0.91669 0.85488 0.84086 0.84293 0.83350 0.85472 0.76559 1.22367 1.21826 0.74406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.64 10.24 127.77 1.31 0.67 16 2 N -0.61 1.10 2.87 -846.76 -2.43 -1.33 16 3 C 0.13 0.02 5.23 86.38 0.45 0.48 16 4 C -0.11 -0.03 3.96 -10.27 -0.04 -0.07 16 5 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 6 C -0.13 0.31 6.96 31.18 0.22 0.52 16 7 C 0.06 0.05 2.82 31.18 0.09 0.14 16 8 H 0.09 0.04 5.54 -2.39 -0.01 0.03 16 9 O -0.38 -1.48 10.00 -148.98 -1.49 -2.97 16 10 C 0.10 0.05 1.11 -10.79 -0.01 0.04 16 11 C -0.17 0.33 8.38 71.98 0.60 0.93 16 12 C -0.14 0.07 8.84 71.98 0.64 0.71 16 13 C -0.18 0.06 8.38 71.98 0.60 0.66 16 14 C -0.13 -0.22 7.47 31.12 0.23 0.01 16 15 C 0.51 1.65 7.67 87.66 0.67 2.32 16 16 O -0.58 -8.02 15.61 -3.01 -0.05 -8.06 16 17 C -0.06 0.22 4.79 29.10 0.14 0.36 16 18 C 0.03 0.11 5.66 41.08 0.23 0.35 16 19 C -0.20 -1.18 10.77 22.14 0.24 -0.94 16 20 C -0.20 -1.07 9.37 22.14 0.21 -0.87 16 21 C -0.02 -0.07 6.50 41.08 0.27 0.20 16 22 C -0.06 -0.11 3.08 71.23 0.22 0.11 16 23 O -0.55 -3.03 12.88 -148.98 -1.92 -4.95 16 24 Si 0.80 0.16 30.60 68.60 2.10 2.26 16 25 N -0.54 -1.58 6.07 -171.13 -1.04 -2.62 16 26 H 0.07 -0.83 8.14 -2.39 -0.02 -0.84 16 27 H 0.08 -0.89 7.54 -2.39 -0.02 -0.91 16 28 H 0.09 -1.24 6.44 -2.39 -0.02 -1.26 16 29 H 0.10 -0.34 7.81 -2.38 -0.02 -0.36 16 30 H 0.06 0.35 7.42 -2.39 -0.02 0.33 16 31 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 32 H 0.09 -0.26 7.92 -2.39 -0.02 -0.28 16 33 H 0.06 -0.09 8.14 -2.38 -0.02 -0.11 16 34 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 35 H 0.06 -0.12 7.02 -2.39 -0.02 -0.14 16 36 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 37 H 0.08 -0.29 8.14 -2.39 -0.02 -0.30 16 38 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.06 -0.02 6.24 -2.39 -0.01 -0.04 16 40 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 41 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 42 H 0.09 0.18 8.10 -2.39 -0.02 0.16 16 43 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 44 H 0.13 -1.18 7.40 -2.39 -0.02 -1.20 16 45 H 0.14 -1.18 8.11 -2.38 -0.02 -1.20 16 46 H 0.14 0.56 8.06 -2.91 -0.02 0.54 16 47 H 0.15 0.35 6.24 -2.91 -0.02 0.33 16 48 H 0.13 -0.17 7.96 -2.39 -0.02 -0.19 16 49 H 0.39 0.76 8.70 -74.06 -0.64 0.11 16 50 H -0.30 -1.91 7.11 99.48 0.71 -1.20 16 51 H -0.29 -1.69 7.11 99.48 0.71 -0.98 16 52 H 0.42 -0.25 8.96 -92.71 -0.83 -1.08 16 Total: 0.00 -21.62 412.51 0.71 -20.91 By element: Atomic # 1 Polarization: -8.34 SS G_CDS: -0.53 Total: -8.87 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 6.06 Total: 5.62 kcal Atomic # 7 Polarization: -0.47 SS G_CDS: -3.47 Total: -3.95 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -3.46 Total: -15.98 kcal Atomic # 14 Polarization: 0.16 SS G_CDS: 2.10 Total: 2.26 kcal Total: -21.62 0.71 -20.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15093190_14644196.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.561 kcal (2) G-P(sol) polarization free energy of solvation -21.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds