Wall clock time and date at job start Sun Mar 7 2021 05:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35902 * 116.99530 * 2 1 4 4 C 1.38734 * 120.05393 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94577 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05537 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.94583 * 179.97438 * 6 5 4 8 8 H 1.09002 * 112.84782 * 9.67048 * 7 6 5 9 9 C 1.53786 * 113.61519 * 140.86458 * 7 6 5 10 10 C 1.54049 * 86.98426 * 140.01979 * 9 7 6 11 11 H 1.09003 * 113.61268 * 89.11946 * 10 9 7 12 12 N 1.46505 * 113.69488 * 220.01078 * 10 9 7 13 13 C 1.34774 * 119.99857 * 252.53547 * 12 10 9 14 14 O 1.21571 * 120.00465 * 359.97438 * 13 12 10 15 15 C 1.47689 * 120.00104 * 180.02562 * 13 12 10 16 16 C 1.39828 * 120.17038 * 179.97438 * 15 13 12 17 17 F 1.35100 * 120.10592 * 359.97438 * 16 15 13 18 18 C 1.38321 * 119.77846 * 180.02562 * 16 15 13 19 19 C 1.38201 * 120.12052 * 0.02562 * 18 16 15 20 20 C 1.38463 * 120.33837 * 359.97438 * 19 18 16 21 21 C 1.50695 * 119.89034 * 180.02562 * 20 19 18 22 22 O 1.42910 * 109.46866 * 120.00351 * 21 20 19 23 23 Si 1.86299 * 109.47188 * 0.02562 * 21 20 19 24 24 C 1.37861 * 120.21828 * 359.72696 * 20 19 18 25 25 C 1.53781 * 113.61630 * 238.47406 * 7 6 5 26 26 C 1.38267 * 120.11178 * 0.27648 * 6 5 4 27 27 C 1.38152 * 120.05496 * 359.44802 * 26 6 5 28 28 H 1.09003 * 109.47167 * 299.99712 * 1 2 3 29 29 H 1.09000 * 109.47405 * 60.00491 * 1 2 3 30 30 H 1.09000 * 109.46766 * 180.02562 * 1 2 3 31 31 H 1.07996 * 120.02616 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.97414 * 179.97438 * 5 4 3 33 33 H 1.08992 * 113.61675 * 254.61723 * 9 7 6 34 34 H 1.09000 * 113.60973 * 25.52011 * 9 7 6 35 35 H 0.96997 * 119.99602 * 72.53992 * 12 10 9 36 36 H 1.07997 * 119.93767 * 180.02562 * 18 16 15 37 37 H 1.07994 * 119.83010 * 180.02562 * 19 18 16 38 38 H 1.08998 * 109.47463 * 240.00292 * 21 20 19 39 39 H 0.96698 * 113.99563 * 179.97438 * 22 21 20 40 40 H 1.48502 * 110.00060 * 298.67975 * 23 21 20 41 41 H 1.48500 * 110.00078 * 59.99570 * 23 21 20 42 42 H 1.08003 * 120.05944 * 180.29438 * 24 20 19 43 43 H 1.08999 * 113.61567 * 334.48200 * 25 7 6 44 44 H 1.08998 * 113.61196 * 105.38554 * 25 7 6 45 45 H 1.08003 * 119.97568 * 179.72634 * 26 6 5 46 46 H 1.07993 * 120.02822 * 180.27567 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4312 1.2850 -0.0005 5 6 4.0560 2.5171 -0.0011 6 6 3.3018 3.6759 -0.0016 7 6 3.9858 5.0187 -0.0016 8 1 5.0603 4.9462 -0.1699 9 6 3.2920 6.0635 -0.8914 10 6 3.5889 7.0880 0.2201 11 1 4.5549 7.5814 0.1124 12 7 2.4928 8.0298 0.4608 13 6 2.6085 9.3134 0.0667 14 8 3.6225 9.6899 -0.4882 15 6 1.5038 10.2630 0.3099 16 6 1.6202 11.5957 -0.0971 17 9 2.7447 12.0200 -0.7142 18 6 0.5808 12.4782 0.1352 19 6 -0.5688 12.0446 0.7679 20 6 -0.6894 10.7261 1.1730 21 6 -1.9477 10.2640 1.8614 22 8 -2.5545 9.2215 1.0952 23 14 -3.1332 11.6931 2.0131 24 6 0.3354 9.8331 0.9430 25 6 3.6085 5.9023 1.1991 26 6 1.9209 3.6048 0.0042 27 6 1.2913 2.3751 -0.0010 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.0208 0.3801 -0.0014 32 1 5.1344 2.5752 -0.0011 33 1 3.8203 6.2631 -1.8236 34 1 2.2286 5.8747 -1.0384 35 1 1.6839 7.7294 0.9039 36 1 0.6679 13.5080 -0.1783 37 1 -1.3776 12.7376 0.9466 38 1 -1.7016 9.8887 2.8547 39 1 -3.3711 8.8748 1.4801 40 1 -2.5265 12.7714 2.8343 41 1 -3.4766 12.2134 0.6653 42 1 0.2367 8.8041 1.2557 43 1 2.6315 5.6695 1.6226 44 1 4.3923 5.9717 1.9534 45 1 1.3340 4.5114 0.0082 46 1 0.2128 2.3202 -0.0010 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100430_12335834.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:18:03 Heat of formation + Delta-G solvation = -59.827352 kcal Electronic energy + Delta-G solvation = -30787.462488 eV Core-core repulsion = 26331.635020 eV Total energy + Delta-G solvation = -4455.827469 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.141 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -50.14134 -41.76230 -41.15251 -40.35039 -39.50787 -37.84331 -37.42942 -34.94563 -32.84274 -32.46701 -32.02192 -31.03594 -28.28279 -26.70171 -26.64958 -26.33501 -25.03414 -23.78941 -23.16416 -22.08609 -21.68982 -20.44970 -19.22176 -19.12671 -18.60985 -18.21808 -17.99217 -17.49984 -17.04822 -16.97467 -16.64778 -16.50823 -16.20264 -16.12669 -15.78572 -15.73381 -15.49043 -15.17696 -14.64225 -14.62343 -14.50480 -14.36196 -14.12691 -14.10653 -13.95618 -13.48602 -13.45361 -13.22566 -13.02926 -12.77805 -12.64802 -12.52268 -12.36312 -12.13364 -11.99420 -11.63707 -11.57651 -11.45349 -11.14136 -10.54891 -10.39142 -10.14170 -9.95045 -9.87008 -9.01190 -4.90972 -0.66089 -0.17204 0.39411 0.42152 1.30622 1.48138 1.68704 1.90433 1.99371 2.33718 2.39612 2.73880 2.89207 3.22735 3.27490 3.40830 3.49416 3.64846 3.68636 3.71721 3.86993 3.90721 3.95386 4.00209 4.06525 4.15850 4.25442 4.28079 4.37317 4.42394 4.48997 4.49693 4.59297 4.65499 4.68375 4.72030 4.73171 4.74929 4.75756 4.82865 4.95548 4.99872 5.02669 5.07836 5.14404 5.33111 5.40532 5.42371 5.49685 5.72110 5.83980 6.32187 6.45311 6.93856 6.99274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C 0.104 3.896 4 C -0.169 4.169 5 C -0.081 4.081 6 C -0.110 4.110 7 C -0.059 4.059 8 H 0.107 0.893 9 C -0.143 4.143 10 C 0.116 3.884 11 H 0.098 0.902 12 N -0.695 5.695 13 C 0.556 3.444 14 O -0.570 6.570 15 C -0.184 4.184 16 C 0.133 3.867 17 F -0.133 7.133 18 C -0.154 4.154 19 C -0.075 4.075 20 C -0.100 4.100 21 C -0.071 4.071 22 O -0.560 6.560 23 Si 0.763 3.237 24 C -0.019 4.019 25 C -0.121 4.121 26 C -0.078 4.078 27 C -0.210 4.210 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.113 0.887 31 H 0.130 0.870 32 H 0.143 0.857 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.416 0.584 36 H 0.162 0.838 37 H 0.141 0.859 38 H 0.110 0.890 39 H 0.407 0.593 40 H -0.285 1.285 41 H -0.296 1.296 42 H 0.171 0.829 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.144 0.856 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.340 -3.015 6.367 11.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.059 3.941 4 C -0.187 4.187 5 C -0.099 4.099 6 C -0.111 4.111 7 C -0.078 4.078 8 H 0.125 0.875 9 C -0.181 4.181 10 C 0.011 3.989 11 H 0.117 0.883 12 N -0.346 5.346 13 C 0.344 3.656 14 O -0.450 6.450 15 C -0.188 4.188 16 C 0.113 3.887 17 F -0.111 7.111 18 C -0.173 4.173 19 C -0.093 4.093 20 C -0.100 4.100 21 C -0.181 4.181 22 O -0.371 6.371 23 Si 0.670 3.330 24 C -0.037 4.037 25 C -0.159 4.159 26 C -0.096 4.096 27 C -0.229 4.229 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.131 0.869 31 H 0.148 0.852 32 H 0.161 0.839 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.255 0.745 36 H 0.180 0.820 37 H 0.158 0.842 38 H 0.128 0.872 39 H 0.259 0.741 40 H -0.213 1.213 41 H -0.224 1.224 42 H 0.188 0.812 43 H 0.123 0.877 44 H 0.103 0.897 45 H 0.161 0.839 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.136 -2.010 5.434 9.988 hybrid contribution 0.481 0.143 -0.427 0.659 sum -7.655 -1.867 5.006 9.336 Atomic orbital electron populations 1.23300 0.76608 1.05354 1.02217 1.86049 1.23352 1.27378 1.88806 1.19338 0.92842 0.84770 0.97180 1.20649 0.91776 0.99340 1.06953 1.21107 1.00790 0.90768 0.97241 1.19669 0.93633 0.94459 1.03299 1.21205 1.00092 0.89574 0.96931 0.87518 1.23666 1.02132 0.94633 0.97708 1.22666 0.90956 0.87585 0.97683 0.88347 1.45741 1.20793 1.08011 1.60106 1.18235 0.86063 0.83082 0.78209 1.90839 1.31901 1.78623 1.43680 1.20172 0.97774 0.93115 1.07718 1.18094 0.83555 0.92547 0.94509 1.91563 1.49720 1.90130 1.79710 1.21267 0.92509 1.01340 1.02177 1.21170 0.96844 0.96053 0.95201 1.19754 0.96523 0.93124 1.00606 1.24675 0.95657 1.01001 0.96789 1.86427 1.45154 1.53742 1.51772 0.94166 0.84508 0.75467 0.78894 1.21261 0.88813 1.01052 0.92595 1.23425 1.04009 0.92148 0.96360 1.21016 0.94090 0.97461 0.97021 1.21462 1.00979 0.92055 1.08374 0.91553 0.91846 0.86869 0.85200 0.83924 0.91742 0.88445 0.74538 0.82009 0.84225 0.87189 0.74082 1.21254 1.22417 0.81212 0.87727 0.89656 0.83877 0.83830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 113.37 1.11 1.05 16 2 O -0.34 -1.67 10.50 -92.45 -0.97 -2.64 16 3 C 0.10 0.46 6.69 22.51 0.15 0.61 16 4 C -0.17 -0.65 9.99 22.37 0.22 -0.43 16 5 C -0.08 -0.08 9.70 22.25 0.22 0.13 16 6 C -0.11 0.06 5.29 -19.85 -0.11 -0.04 16 7 C -0.06 0.17 3.97 -11.01 -0.04 0.13 16 8 H 0.11 -0.37 8.08 -2.39 -0.02 -0.39 16 9 C -0.14 0.17 7.28 31.21 0.23 0.40 16 10 C 0.12 -0.02 4.24 45.61 0.19 0.17 16 11 H 0.10 0.45 7.46 -2.39 -0.02 0.44 16 12 N -0.69 0.13 5.31 -442.61 -2.35 -2.22 16 13 C 0.56 4.62 7.77 86.74 0.67 5.30 16 14 O -0.57 -10.17 14.94 -3.94 -0.06 -10.23 16 15 C -0.18 -1.04 5.88 -20.05 -0.12 -1.15 16 16 C 0.13 1.16 7.29 22.67 0.17 1.33 16 17 F -0.13 -1.97 15.55 44.97 0.70 -1.27 16 18 C -0.15 -0.54 10.01 22.28 0.22 -0.32 16 19 C -0.07 -0.07 8.66 22.31 0.19 0.12 16 20 C -0.10 0.12 5.42 -19.90 -0.11 0.01 16 21 C -0.07 0.54 2.81 71.23 0.20 0.74 16 22 O -0.56 4.36 12.73 -148.98 -1.90 2.47 16 23 Si 0.76 -5.44 29.78 68.60 2.04 -3.40 16 24 C -0.02 0.02 9.09 22.52 0.20 0.23 16 25 C -0.12 0.59 7.29 31.12 0.23 0.82 16 26 C -0.08 0.11 8.52 22.26 0.19 0.30 16 27 C -0.21 -0.10 9.04 22.37 0.20 0.10 16 28 H 0.07 -0.36 7.66 -2.39 -0.02 -0.38 16 29 H 0.06 -0.31 7.66 -2.39 -0.02 -0.32 16 30 H 0.11 -0.69 8.14 -2.39 -0.02 -0.71 16 31 H 0.13 0.36 8.06 -2.91 -0.02 0.34 16 32 H 0.14 -0.37 8.05 -2.91 -0.02 -0.40 16 33 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 34 H 0.10 -0.28 6.41 -2.39 -0.02 -0.30 16 35 H 0.42 -2.95 6.76 -92.71 -0.63 -3.58 16 36 H 0.16 -0.05 8.06 -2.91 -0.02 -0.08 16 37 H 0.14 -0.16 4.86 -2.91 -0.01 -0.17 16 38 H 0.11 -1.41 7.96 -2.39 -0.02 -1.43 16 39 H 0.41 -7.21 8.74 -74.06 -0.65 -7.86 16 40 H -0.29 0.47 7.11 99.48 0.71 1.17 16 41 H -0.30 -0.28 7.11 99.48 0.71 0.43 16 42 H 0.17 -1.37 6.41 -2.91 -0.02 -1.39 16 43 H 0.10 -0.81 7.59 -2.39 -0.02 -0.83 16 44 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 45 H 0.14 -0.87 6.72 -2.91 -0.02 -0.89 16 46 H 0.14 -0.53 6.30 -2.91 -0.02 -0.54 16 Total: 0.00 -26.37 382.97 1.31 -25.07 By element: Atomic # 1 Polarization: -17.08 SS G_CDS: -0.19 Total: -17.26 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 4.03 Total: 9.47 kcal Atomic # 7 Polarization: 0.13 SS G_CDS: -2.35 Total: -2.22 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -2.93 Total: -10.40 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.70 Total: -1.27 kcal Atomic # 14 Polarization: -5.44 SS G_CDS: 2.04 Total: -3.40 kcal Total: -26.37 1.31 -25.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100430_12335834.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.759 kcal (2) G-P(sol) polarization free energy of solvation -26.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds