Wall clock time and date at job start Sun Mar 7 2021 05:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 117.00197 * 2 1 4 4 C 1.38737 * 120.05795 * 180.02562 * 3 2 1 5 5 C 1.38140 * 119.94629 * 179.97438 * 4 3 2 6 6 C 1.38265 * 120.05543 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.94301 * 180.02562 * 6 5 4 8 8 H 1.08994 * 112.85506 * 348.80259 * 7 6 5 9 9 C 1.53787 * 113.61623 * 119.99927 * 7 6 5 10 10 C 1.53790 * 87.08146 * 140.06269 * 9 7 6 11 11 H 1.09000 * 113.61264 * 89.20383 * 10 9 7 12 12 N 1.46498 * 113.61410 * 220.02054 * 10 9 7 13 13 C 1.34775 * 120.00034 * 205.00184 * 12 10 9 14 14 O 1.21591 * 119.99660 * 0.02562 * 13 12 10 15 15 C 1.47530 * 120.00298 * 180.02562 * 13 12 10 16 16 C 1.40139 * 120.19496 * 179.97438 * 15 13 12 17 17 O 1.35650 * 120.14849 * 359.97438 * 16 15 13 18 18 C 1.42894 * 117.00294 * 180.02562 * 17 16 15 19 19 C 1.38707 * 119.70092 * 180.02562 * 16 15 13 20 20 C 1.38055 * 120.08354 * 359.72104 * 19 16 15 21 21 C 1.38546 * 120.39123 * 0.55713 * 20 19 16 22 22 C 1.50696 * 119.85216 * 179.71673 * 21 20 19 23 23 O 1.42903 * 109.47131 * 119.72165 * 22 21 20 24 24 Si 1.86305 * 109.47185 * 359.72706 * 22 21 20 25 25 C 1.37786 * 120.29894 * 359.44235 * 21 20 19 26 26 C 1.53781 * 87.08142 * 334.56871 * 10 9 7 27 27 C 1.38267 * 120.11210 * 0.27804 * 6 5 4 28 28 C 1.38140 * 120.05503 * 359.44812 * 27 6 5 29 29 H 1.08993 * 109.47056 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47053 * 300.00770 * 1 2 3 31 31 H 1.08996 * 109.46786 * 60.00412 * 1 2 3 32 32 H 1.08002 * 120.02327 * 359.97438 * 4 3 2 33 33 H 1.08002 * 119.97577 * 180.02562 * 5 4 3 34 34 H 1.09002 * 113.61336 * 25.51786 * 9 7 6 35 35 H 1.08995 * 113.61804 * 254.61117 * 9 7 6 36 36 H 0.96999 * 120.00214 * 25.00214 * 12 10 9 37 37 H 1.09003 * 109.47021 * 60.00040 * 18 17 16 38 38 H 1.09000 * 109.47639 * 180.02562 * 18 17 16 39 39 H 1.09003 * 109.46947 * 300.00482 * 18 17 16 40 40 H 1.07998 * 119.95794 * 180.02562 * 19 16 15 41 41 H 1.08006 * 119.80549 * 180.27023 * 20 19 16 42 42 H 1.08999 * 109.47358 * 239.72525 * 22 21 20 43 43 H 0.96700 * 114.00311 * 300.00591 * 23 22 21 44 44 H 1.48497 * 110.00233 * 179.97438 * 24 22 21 45 45 H 1.48492 * 109.99800 * 301.31995 * 24 22 21 46 46 H 1.08001 * 120.04552 * 180.29530 * 25 21 20 47 47 H 1.08999 * 113.61385 * 139.97988 * 26 10 9 48 48 H 1.08995 * 113.61650 * 270.88312 * 26 10 9 49 49 H 1.07996 * 119.97409 * 179.72995 * 27 6 5 50 50 H 1.08000 * 120.03106 * 180.27602 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0562 2.5168 -0.0011 6 6 3.3021 3.6757 -0.0016 7 6 3.9863 5.0184 -0.0028 8 1 5.0564 4.9484 0.1919 9 6 3.6379 5.8863 -1.2236 10 6 3.5952 7.0847 -0.2607 11 1 4.5581 7.5804 -0.1376 12 7 2.5042 8.0222 -0.5385 13 6 2.6100 9.3109 -0.1586 14 8 3.6111 9.6957 0.4142 15 6 1.5111 10.2549 -0.4378 16 6 1.6166 11.5957 -0.0442 17 8 2.7299 12.0322 0.5962 18 6 2.7661 13.4116 0.9675 19 6 0.5770 12.4743 -0.3114 20 6 -0.5534 12.0297 -0.9674 21 6 -0.6640 10.7036 -1.3532 22 6 -1.9061 10.2299 -2.0629 23 8 -1.5541 9.7224 -3.3516 24 14 -3.0907 11.6544 -2.2589 25 6 0.3590 9.8171 -1.0958 26 6 3.2721 6.0766 0.8547 27 6 1.9212 3.6047 0.0042 28 6 1.2916 2.3752 -0.0010 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.0209 0.3798 -0.0005 33 1 5.1347 2.5750 -0.0019 34 1 2.6711 5.6480 -1.6671 35 1 4.4393 5.9462 -1.9598 36 1 1.7057 7.7153 -0.9958 37 1 1.9369 13.6284 1.6409 38 1 3.7088 13.6281 1.4700 39 1 2.6802 14.0306 0.0744 40 1 0.6541 13.5085 -0.0102 41 1 -1.3583 12.7186 -1.1771 42 1 -2.3799 9.4411 -1.4787 43 1 -1.1268 10.3718 -3.9268 44 1 -4.3197 11.2005 -2.9581 45 1 -3.4397 12.2116 -0.9275 46 1 0.2704 8.7854 -1.4026 47 1 3.7784 6.2899 1.7961 48 1 2.2055 5.8902 0.9793 49 1 1.3344 4.5113 0.0082 50 1 0.2130 2.3202 -0.0009 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100430_12496546.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:19:00 Heat of formation + Delta-G solvation = -50.806904 kcal Electronic energy + Delta-G solvation = -32774.550021 eV Core-core repulsion = 28314.347872 eV Total energy + Delta-G solvation = -4460.202148 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.88425 -41.37145 -40.55028 -39.44514 -39.17540 -37.80777 -37.09198 -34.72294 -32.61989 -32.04435 -31.81298 -31.02603 -28.56092 -28.27262 -26.68441 -26.17339 -26.13540 -24.74657 -23.71921 -22.81782 -22.00824 -21.51242 -20.46022 -19.39933 -19.16966 -18.32468 -18.16894 -17.66552 -17.14162 -16.87636 -16.85806 -16.67354 -16.30323 -16.08039 -15.98433 -15.84593 -15.74358 -15.64652 -15.22307 -14.64405 -14.61589 -14.52839 -14.41929 -14.35597 -14.10227 -13.62802 -13.49139 -13.44537 -13.18323 -13.13984 -12.97999 -12.76902 -12.43889 -12.34864 -12.11511 -12.09110 -12.04235 -11.78427 -11.62971 -11.55909 -11.42874 -10.94631 -10.38436 -10.26611 -9.99507 -9.96627 -9.27977 -9.02723 -4.97220 -0.26399 0.21894 0.37489 0.40550 1.34469 1.65187 1.77486 2.00222 2.12868 2.27617 2.37139 2.67773 2.72913 3.47032 3.49255 3.57958 3.67395 3.72185 3.73066 3.77453 3.87217 3.94554 3.98298 4.00503 4.14304 4.19539 4.25968 4.30602 4.33916 4.36168 4.40690 4.41042 4.48830 4.56529 4.62107 4.67572 4.70326 4.71671 4.74186 4.76485 4.83553 4.91986 4.98160 5.03823 5.09928 5.10881 5.18317 5.27843 5.33553 5.39488 5.55693 5.57573 5.71658 5.82131 6.30745 6.42850 6.53207 6.81433 7.22274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.103 3.897 4 C -0.167 4.167 5 C -0.080 4.080 6 C -0.109 4.109 7 C -0.059 4.059 8 H 0.108 0.892 9 C -0.124 4.124 10 C 0.120 3.880 11 H 0.098 0.902 12 N -0.706 5.706 13 C 0.557 3.443 14 O -0.565 6.565 15 C -0.197 4.197 16 C 0.170 3.830 17 O -0.313 6.313 18 C 0.011 3.989 19 C -0.212 4.212 20 C -0.043 4.043 21 C -0.167 4.167 22 C -0.063 4.063 23 O -0.554 6.554 24 Si 0.770 3.230 25 C -0.016 4.016 26 C -0.143 4.143 27 C -0.080 4.080 28 C -0.211 4.211 29 H 0.114 0.886 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.132 0.868 33 H 0.145 0.855 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.411 0.589 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.162 0.838 41 H 0.157 0.843 42 H 0.113 0.887 43 H 0.396 0.604 44 H -0.302 1.302 45 H -0.284 1.284 46 H 0.150 0.850 47 H 0.064 0.936 48 H 0.094 0.906 49 H 0.141 0.859 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.140 3.659 -3.104 6.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.058 3.942 4 C -0.186 4.186 5 C -0.098 4.098 6 C -0.110 4.110 7 C -0.078 4.078 8 H 0.126 0.874 9 C -0.162 4.162 10 C 0.015 3.985 11 H 0.116 0.884 12 N -0.358 5.358 13 C 0.346 3.654 14 O -0.445 6.445 15 C -0.201 4.201 16 C 0.122 3.878 17 O -0.225 6.225 18 C -0.083 4.083 19 C -0.231 4.231 20 C -0.061 4.061 21 C -0.168 4.168 22 C -0.173 4.173 23 O -0.362 6.362 24 Si 0.676 3.324 25 C -0.035 4.035 26 C -0.181 4.181 27 C -0.098 4.098 28 C -0.230 4.230 29 H 0.132 0.868 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.150 0.850 33 H 0.163 0.837 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.249 0.751 37 H 0.090 0.910 38 H 0.125 0.875 39 H 0.094 0.906 40 H 0.180 0.820 41 H 0.174 0.826 42 H 0.130 0.870 43 H 0.246 0.754 44 H -0.230 1.230 45 H -0.211 1.211 46 H 0.167 0.833 47 H 0.083 0.917 48 H 0.112 0.888 49 H 0.158 0.842 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.197 3.416 -2.214 5.847 hybrid contribution -0.371 -0.485 0.442 0.754 sum -4.567 2.931 -1.771 5.709 Atomic orbital electron populations 1.23291 0.76673 1.05363 1.02123 1.86045 1.23278 1.27353 1.88820 1.19336 0.92892 0.84695 0.97244 1.20660 0.91678 0.99399 1.06836 1.21118 1.00851 0.90682 0.97159 1.19684 0.93540 0.94611 1.03139 1.21216 1.00082 0.89486 0.96998 0.87372 1.23418 1.03728 0.92620 0.96408 1.22505 0.91245 0.87700 0.97063 0.88395 1.45807 1.21518 1.08236 1.60281 1.18342 0.86335 0.82659 0.78110 1.90806 1.32535 1.78284 1.42870 1.19439 0.97834 0.92287 1.10567 1.19426 0.86396 0.92357 0.89631 1.86336 1.36345 1.29507 1.70302 1.23446 1.04856 0.78630 1.01373 1.21473 0.94202 1.01253 1.06129 1.21280 0.96749 0.94847 0.93190 1.20249 0.97962 0.94096 1.04497 1.25034 0.98855 1.07842 0.85616 1.86469 1.82448 1.43094 1.24168 0.93816 0.77019 0.80371 0.81164 1.21090 0.89845 1.00503 0.92064 1.23607 1.01799 0.94825 0.97904 1.21004 0.94226 0.97361 0.97179 1.21446 1.00895 0.92145 1.08514 0.86767 0.91898 0.91731 0.85030 0.83721 0.88291 0.89775 0.75112 0.91045 0.87486 0.90619 0.82029 0.82580 0.87011 0.75423 1.23024 1.21052 0.83250 0.91699 0.88767 0.84179 0.84056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.34 -2.06 10.50 -92.39 -0.97 -3.03 16 3 C 0.10 0.59 6.69 22.51 0.15 0.74 16 4 C -0.17 -0.80 9.99 22.37 0.22 -0.58 16 5 C -0.08 -0.16 9.70 22.25 0.22 0.06 16 6 C -0.11 -0.09 5.29 -19.85 -0.11 -0.20 16 7 C -0.06 0.09 3.97 -11.01 -0.04 0.05 16 8 H 0.11 -0.28 8.09 -2.39 -0.02 -0.30 16 9 C -0.12 0.36 7.30 31.13 0.23 0.58 16 10 C 0.12 0.15 4.24 45.52 0.19 0.34 16 11 H 0.10 0.57 7.46 -2.39 -0.02 0.55 16 12 N -0.71 -1.08 5.30 -443.19 -2.35 -3.43 16 13 C 0.56 4.89 7.76 86.69 0.67 5.56 16 14 O -0.57 -9.94 14.76 16.92 0.25 -9.69 16 15 C -0.20 -0.98 5.89 -20.01 -0.12 -1.10 16 16 C 0.17 0.88 6.70 22.84 0.15 1.03 16 17 O -0.31 -2.66 8.57 -68.73 -0.59 -3.25 16 18 C 0.01 -0.02 9.81 113.37 1.11 1.10 16 19 C -0.21 0.35 9.03 22.34 0.20 0.55 16 20 C -0.04 0.19 8.66 22.30 0.19 0.38 16 21 C -0.17 0.55 5.39 -19.90 -0.11 0.44 16 22 C -0.06 0.30 2.81 71.23 0.20 0.50 16 23 O -0.55 2.32 12.76 -148.98 -1.90 0.42 16 24 Si 0.77 -4.26 29.77 68.60 2.04 -2.21 16 25 C -0.02 0.02 9.09 22.52 0.20 0.22 16 26 C -0.14 -0.01 7.25 31.12 0.23 0.21 16 27 C -0.08 -0.04 8.62 22.25 0.19 0.15 16 28 C -0.21 -0.47 9.04 22.37 0.20 -0.27 16 29 H 0.11 -0.57 8.14 -2.39 -0.02 -0.59 16 30 H 0.06 -0.22 7.66 -2.39 -0.02 -0.23 16 31 H 0.06 -0.24 7.66 -2.39 -0.02 -0.26 16 32 H 0.13 0.45 8.06 -2.91 -0.02 0.43 16 33 H 0.15 -0.29 8.05 -2.91 -0.02 -0.31 16 34 H 0.10 -0.47 7.71 -2.39 -0.02 -0.49 16 35 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 36 H 0.41 -1.73 6.76 -92.71 -0.63 -2.35 16 37 H 0.07 -0.33 7.66 -2.39 -0.02 -0.35 16 38 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 39 H 0.08 -0.40 7.66 -2.39 -0.02 -0.42 16 40 H 0.16 -1.09 6.30 -2.91 -0.02 -1.11 16 41 H 0.16 -1.49 4.85 -2.91 -0.01 -1.50 16 42 H 0.11 -0.46 7.96 -2.39 -0.02 -0.48 16 43 H 0.40 -4.58 8.70 -74.06 -0.64 -5.23 16 44 H -0.30 -0.84 7.11 99.48 0.71 -0.13 16 45 H -0.28 0.29 7.11 99.48 0.71 1.00 16 46 H 0.15 -0.76 6.40 -2.91 -0.02 -0.78 16 47 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 48 H 0.09 -0.12 6.30 -2.39 -0.02 -0.14 16 49 H 0.14 -0.51 6.64 -2.91 -0.02 -0.53 16 50 H 0.14 -0.23 6.30 -2.91 -0.02 -0.25 16 Total: 0.00 -25.59 405.71 1.35 -24.24 By element: Atomic # 1 Polarization: -13.66 SS G_CDS: -0.23 Total: -13.89 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 5.11 Total: 10.85 kcal Atomic # 7 Polarization: -1.08 SS G_CDS: -2.35 Total: -3.43 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -3.21 Total: -15.56 kcal Atomic # 14 Polarization: -4.26 SS G_CDS: 2.04 Total: -2.21 kcal Total: -25.59 1.35 -24.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100430_12496546.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.572 kcal (2) G-P(sol) polarization free energy of solvation -25.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds