Wall clock time and date at job start Sun Mar 7 2021 05:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35893 * 117.00186 * 2 1 4 4 C 1.38731 * 120.05980 * 180.02562 * 3 2 1 5 5 C 1.38140 * 119.94731 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.05751 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.94747 * 180.02562 * 6 5 4 8 8 H 1.09003 * 112.84899 * 11.19349 * 7 6 5 9 9 C 1.53777 * 113.69400 * 142.46268 * 7 6 5 10 10 C 1.53773 * 87.08382 * 139.99211 * 9 7 6 11 11 H 1.09006 * 113.68996 * 89.12563 * 10 9 7 12 12 N 1.46503 * 113.61724 * 220.01869 * 10 9 7 13 13 C 1.34770 * 120.00041 * 252.49778 * 12 10 9 14 14 O 1.21616 * 120.00136 * 359.97438 * 13 12 10 15 15 C 1.47303 * 119.99779 * 179.97438 * 13 12 10 16 16 C 1.40300 * 120.13403 * 180.02562 * 15 13 12 17 17 O 1.35653 * 120.11858 * 0.02562 * 16 15 13 18 18 C 1.42898 * 116.99984 * 179.97438 * 17 16 15 19 19 C 1.38439 * 119.75878 * 179.97438 * 16 15 13 20 20 C 1.38683 * 120.03317 * 359.97438 * 19 16 15 21 21 O 1.35720 * 119.86530 * 180.02562 * 20 19 16 22 22 C 1.42902 * 116.99600 * 359.97438 * 21 20 19 23 23 C 1.39189 * 120.27345 * 0.02562 * 20 19 16 24 24 C 1.50697 * 119.87912 * 180.27701 * 23 20 19 25 25 O 1.42899 * 109.47008 * 284.72391 * 24 23 20 26 26 Si 1.86297 * 109.47165 * 164.72283 * 24 23 20 27 27 C 1.37545 * 120.23893 * 359.97438 * 23 20 19 28 28 C 1.53784 * 87.08335 * 334.56884 * 10 9 7 29 29 C 1.38263 * 120.10929 * 0.27069 * 6 5 4 30 30 C 1.38148 * 120.05440 * 359.45484 * 29 6 5 31 31 H 1.08998 * 109.47420 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47000 * 299.99837 * 1 2 3 33 33 H 1.09000 * 109.47174 * 59.99806 * 1 2 3 34 34 H 1.08001 * 120.02144 * 359.95253 * 4 3 2 35 35 H 1.07999 * 119.97450 * 180.02562 * 5 4 3 36 36 H 1.09002 * 113.61325 * 25.44067 * 9 7 6 37 37 H 1.09001 * 113.61574 * 254.54198 * 9 7 6 38 38 H 0.97003 * 119.99190 * 72.50046 * 12 10 9 39 39 H 1.09005 * 109.47336 * 60.00065 * 18 17 16 40 40 H 1.09004 * 109.47577 * 180.02562 * 18 17 16 41 41 H 1.09006 * 109.47353 * 300.00196 * 18 17 16 42 42 H 1.08003 * 119.98555 * 180.02562 * 19 16 15 43 43 H 1.08994 * 109.47334 * 59.99919 * 22 21 20 44 44 H 1.09002 * 109.46726 * 179.97438 * 22 21 20 45 45 H 1.08998 * 109.47094 * 299.99778 * 22 21 20 46 46 H 1.09001 * 109.47330 * 44.72122 * 24 23 20 47 47 H 0.96694 * 114.00445 * 59.99986 * 25 24 23 48 48 H 1.48502 * 110.00272 * 178.68218 * 26 24 23 49 49 H 1.48506 * 110.00090 * 299.99768 * 26 24 23 50 50 H 1.07998 * 120.01232 * 179.97438 * 27 23 20 51 51 H 1.09000 * 113.61652 * 139.97715 * 28 10 9 52 52 H 1.08995 * 113.61436 * 270.88249 * 28 10 9 53 53 H 1.07998 * 119.97364 * 179.72675 * 29 6 5 54 54 H 1.08005 * 120.02771 * 180.26745 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5168 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 3.9861 5.0185 -0.0028 8 1 5.0562 4.9481 -0.1981 9 6 3.2714 6.0754 -0.8612 10 6 3.5952 7.0850 0.2525 11 1 4.5581 7.5806 0.1281 12 7 2.5044 8.0229 0.5297 13 6 2.6099 9.3111 0.1480 14 8 3.6109 9.6952 -0.4261 15 6 1.5129 10.2539 0.4263 16 6 1.6195 11.5955 0.0297 17 8 2.7332 12.0292 -0.6119 18 6 2.7711 13.4078 -0.9860 19 6 0.5836 12.4748 0.2947 20 6 -0.5549 12.0291 0.9494 21 8 -1.5686 12.8939 1.2070 22 6 -1.3937 14.2452 0.7762 23 6 -0.6621 10.6984 1.3434 24 6 -1.9058 10.2222 2.0487 25 8 -1.8928 10.6840 3.4010 26 14 -1.9565 8.3601 2.0288 27 6 0.3604 9.8152 1.0859 28 6 3.6385 5.8881 1.2170 29 6 1.9212 3.6047 0.0040 30 6 1.2916 2.3751 -0.0011 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 4.0208 0.3798 -0.0002 35 1 5.1345 2.5750 -0.0019 36 1 2.2046 5.8889 -0.9849 37 1 3.7771 6.2875 -1.8033 38 1 1.7062 7.7166 0.9881 39 1 2.6864 14.0288 -0.0941 40 1 3.7136 13.6219 -1.4900 41 1 1.9419 13.6245 -1.6596 42 1 0.6616 13.5082 -0.0093 43 1 -1.2576 14.2671 -0.3050 44 1 -2.2751 14.8285 1.0430 45 1 -0.5154 14.6705 1.2617 46 1 -2.7855 10.6151 1.5391 47 1 -1.8666 11.6467 3.4877 48 1 -3.1620 7.8770 2.7490 49 1 -1.9703 7.8672 0.6280 50 1 0.2735 8.7836 1.3936 51 1 4.4404 5.9488 1.9527 52 1 2.6721 5.6503 1.6615 53 1 1.3343 4.5113 0.0081 54 1 0.2129 2.3202 -0.0011 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100430_12297780.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:17:57 Heat of formation + Delta-G solvation = -88.905506 kcal Electronic energy + Delta-G solvation = -37739.289991 eV Core-core repulsion = 32803.215952 eV Total energy + Delta-G solvation = -4936.074039 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.181 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.14802 -41.43074 -40.71056 -40.12677 -39.41045 -38.39375 -37.73642 -36.99538 -34.57774 -32.25224 -32.00807 -31.86558 -30.88116 -29.00474 -28.35593 -28.10417 -26.57741 -26.14655 -25.79100 -24.40917 -23.64625 -22.93449 -22.07839 -21.47957 -20.43365 -19.94540 -19.11640 -18.61260 -18.57118 -17.87597 -17.54524 -17.22421 -17.13393 -16.84993 -16.62304 -16.60951 -16.38280 -16.06993 -15.82821 -15.78412 -15.64743 -15.53515 -15.40570 -14.76976 -14.57958 -14.34242 -14.27515 -14.20039 -14.09048 -14.00892 -13.54437 -13.41422 -13.33850 -13.13333 -12.93164 -12.70652 -12.68860 -12.56052 -12.52647 -12.27970 -12.17734 -12.04261 -11.67320 -11.56465 -11.46956 -11.36536 -11.32896 -11.23148 -10.79626 -10.03428 -9.91588 -9.89644 -9.20322 -8.95741 -4.95097 -0.28595 0.06941 0.44506 0.47725 1.36749 1.60290 1.75281 1.98469 2.04378 2.14416 2.20926 2.42783 2.60373 2.79763 3.44095 3.50361 3.58298 3.69303 3.72557 3.81112 3.83009 3.93494 3.95844 4.02562 4.07751 4.09521 4.16956 4.21639 4.24294 4.26015 4.27005 4.28364 4.31163 4.36512 4.38725 4.48383 4.55623 4.62420 4.65739 4.69632 4.74322 4.75509 4.80452 4.86149 4.90888 4.93310 4.99703 5.06475 5.14827 5.18199 5.25518 5.27725 5.40828 5.46792 5.65573 5.79494 5.89283 5.97064 6.26036 6.49081 6.60270 6.61285 7.29909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C 0.102 3.898 4 C -0.169 4.169 5 C -0.081 4.081 6 C -0.108 4.108 7 C -0.061 4.061 8 H 0.105 0.895 9 C -0.144 4.144 10 C 0.120 3.880 11 H 0.098 0.902 12 N -0.707 5.707 13 C 0.564 3.436 14 O -0.565 6.565 15 C -0.225 4.225 16 C 0.215 3.785 17 O -0.303 6.303 18 C 0.010 3.990 19 C -0.307 4.307 20 C 0.204 3.796 21 O -0.318 6.318 22 C 0.013 3.987 23 C -0.199 4.199 24 C -0.076 4.076 25 O -0.547 6.547 26 Si 0.801 3.199 27 C 0.008 3.992 28 C -0.125 4.125 29 C -0.079 4.079 30 C -0.211 4.211 31 H 0.112 0.888 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.129 0.871 35 H 0.143 0.857 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.412 0.588 39 H 0.072 0.928 40 H 0.113 0.887 41 H 0.070 0.930 42 H 0.164 0.836 43 H 0.067 0.933 44 H 0.123 0.877 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.374 0.626 48 H -0.294 1.294 49 H -0.251 1.251 50 H 0.166 0.834 51 H 0.084 0.916 52 H 0.106 0.894 53 H 0.146 0.854 54 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.296 2.992 1.125 4.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.257 6.257 3 C 0.057 3.943 4 C -0.187 4.187 5 C -0.099 4.099 6 C -0.108 4.108 7 C -0.079 4.079 8 H 0.124 0.876 9 C -0.183 4.183 10 C 0.016 3.984 11 H 0.116 0.884 12 N -0.359 5.359 13 C 0.353 3.647 14 O -0.445 6.445 15 C -0.229 4.229 16 C 0.165 3.835 17 O -0.214 6.214 18 C -0.084 4.084 19 C -0.326 4.326 20 C 0.156 3.844 21 O -0.230 6.230 22 C -0.081 4.081 23 C -0.201 4.201 24 C -0.183 4.183 25 O -0.353 6.353 26 Si 0.701 3.299 27 C -0.010 4.010 28 C -0.163 4.163 29 C -0.097 4.097 30 C -0.229 4.229 31 H 0.131 0.869 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.147 0.853 35 H 0.161 0.839 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.250 0.750 39 H 0.090 0.910 40 H 0.131 0.869 41 H 0.089 0.911 42 H 0.182 0.818 43 H 0.085 0.915 44 H 0.141 0.859 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.222 0.778 48 H -0.221 1.221 49 H -0.177 1.177 50 H 0.183 0.817 51 H 0.103 0.897 52 H 0.124 0.876 53 H 0.164 0.836 54 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.964 1.644 0.620 3.446 hybrid contribution -1.130 2.101 -0.619 2.464 sum -4.094 3.745 0.001 5.549 Atomic orbital electron populations 1.23285 0.76705 1.05275 1.02180 1.86041 1.23258 1.27496 1.88868 1.19337 0.92861 0.84728 0.97368 1.20638 0.91721 0.99347 1.07032 1.21102 1.00774 0.90754 0.97285 1.19692 0.93600 0.94549 1.02988 1.21213 0.99965 0.89477 0.97282 0.87632 1.23629 1.01968 0.94795 0.97867 1.22506 0.91177 0.87651 0.97098 0.88392 1.45782 1.21690 1.08160 1.60310 1.18046 0.86009 0.82568 0.78117 1.90813 1.32425 1.78276 1.42949 1.19224 0.98290 0.92415 1.12973 1.19000 0.85276 0.91804 0.87388 1.86370 1.35806 1.29538 1.69703 1.23475 1.05141 0.78617 1.01182 1.21412 0.95600 1.02411 1.13222 1.18894 0.86071 0.89541 0.89859 1.86036 1.39376 1.21834 1.75768 1.23481 1.05421 0.78329 1.00858 1.19565 0.99933 0.91702 1.08868 1.25489 0.94272 1.14363 0.84166 1.86681 1.97090 1.27812 1.23711 0.92637 0.86067 0.71418 0.79769 1.20855 0.89240 0.99293 0.91574 1.23458 1.04159 0.92339 0.96300 1.21056 0.94177 0.97486 0.96951 1.21463 1.00920 0.92130 1.08428 0.86947 0.91601 0.91900 0.85324 0.83938 0.88450 0.91850 0.74976 0.90968 0.86900 0.91109 0.81825 0.91461 0.85920 0.91042 0.91240 0.77780 1.22112 1.17659 0.81750 0.89745 0.87556 0.83611 0.83967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.07 16 2 O -0.34 -1.89 10.50 -92.35 -0.97 -2.86 16 3 C 0.10 0.50 6.69 22.51 0.15 0.65 16 4 C -0.17 -0.71 9.99 22.36 0.22 -0.49 16 5 C -0.08 -0.09 9.70 22.25 0.22 0.12 16 6 C -0.11 0.06 5.29 -19.85 -0.11 -0.05 16 7 C -0.06 0.19 3.97 -11.01 -0.04 0.14 16 8 H 0.11 -0.39 8.09 -2.39 -0.02 -0.40 16 9 C -0.14 0.23 7.25 31.12 0.23 0.45 16 10 C 0.12 -0.07 4.24 45.52 0.19 0.12 16 11 H 0.10 0.40 7.46 -2.38 -0.02 0.38 16 12 N -0.71 0.24 5.30 -443.42 -2.35 -2.11 16 13 C 0.56 4.22 7.76 86.63 0.67 4.89 16 14 O -0.56 -9.11 14.75 16.88 0.25 -8.86 16 15 C -0.22 -1.12 5.89 -20.00 -0.12 -1.24 16 16 C 0.21 1.25 6.70 22.82 0.15 1.40 16 17 O -0.30 -2.45 8.56 -68.72 -0.59 -3.04 16 18 C 0.01 -0.02 9.81 113.37 1.11 1.10 16 19 C -0.31 -0.27 8.01 22.42 0.18 -0.09 16 20 C 0.20 0.22 6.63 22.60 0.15 0.37 16 21 O -0.32 0.36 9.37 -90.42 -0.85 -0.49 16 22 C 0.01 -0.10 9.80 113.37 1.11 1.01 16 23 C -0.20 -0.20 5.27 -19.80 -0.10 -0.30 16 24 C -0.08 -0.04 2.32 71.23 0.17 0.12 16 25 O -0.55 -1.12 12.65 -148.98 -1.89 -3.00 16 26 Si 0.80 -1.93 30.16 68.60 2.07 0.13 16 27 C 0.01 0.00 8.13 22.50 0.18 0.18 16 28 C -0.12 0.62 7.30 31.12 0.23 0.85 16 29 C -0.08 0.10 8.59 22.25 0.19 0.29 16 30 C -0.21 -0.20 9.04 22.37 0.20 0.01 16 31 H 0.11 -0.60 8.14 -2.39 -0.02 -0.61 16 32 H 0.07 -0.30 7.66 -2.39 -0.02 -0.32 16 33 H 0.06 -0.25 7.66 -2.39 -0.02 -0.27 16 34 H 0.13 0.41 8.06 -2.91 -0.02 0.39 16 35 H 0.14 -0.36 8.05 -2.91 -0.02 -0.39 16 36 H 0.10 -0.33 6.33 -2.39 -0.02 -0.35 16 37 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.41 -2.93 6.75 -92.71 -0.63 -3.56 16 39 H 0.07 -0.36 7.66 -2.38 -0.02 -0.38 16 40 H 0.11 -0.38 8.14 -2.38 -0.02 -0.40 16 41 H 0.07 -0.34 7.66 -2.38 -0.02 -0.36 16 42 H 0.16 -0.71 4.50 -2.91 -0.01 -0.72 16 43 H 0.07 -0.59 7.65 -2.39 -0.02 -0.61 16 44 H 0.12 -1.32 8.14 -2.39 -0.02 -1.34 16 45 H 0.07 -0.67 7.65 -2.39 -0.02 -0.69 16 46 H 0.07 0.09 7.81 -2.39 -0.02 0.07 16 47 H 0.37 -0.61 8.61 -74.06 -0.64 -1.25 16 48 H -0.29 -1.38 7.11 99.48 0.71 -0.67 16 49 H -0.25 0.36 7.11 99.48 0.71 1.06 16 50 H 0.17 -1.17 3.44 -2.91 -0.01 -1.18 16 51 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 52 H 0.11 -0.85 7.69 -2.39 -0.02 -0.86 16 53 H 0.15 -0.90 6.68 -2.91 -0.02 -0.92 16 54 H 0.14 -0.43 6.30 -2.91 -0.02 -0.45 16 Total: 0.00 -25.37 434.10 1.52 -23.85 By element: Atomic # 1 Polarization: -13.99 SS G_CDS: -0.25 Total: -14.24 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 6.10 Total: 10.62 kcal Atomic # 7 Polarization: 0.24 SS G_CDS: -2.35 Total: -2.11 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -4.04 Total: -18.25 kcal Atomic # 14 Polarization: -1.93 SS G_CDS: 2.07 Total: 0.13 kcal Total: -25.37 1.52 -23.85 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100430_12297780.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.056 kcal (2) G-P(sol) polarization free energy of solvation -25.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds