Wall clock time and date at job start Sun Mar 7 2021 05:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00136 * 2 1 4 4 C 1.52998 * 109.47420 * 270.00140 * 3 2 1 5 5 H 1.09001 * 112.85066 * 43.80162 * 4 3 2 6 6 C 1.53774 * 113.61655 * 174.99979 * 4 3 2 7 7 C 1.53785 * 87.08123 * 139.98178 * 6 4 3 8 8 H 1.08998 * 113.61714 * 89.20091 * 7 6 4 9 9 O 1.42906 * 113.60943 * 220.01944 * 7 6 4 10 10 C 1.42906 * 113.99473 * 209.99806 * 9 7 6 11 11 C 1.52995 * 109.47124 * 60.00278 * 10 9 7 12 12 C 1.53003 * 109.46985 * 180.02562 * 10 9 7 13 13 C 1.53002 * 109.47173 * 300.00078 * 10 9 7 14 14 C 1.53776 * 87.07903 * 334.56787 * 7 6 4 15 15 C 1.34780 * 119.99802 * 180.02562 * 2 1 3 16 16 O 1.21280 * 119.99750 * 179.97438 * 15 2 1 17 17 C 1.50697 * 119.99970 * 0.02562 * 15 2 1 18 18 O 1.42902 * 109.47207 * 179.97438 * 17 15 2 19 19 C 1.35900 * 116.99943 * 180.02562 * 18 17 15 20 20 C 1.38707 * 120.05163 * 180.02562 * 19 18 17 21 21 C 1.38166 * 119.94172 * 179.97438 * 20 19 18 22 22 C 1.50701 * 119.97212 * 180.02562 * 21 20 19 23 23 O 1.42892 * 109.47330 * 64.99802 * 22 21 20 24 24 Si 1.86306 * 109.47278 * 185.00247 * 22 21 20 25 25 C 1.38244 * 120.05849 * 359.72378 * 21 20 19 26 26 C 1.38288 * 120.10735 * 0.54781 * 25 21 20 27 27 C 1.38126 * 120.05387 * 359.44975 * 26 25 21 28 28 H 1.09004 * 109.46925 * 269.99961 * 1 2 3 29 29 H 1.09007 * 109.46938 * 29.99697 * 1 2 3 30 30 H 1.09001 * 109.47292 * 149.99825 * 1 2 3 31 31 H 1.09000 * 109.47122 * 30.00438 * 3 2 1 32 32 H 1.08998 * 109.46939 * 149.99887 * 3 2 1 33 33 H 1.09004 * 113.61491 * 254.52704 * 6 4 3 34 34 H 1.08998 * 113.61399 * 25.34751 * 6 4 3 35 35 H 1.08998 * 109.47313 * 59.99776 * 11 10 9 36 36 H 1.09000 * 109.47158 * 179.97438 * 11 10 9 37 37 H 1.09005 * 109.47199 * 299.99568 * 11 10 9 38 38 H 1.09003 * 109.47259 * 59.99477 * 12 10 9 39 39 H 1.09000 * 109.47067 * 180.02562 * 12 10 9 40 40 H 1.08998 * 109.46772 * 299.99808 * 12 10 9 41 41 H 1.09004 * 109.47024 * 59.99870 * 13 10 9 42 42 H 1.09000 * 109.47058 * 180.02562 * 13 10 9 43 43 H 1.09003 * 109.46905 * 300.00421 * 13 10 9 44 44 H 1.09002 * 113.61707 * 270.88392 * 14 7 6 45 45 H 1.08997 * 113.61672 * 139.98456 * 14 7 6 46 46 H 1.09002 * 109.47495 * 59.99886 * 17 15 2 47 47 H 1.08998 * 109.47131 * 300.00199 * 17 15 2 48 48 H 1.08007 * 120.02994 * 359.94447 * 20 19 18 49 49 H 1.09007 * 109.47193 * 304.99864 * 22 21 20 50 50 H 0.96698 * 114.00367 * 59.99989 * 23 22 21 51 51 H 1.48497 * 110.00196 * 58.67892 * 24 22 21 52 52 H 1.48500 * 109.99890 * 180.02562 * 24 22 21 53 53 H 1.07993 * 119.94966 * 180.29953 * 25 21 20 54 54 H 1.08002 * 119.97455 * 179.73146 * 26 25 21 55 55 H 1.08000 * 120.02655 * 180.29782 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 1.5792 1.5884 -2.0832 6 6 3.1105 3.0957 -1.5553 7 6 3.9635 2.5108 -2.6934 8 1 3.5049 2.6084 -3.6774 9 8 5.3247 2.9456 -2.6701 10 6 5.9359 3.0114 -3.9601 11 6 5.1630 3.9948 -4.8412 12 6 7.3835 3.4850 -3.8150 13 6 5.9160 1.6242 -4.6053 14 6 3.7453 1.1343 -2.0438 15 6 2.1389 -1.1672 -0.0005 16 8 3.3517 -1.1672 -0.0010 17 6 1.3853 -2.4723 -0.0017 18 8 2.3139 -3.5585 -0.0027 19 6 1.7944 -4.8143 -0.0043 20 6 2.6383 -5.9151 -0.0048 21 6 2.1076 -7.1908 -0.0060 22 6 3.0238 -8.3873 -0.0059 23 8 3.7645 -8.4201 1.2156 24 14 2.0123 -9.9442 -0.1608 25 6 0.7369 -7.3706 -0.0009 26 6 -0.1065 -6.2748 -0.0061 27 6 0.4190 -4.9974 -0.0048 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 1.6085 2.0283 0.5139 32 1 3.1499 1.1383 0.5138 33 1 2.4260 3.8790 -1.8809 34 1 3.6885 3.3775 -0.6752 35 1 5.1772 4.9830 -4.3816 36 1 5.6295 4.0453 -5.8250 37 1 4.1318 3.6569 -4.9446 38 1 7.9340 2.7842 -3.1873 39 1 7.8497 3.5357 -4.7990 40 1 7.3981 4.4732 -3.3552 41 1 4.8848 1.2863 -4.7086 42 1 6.3827 1.6743 -5.5891 43 1 6.4667 0.9236 -3.9775 44 1 4.4980 0.8792 -1.2977 45 1 3.5733 0.3340 -2.7635 46 1 0.7590 -2.5295 -0.8919 47 1 0.7583 -2.5306 0.8880 48 1 3.7092 -5.7752 -0.0048 49 1 3.7135 -8.3170 -0.8472 50 1 3.2138 -8.4824 2.0080 51 1 1.2130 -9.9082 -1.4117 52 1 2.9043 -11.1314 -0.1613 53 1 0.3241 -8.3685 0.0031 54 1 -1.1770 -6.4177 -0.0064 55 1 -0.2401 -4.1418 -0.0040 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15093190_4860298.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:26:50 Heat of formation + Delta-G solvation = -87.164132 kcal Electronic energy + Delta-G solvation = -33132.519609 eV Core-core repulsion = 28717.032598 eV Total energy + Delta-G solvation = -4415.487011 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.213 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.71160 -41.11905 -40.44128 -39.07713 -38.35565 -37.24568 -36.47477 -33.92527 -32.49655 -31.85460 -30.47256 -28.75308 -28.41623 -28.32566 -27.24288 -26.74368 -26.49001 -23.90833 -23.68987 -22.36190 -21.00261 -20.60814 -20.31090 -19.39872 -18.30446 -17.85518 -17.69645 -17.54999 -17.37443 -17.03994 -16.70198 -16.59559 -16.20110 -15.95419 -15.84355 -15.53093 -15.31434 -14.88381 -14.66428 -14.63949 -14.44223 -14.20782 -14.07748 -13.97833 -13.63706 -13.52782 -13.44088 -13.35395 -13.33535 -13.10924 -12.95600 -12.92024 -12.78770 -12.73254 -12.61297 -12.27548 -12.17376 -12.07146 -12.02343 -11.78404 -11.69586 -11.40096 -11.25542 -10.91843 -10.50430 -10.39492 -9.95683 -9.73615 -9.30561 -4.99897 0.18822 0.37231 1.26459 1.41236 1.45234 1.65261 1.96524 2.44345 2.65544 2.71498 3.28536 3.50401 3.52993 3.62159 3.66709 3.75383 3.78755 3.80382 3.85790 3.92256 3.94966 3.99248 4.04705 4.10173 4.11251 4.23346 4.29635 4.31714 4.37327 4.45625 4.48296 4.54748 4.56324 4.61263 4.63457 4.71674 4.73420 4.77628 4.81846 4.84519 4.86935 4.89161 4.93546 4.96153 4.99472 5.06939 5.17442 5.22802 5.26616 5.28895 5.34778 5.35707 5.42938 5.48366 5.69043 6.16915 6.34562 6.39988 6.73721 7.02178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.607 5.607 3 C 0.127 3.873 4 C -0.113 4.113 5 H 0.111 0.889 6 C -0.120 4.120 7 C 0.057 3.943 8 H 0.100 0.900 9 O -0.385 6.385 10 C 0.097 3.903 11 C -0.173 4.173 12 C -0.139 4.139 13 C -0.172 4.172 14 C -0.142 4.142 15 C 0.505 3.495 16 O -0.566 6.566 17 C 0.042 3.958 18 O -0.325 6.325 19 C 0.112 3.888 20 C -0.152 4.152 21 C -0.085 4.085 22 C -0.088 4.088 23 O -0.558 6.558 24 Si 0.798 3.202 25 C -0.155 4.155 26 C -0.068 4.068 27 C -0.202 4.202 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.047 0.953 44 H 0.060 0.940 45 H 0.048 0.952 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.108 0.892 49 H 0.098 0.902 50 H 0.396 0.604 51 H -0.280 1.280 52 H -0.301 1.301 53 H 0.153 0.847 54 H 0.166 0.834 55 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.514 2.122 -0.185 12.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.341 5.341 3 C 0.005 3.995 4 C -0.132 4.132 5 H 0.129 0.871 6 C -0.158 4.158 7 C 0.000 4.000 8 H 0.118 0.882 9 O -0.305 6.305 10 C 0.058 3.942 11 C -0.230 4.230 12 C -0.196 4.196 13 C -0.230 4.230 14 C -0.180 4.180 15 C 0.292 3.708 16 O -0.444 6.444 17 C -0.036 4.036 18 O -0.239 6.239 19 C 0.067 3.933 20 C -0.171 4.171 21 C -0.085 4.085 22 C -0.197 4.197 23 O -0.367 6.367 24 Si 0.703 3.297 25 C -0.172 4.172 26 C -0.086 4.086 27 C -0.220 4.220 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.108 0.892 31 H 0.129 0.871 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.139 0.861 47 H 0.140 0.860 48 H 0.126 0.874 49 H 0.116 0.884 50 H 0.246 0.754 51 H -0.206 1.206 52 H -0.230 1.230 53 H 0.170 0.830 54 H 0.184 0.816 55 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -11.248 1.596 -0.882 11.395 hybrid contribution 0.946 0.402 -0.538 1.160 sum -10.303 1.997 -1.420 10.590 Atomic orbital electron populations 1.22262 0.76209 1.05533 1.03954 1.47849 1.08781 1.04639 1.72783 1.21518 0.97482 0.84477 0.96014 1.22691 0.97225 0.96182 0.97150 0.87102 1.23151 0.97620 0.96502 0.98503 1.23792 0.82627 0.94409 0.99196 0.88239 1.88025 1.25860 1.87266 1.29311 1.21690 0.94228 0.94798 0.83489 1.22413 1.00697 0.99421 1.00491 1.21794 0.93176 1.01562 1.03097 1.22434 1.02276 0.96670 1.01614 1.23419 0.98032 0.96746 0.99788 1.20585 0.87670 0.86115 0.76390 1.90760 1.16005 1.87649 1.50034 1.22760 0.91495 0.83064 1.06281 1.86130 1.36144 1.12623 1.88971 1.19225 0.93229 0.83497 0.97341 1.20297 0.99425 0.90839 1.06576 1.20215 0.95082 0.93849 0.99385 1.25468 0.99472 1.04841 0.89871 1.86481 1.37345 1.96902 1.15927 0.93543 0.79200 0.71650 0.85343 1.21223 0.91748 1.00456 1.03794 1.21365 1.01671 0.90691 0.94881 1.21627 0.92494 1.00493 1.07431 0.90489 0.88646 0.89157 0.87061 0.92394 0.88787 0.89900 0.91822 0.90318 0.91794 0.92967 0.89552 0.91937 0.92444 0.90276 0.93405 0.92088 0.93335 0.86133 0.85988 0.87428 0.88431 0.75432 1.20649 1.22985 0.82977 0.81627 0.82235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.72 10.24 127.77 1.31 0.59 16 2 N -0.61 1.17 2.87 -846.76 -2.43 -1.26 16 3 C 0.13 -0.08 5.24 86.38 0.45 0.37 16 4 C -0.11 0.08 3.96 -10.27 -0.04 0.04 16 5 H 0.11 -0.47 8.14 -2.39 -0.02 -0.49 16 6 C -0.12 0.04 7.47 31.12 0.23 0.27 16 7 C 0.06 0.21 2.82 31.12 0.09 0.29 16 8 H 0.10 0.07 5.54 -2.39 -0.01 0.06 16 9 O -0.38 -3.16 10.00 -148.98 -1.49 -4.65 16 10 C 0.10 0.39 1.11 -10.79 -0.01 0.38 16 11 C -0.17 -0.03 8.38 71.98 0.60 0.57 16 12 C -0.14 -0.43 8.84 71.98 0.64 0.21 16 13 C -0.17 -0.64 8.38 71.98 0.60 -0.03 16 14 C -0.14 -0.93 6.88 31.12 0.21 -0.71 16 15 C 0.50 2.76 7.75 87.66 0.68 3.44 16 16 O -0.57 -9.63 15.35 16.01 0.25 -9.38 16 17 C 0.04 -0.03 3.77 71.23 0.27 0.24 16 18 O -0.33 -2.94 9.67 -73.39 -0.71 -3.64 16 19 C 0.11 0.63 6.69 22.50 0.15 0.78 16 20 C -0.15 -1.22 9.62 22.36 0.22 -1.01 16 21 C -0.08 -0.26 5.35 -19.88 -0.11 -0.36 16 22 C -0.09 -0.23 2.80 71.24 0.20 -0.03 16 23 O -0.56 -2.27 12.83 -148.98 -1.91 -4.18 16 24 Si 0.80 -1.39 29.80 68.60 2.04 0.65 16 25 C -0.15 0.34 8.67 22.28 0.19 0.54 16 26 C -0.07 0.30 10.04 22.26 0.22 0.53 16 27 C -0.20 0.44 9.04 22.36 0.20 0.64 16 28 H 0.08 -1.04 8.14 -2.39 -0.02 -1.06 16 29 H 0.09 -1.36 8.07 -2.38 -0.02 -1.38 16 30 H 0.09 -1.37 6.44 -2.39 -0.02 -1.39 16 31 H 0.11 -0.70 8.07 -2.39 -0.02 -0.72 16 32 H 0.06 0.37 7.12 -2.39 -0.02 0.35 16 33 H 0.09 -0.40 8.14 -2.38 -0.02 -0.42 16 34 H 0.08 0.17 8.10 -2.39 -0.02 0.15 16 35 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 37 H 0.06 -0.06 6.24 -2.38 -0.01 -0.08 16 38 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.06 0.20 7.02 -2.38 -0.02 0.18 16 42 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 43 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.06 0.84 7.75 -2.39 -0.02 0.83 16 45 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.12 -0.86 6.92 -2.39 -0.02 -0.87 16 47 H 0.12 -0.86 7.63 -2.39 -0.02 -0.88 16 48 H 0.11 1.30 8.06 -2.91 -0.02 1.28 16 49 H 0.10 0.50 7.96 -2.38 -0.02 0.48 16 50 H 0.40 -1.91 8.70 -74.06 -0.64 -2.55 16 51 H -0.28 -0.56 7.11 99.48 0.71 0.14 16 52 H -0.30 -1.82 7.11 99.48 0.71 -1.11 16 53 H 0.15 -1.14 4.91 -2.91 -0.01 -1.16 16 54 H 0.17 -1.86 8.06 -2.91 -0.02 -1.88 16 55 H 0.16 -1.47 6.30 -2.91 -0.02 -1.49 16 Total: 0.00 -28.90 434.27 2.13 -26.77 By element: Atomic # 1 Polarization: -11.31 SS G_CDS: 0.27 Total: -11.04 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 6.11 Total: 6.74 kcal Atomic # 7 Polarization: 1.17 SS G_CDS: -2.43 Total: -1.26 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -3.87 Total: -21.86 kcal Atomic # 14 Polarization: -1.39 SS G_CDS: 2.04 Total: 0.65 kcal Total: -28.90 2.13 -26.77 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15093190_4860298.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.393 kcal (2) G-P(sol) polarization free energy of solvation -28.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds