Wall clock time and date at job start Sun Mar 7 2021 05:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35901 * 116.99708 * 2 1 4 4 C 1.38735 * 120.05540 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94160 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.05888 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.94810 * 179.97438 * 6 5 4 8 8 H 1.09006 * 112.84327 * 9.65897 * 7 6 5 9 9 C 1.53771 * 113.61813 * 140.85891 * 7 6 5 10 10 C 1.53953 * 87.02166 * 139.95421 * 9 7 6 11 11 H 1.08994 * 113.54100 * 89.18614 * 10 9 7 12 12 N 1.46505 * 113.66928 * 220.07097 * 10 9 7 13 13 C 1.34775 * 119.99796 * 252.55710 * 12 10 9 14 14 O 1.21590 * 119.99886 * 359.97438 * 13 12 10 15 15 C 1.47563 * 119.99712 * 179.97438 * 13 12 10 16 16 C 1.40215 * 120.11692 * 179.97438 * 15 13 12 17 17 O 1.35645 * 120.00672 * 0.02847 * 16 15 13 18 18 C 1.38821 * 119.99135 * 180.02562 * 16 15 13 19 19 C 1.37768 * 120.24715 * 0.02562 * 18 16 15 20 20 C 1.39843 * 120.24436 * 359.97438 * 19 18 16 21 21 C 1.47814 * 120.00231 * 179.97438 * 20 19 18 22 22 C 1.35938 * 125.92710 * 359.72209 * 21 20 19 23 23 C 1.40968 * 106.74217 * 179.85399 * 22 21 20 24 24 C 1.34709 * 107.02689 * 0.40392 * 23 22 21 25 25 C 1.50700 * 125.66514 * 179.72749 * 24 23 22 26 26 O 1.42900 * 109.47065 * 65.00074 * 25 24 23 27 27 Si 1.86293 * 109.47244 * 185.00067 * 25 24 23 28 28 O 1.34341 * 108.66933 * 359.74971 * 24 23 22 29 29 C 1.39183 * 119.99870 * 359.72776 * 20 19 18 30 30 C 1.53779 * 113.61450 * 238.47374 * 7 6 5 31 31 C 1.38272 * 120.11190 * 359.97438 * 6 5 4 32 32 C 1.38139 * 120.05301 * 0.02562 * 31 6 5 33 33 H 1.09005 * 109.47380 * 299.99631 * 1 2 3 34 34 H 1.08996 * 109.47411 * 60.00354 * 1 2 3 35 35 H 1.09006 * 109.46679 * 180.02562 * 1 2 3 36 36 H 1.07994 * 120.02486 * 0.25666 * 4 3 2 37 37 H 1.07997 * 119.96880 * 179.97438 * 5 4 3 38 38 H 1.09001 * 113.61803 * 254.53246 * 9 7 6 39 39 H 1.09001 * 113.61836 * 25.43444 * 9 7 6 40 40 H 0.96998 * 119.99897 * 72.55148 * 12 10 9 41 41 H 0.96695 * 114.00545 * 89.99196 * 17 16 15 42 42 H 1.07999 * 119.87422 * 179.97438 * 18 16 15 43 43 H 1.07995 * 119.87525 * 179.97438 * 19 18 16 44 44 H 1.08004 * 126.63081 * 359.97438 * 22 21 20 45 45 H 1.07997 * 126.48795 * 180.15495 * 23 22 21 46 46 H 1.09004 * 109.47339 * 305.00275 * 25 24 23 47 47 H 0.96695 * 114.00536 * 180.02562 * 26 25 24 48 48 H 1.48501 * 110.00212 * 178.68520 * 27 25 24 49 49 H 1.48501 * 110.00166 * 300.00002 * 27 25 24 50 50 H 1.08003 * 120.12102 * 180.29639 * 29 20 19 51 51 H 1.09004 * 113.61446 * 334.55486 * 30 7 6 52 52 H 1.08995 * 113.61659 * 105.37956 * 30 7 6 53 53 H 1.07999 * 119.97367 * 180.02562 * 31 6 5 54 54 H 1.08005 * 120.02375 * 179.97438 * 32 31 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0560 2.5171 0.0000 6 6 3.3018 3.6759 -0.0005 7 6 3.9858 5.0187 -0.0005 8 1 5.0604 4.9462 -0.1686 9 6 3.2921 6.0635 -0.8904 10 6 3.5867 7.0876 0.2207 11 1 4.5520 7.5820 0.1122 12 7 2.4886 8.0272 0.4607 13 6 2.6018 9.3110 0.0662 14 8 3.6154 9.6894 -0.4885 15 6 1.4955 10.2572 0.3075 16 6 1.6107 11.5934 -0.1014 17 8 2.7404 12.0183 -0.7205 18 6 0.5686 12.4815 0.1274 19 6 -0.5808 12.0555 0.7562 20 6 -0.7066 10.7251 1.1682 21 6 -1.9419 10.2739 1.8429 22 6 -3.0233 11.0469 2.1272 23 6 -3.9629 10.2119 2.7654 24 6 -3.4104 8.9860 2.8461 25 6 -4.0550 7.7705 3.4611 26 8 -5.2065 7.4045 2.6981 27 14 -2.8394 6.3588 3.4667 28 8 -2.1893 9.0270 2.2876 29 6 0.3295 9.8245 0.9384 30 6 3.6084 5.9023 1.2002 31 6 1.9209 3.6048 -0.0011 32 6 1.2914 2.3751 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5137 -0.8900 35 1 -0.3633 -1.0277 0.0005 36 1 4.0208 0.3801 -0.0032 37 1 5.1344 2.5752 0.0008 38 1 3.8213 6.2641 -1.8219 39 1 2.2290 5.8740 -1.0388 40 1 1.6801 7.7254 0.9035 41 1 2.7176 11.9320 -1.6833 42 1 0.6596 13.5104 -0.1880 43 1 -1.3877 12.7516 0.9315 44 1 -3.1409 12.0973 1.9052 45 1 -4.9391 10.5013 3.1255 46 1 -4.3541 7.9965 4.4846 47 1 -5.6727 6.6283 3.0374 48 1 -3.4523 5.1633 4.0995 49 1 -2.4237 6.0409 2.0770 50 1 0.2325 8.7954 1.2515 51 1 2.6319 5.6686 1.6244 52 1 4.3921 5.9717 1.9546 53 1 1.3339 4.5114 -0.0019 54 1 0.2128 2.3202 -0.0005 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100430_13259648.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:19:48 Heat of formation + Delta-G solvation = -36.043271 kcal Electronic energy + Delta-G solvation = -39732.607587 eV Core-core repulsion = 34569.685024 eV Total energy + Delta-G solvation = -5162.922563 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 422.165 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -43.69425 -41.79929 -41.25622 -40.36819 -39.27431 -38.15023 -37.88480 -37.73548 -34.81970 -34.16529 -32.83576 -32.39933 -32.05965 -31.02868 -30.11285 -28.32665 -26.69286 -26.35765 -26.19234 -24.86981 -23.80865 -23.44915 -22.96363 -22.25121 -21.60319 -21.24985 -20.50511 -19.52442 -19.19662 -18.93924 -18.79067 -17.96021 -17.68288 -17.16006 -17.08070 -16.70457 -16.68499 -16.62459 -16.39657 -16.08637 -15.89235 -15.83917 -15.73018 -15.45912 -15.10099 -14.66467 -14.54082 -14.44198 -14.37982 -14.27167 -14.12504 -14.06623 -13.95058 -13.58511 -13.46278 -13.23389 -13.18848 -13.09280 -13.02324 -12.80732 -12.78538 -12.37328 -12.14294 -12.12168 -11.88118 -11.63456 -11.57288 -11.44487 -11.06103 -10.86126 -10.69549 -10.44218 -10.30612 -10.02921 -9.99021 -9.04831 -8.89750 -4.97251 -0.55784 -0.20854 0.35182 0.38586 0.75515 1.14669 1.38328 1.49630 1.70894 1.87041 1.91208 2.05814 2.34456 2.62608 2.70496 3.10922 3.20837 3.42212 3.47621 3.58712 3.66332 3.70478 3.71955 3.82824 3.85611 3.92379 3.98512 4.02203 4.06296 4.16728 4.19347 4.22893 4.29811 4.31661 4.38467 4.42248 4.46645 4.60308 4.64586 4.65829 4.68120 4.71785 4.74289 4.80634 4.82515 4.88729 4.95858 5.02949 5.03619 5.07599 5.13230 5.16479 5.21460 5.31218 5.37240 5.44997 5.51087 5.53385 5.69997 5.80182 6.00605 6.40129 6.42961 6.50462 6.72997 7.12387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.104 3.896 4 C -0.166 4.166 5 C -0.078 4.078 6 C -0.108 4.108 7 C -0.059 4.059 8 H 0.111 0.889 9 C -0.143 4.143 10 C 0.120 3.880 11 H 0.102 0.898 12 N -0.707 5.707 13 C 0.558 3.442 14 O -0.559 6.559 15 C -0.180 4.180 16 C 0.164 3.836 17 O -0.494 6.494 18 C -0.146 4.146 19 C -0.044 4.044 20 C -0.041 4.041 21 C 0.023 3.977 22 C -0.189 4.189 23 C -0.182 4.182 24 C -0.018 4.018 25 C -0.044 4.044 26 O -0.555 6.555 27 Si 0.759 3.241 28 O -0.175 6.175 29 C -0.052 4.052 30 C -0.126 4.126 31 C -0.081 4.081 32 C -0.213 4.213 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.115 0.885 36 H 0.133 0.867 37 H 0.147 0.853 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.410 0.590 41 H 0.410 0.590 42 H 0.165 0.835 43 H 0.166 0.834 44 H 0.177 0.823 45 H 0.164 0.836 46 H 0.125 0.875 47 H 0.404 0.596 48 H -0.266 1.266 49 H -0.298 1.298 50 H 0.147 0.853 51 H 0.098 0.902 52 H 0.086 0.914 53 H 0.137 0.863 54 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.348 0.103 3.876 6.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.059 3.941 4 C -0.184 4.184 5 C -0.096 4.096 6 C -0.108 4.108 7 C -0.078 4.078 8 H 0.129 0.871 9 C -0.181 4.181 10 C 0.015 3.985 11 H 0.120 0.880 12 N -0.358 5.358 13 C 0.346 3.654 14 O -0.438 6.438 15 C -0.183 4.183 16 C 0.117 3.883 17 O -0.308 6.308 18 C -0.164 4.164 19 C -0.062 4.062 20 C -0.042 4.042 21 C -0.027 4.027 22 C -0.208 4.208 23 C -0.201 4.201 24 C -0.068 4.068 25 C -0.152 4.152 26 O -0.367 6.367 27 Si 0.662 3.338 28 O -0.073 6.073 29 C -0.071 4.071 30 C -0.164 4.164 31 C -0.099 4.099 32 C -0.232 4.232 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.133 0.867 36 H 0.151 0.849 37 H 0.165 0.835 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.248 0.752 41 H 0.271 0.729 42 H 0.182 0.818 43 H 0.183 0.817 44 H 0.194 0.806 45 H 0.181 0.819 46 H 0.142 0.858 47 H 0.257 0.743 48 H -0.192 1.192 49 H -0.225 1.225 50 H 0.165 0.835 51 H 0.117 0.883 52 H 0.105 0.895 53 H 0.155 0.845 54 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.811 -0.271 3.414 5.124 hybrid contribution -1.990 -0.558 -0.685 2.178 sum -5.802 -0.829 2.729 6.465 Atomic orbital electron populations 1.23283 0.76780 1.05366 1.02005 1.86048 1.23165 1.27337 1.88822 1.19327 0.92927 0.84599 0.97250 1.20671 0.91575 0.99484 1.06712 1.21131 1.00910 0.90602 0.96990 1.19688 0.93376 0.94751 1.03016 1.21230 1.00222 0.89397 0.96949 0.87130 1.23629 1.01776 0.94804 0.97921 1.22580 0.91117 0.87609 0.97195 0.87967 1.45868 1.20506 1.08744 1.60698 1.18282 0.86451 0.82509 0.78168 1.90802 1.31464 1.78188 1.43335 1.20280 0.95819 0.94461 1.07779 1.18889 0.85869 0.89777 0.93724 1.84700 1.35047 1.85027 1.25997 1.21580 0.91656 1.01531 1.01660 1.21417 0.97995 0.93661 0.93176 1.17701 0.90509 0.94496 1.01454 1.20447 0.96575 0.82538 1.03136 1.22167 0.92809 1.02158 1.03626 1.21800 1.01788 0.92447 1.04033 1.21719 0.84592 0.97461 1.03017 1.24026 0.94055 1.00739 0.96382 1.86519 1.40829 1.52568 1.56736 0.93796 0.83567 0.75067 0.81354 1.83876 1.32674 1.31219 1.59547 1.21389 0.90611 1.00240 0.94824 1.23437 1.03763 0.92661 0.96543 1.20977 0.94342 0.97209 0.97348 1.21417 1.00736 0.92299 1.08753 0.91855 0.92037 0.86681 0.84924 0.83538 0.91346 0.89083 0.75219 0.72913 0.81777 0.81659 0.80563 0.81877 0.85791 0.74327 1.19154 1.22523 0.83543 0.88340 0.89528 0.84496 0.84446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.34 -2.00 10.50 -92.44 -0.97 -2.97 16 3 C 0.10 0.57 6.69 22.51 0.15 0.72 16 4 C -0.17 -0.71 9.99 22.37 0.22 -0.49 16 5 C -0.08 -0.10 9.70 22.25 0.22 0.11 16 6 C -0.11 -0.03 5.29 -19.85 -0.11 -0.14 16 7 C -0.06 0.15 3.97 -11.02 -0.04 0.11 16 8 H 0.11 -0.42 8.08 -2.38 -0.02 -0.44 16 9 C -0.14 0.14 7.27 31.18 0.23 0.37 16 10 C 0.12 -0.01 4.24 45.58 0.19 0.18 16 11 H 0.10 0.40 7.46 -2.39 -0.02 0.38 16 12 N -0.71 -0.31 5.31 -442.88 -2.35 -2.67 16 13 C 0.56 3.69 7.76 86.70 0.67 4.37 16 14 O -0.56 -7.82 14.74 16.99 0.25 -7.57 16 15 C -0.18 -0.66 5.88 -20.04 -0.12 -0.78 16 16 C 0.16 0.56 6.72 22.89 0.15 0.71 16 17 O -0.49 -2.75 11.55 -68.60 -0.79 -3.54 16 18 C -0.15 0.26 9.96 22.30 0.22 0.49 16 19 C -0.04 0.14 9.54 22.55 0.22 0.36 16 20 C -0.04 0.00 5.87 -20.13 -0.12 -0.12 16 21 C 0.02 0.03 7.03 24.27 0.17 0.20 16 22 C -0.19 0.05 10.26 22.40 0.23 0.28 16 23 C -0.18 -0.20 10.78 22.13 0.24 0.04 16 24 C -0.02 -0.03 6.24 24.88 0.16 0.12 16 25 C -0.04 0.13 2.97 71.24 0.21 0.34 16 26 O -0.55 0.43 12.86 -148.98 -1.92 -1.48 16 27 Si 0.76 -2.74 32.11 68.60 2.20 -0.54 16 28 O -0.18 -0.48 8.80 -6.48 -0.06 -0.54 16 29 C -0.05 -0.02 9.20 22.79 0.21 0.19 16 30 C -0.13 0.48 7.30 31.12 0.23 0.71 16 31 C -0.08 -0.04 8.53 22.25 0.19 0.15 16 32 C -0.21 -0.53 9.04 22.36 0.20 -0.33 16 33 H 0.06 -0.22 7.66 -2.38 -0.02 -0.24 16 34 H 0.06 -0.18 7.66 -2.39 -0.02 -0.20 16 35 H 0.11 -0.57 8.14 -2.38 -0.02 -0.59 16 36 H 0.13 0.37 8.06 -2.91 -0.02 0.35 16 37 H 0.15 -0.42 8.05 -2.91 -0.02 -0.45 16 38 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.09 -0.15 6.39 -2.39 -0.02 -0.17 16 40 H 0.41 -1.83 6.75 -92.71 -0.63 -2.45 16 41 H 0.41 -0.62 9.06 -74.06 -0.67 -1.29 16 42 H 0.16 -0.99 8.06 -2.91 -0.02 -1.02 16 43 H 0.17 -1.46 6.96 -2.91 -0.02 -1.48 16 44 H 0.18 -1.03 7.25 -2.91 -0.02 -1.05 16 45 H 0.16 -0.29 8.06 -2.91 -0.02 -0.31 16 46 H 0.12 -1.06 7.96 -2.38 -0.02 -1.08 16 47 H 0.40 -3.93 8.74 -74.06 -0.65 -4.58 16 48 H -0.27 0.38 7.11 99.48 0.71 1.09 16 49 H -0.30 -1.31 7.11 99.48 0.71 -0.60 16 50 H 0.15 -0.49 6.24 -2.91 -0.02 -0.51 16 51 H 0.10 -0.55 7.61 -2.38 -0.02 -0.57 16 52 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 53 H 0.14 -0.42 6.72 -2.91 -0.02 -0.44 16 54 H 0.14 -0.11 6.30 -2.91 -0.02 -0.13 16 Total: 0.00 -27.04 451.61 0.30 -26.74 By element: Atomic # 1 Polarization: -15.21 SS G_CDS: -0.91 Total: -16.12 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 4.84 Total: 8.69 kcal Atomic # 7 Polarization: -0.31 SS G_CDS: -2.35 Total: -2.67 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -3.48 Total: -16.10 kcal Atomic # 14 Polarization: -2.74 SS G_CDS: 2.20 Total: -0.54 kcal Total: -27.04 0.30 -26.74 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100430_13259648.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.303 kcal (2) G-P(sol) polarization free energy of solvation -27.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds