Wall clock time and date at job start Sun Mar 7 2021 05:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35902 * 116.99952 * 2 1 4 4 C 1.38731 * 120.05441 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.94104 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.05776 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.94389 * 180.02562 * 6 5 4 8 8 H 1.08992 * 112.90980 * 11.25238 * 7 6 5 9 9 C 1.53784 * 113.61502 * 142.50697 * 7 6 5 10 10 C 1.53782 * 87.08329 * 139.98017 * 9 7 6 11 11 H 1.08995 * 113.68940 * 89.12963 * 10 9 7 12 12 N 1.46498 * 113.61404 * 220.01655 * 10 9 7 13 13 C 1.34772 * 120.00382 * 252.49736 * 12 10 9 14 14 O 1.21627 * 119.99566 * 0.02562 * 13 12 10 15 15 C 1.47259 * 120.00142 * 179.97438 * 13 12 10 16 16 C 1.36772 * 126.94443 * 359.97438 * 15 13 12 17 17 N 1.34657 * 108.39581 * 180.02562 * 16 15 13 18 18 C 1.46506 * 124.84705 * 179.97438 * 17 16 15 19 19 C 1.36446 * 110.30092 * 0.26658 * 17 16 15 20 20 C 1.50701 * 125.57244 * 179.70990 * 19 17 16 21 21 O 1.42902 * 109.47029 * 29.99902 * 20 19 17 22 22 Si 1.86290 * 109.47133 * 150.00217 * 20 19 17 23 23 C 1.34489 * 108.85661 * 359.55537 * 19 17 16 24 24 C 1.53780 * 87.07920 * 334.56463 * 10 9 7 25 25 C 1.38267 * 120.11053 * 0.27880 * 6 5 4 26 26 C 1.38147 * 120.05606 * 359.45089 * 25 6 5 27 27 H 1.08995 * 109.47004 * 300.00338 * 1 2 3 28 28 H 1.08992 * 109.46887 * 60.00329 * 1 2 3 29 29 H 1.09001 * 109.47019 * 180.02562 * 1 2 3 30 30 H 1.07996 * 120.02773 * 359.94511 * 4 3 2 31 31 H 1.08004 * 119.96702 * 180.02562 * 5 4 3 32 32 H 1.09001 * 113.61064 * 25.43134 * 9 7 6 33 33 H 1.08997 * 113.61346 * 254.53101 * 9 7 6 34 34 H 0.97008 * 120.00037 * 72.50150 * 12 10 9 35 35 H 1.07999 * 125.80087 * 0.02562 * 16 15 13 36 36 H 1.08999 * 109.46871 * 90.02929 * 18 17 16 37 37 H 1.08994 * 109.46947 * 210.02637 * 18 17 16 38 38 H 1.08997 * 109.47271 * 330.03153 * 18 17 16 39 39 H 1.09002 * 109.47143 * 270.00314 * 20 19 17 40 40 H 0.96696 * 113.99693 * 180.02562 * 21 20 19 41 41 H 1.48502 * 110.00159 * 299.99839 * 22 20 19 42 42 H 1.48500 * 110.00560 * 61.31929 * 22 20 19 43 43 H 1.07998 * 126.83639 * 180.12508 * 23 19 17 44 44 H 1.09009 * 113.60895 * 139.97700 * 24 10 9 45 45 H 1.08992 * 113.61784 * 270.87946 * 24 10 9 46 46 H 1.08000 * 119.97098 * 179.72401 * 25 6 5 47 47 H 1.08004 * 120.02728 * 180.27041 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0561 2.5170 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 3.9861 5.0185 -0.0028 8 1 5.0560 4.9494 -0.1990 9 6 3.2693 6.0743 -0.8609 10 6 3.5929 7.0848 0.2523 11 1 4.5550 7.5814 0.1269 12 7 2.5013 8.0214 0.5302 13 6 2.6049 9.3096 0.1480 14 8 3.6046 9.6945 -0.4280 15 6 1.5073 10.2509 0.4268 16 6 0.3269 9.9732 1.0595 17 7 -0.4024 11.1039 1.1137 18 6 -1.7330 11.2136 1.7170 19 6 0.2720 12.1312 0.5209 20 6 -0.2292 13.5458 0.3843 21 8 -1.0931 13.8530 1.4804 22 14 1.2171 14.7199 0.3855 23 6 1.4587 11.6758 0.0815 24 6 3.6384 5.8881 1.2170 25 6 1.9211 3.6047 0.0042 26 6 1.2915 2.3751 -0.0009 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 4.0209 0.3800 -0.0001 31 1 5.1346 2.5750 -0.0019 32 1 2.2027 5.8865 -0.9835 33 1 3.7738 6.2867 -1.8035 34 1 1.7038 7.7144 0.9893 35 1 0.0302 9.0107 1.4492 36 1 -1.6338 11.4747 2.7706 37 1 -2.3023 11.9879 1.2028 38 1 -2.2528 10.2598 1.6265 39 1 -0.7791 13.6477 -0.5513 40 1 -1.4540 14.7498 1.4573 41 1 1.9751 14.5909 1.6560 42 1 2.1066 14.4315 -0.7681 43 1 2.2219 12.2447 -0.4287 44 1 4.4411 5.9501 1.9520 45 1 2.6728 5.6494 1.6625 46 1 1.3342 4.5113 0.0083 47 1 0.2129 2.3201 -0.0007 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100430_13287730.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:20:02 Heat of formation + Delta-G solvation = 1.629782 kcal Electronic energy + Delta-G solvation = -28731.324359 eV Core-core repulsion = 24654.878458 eV Total energy + Delta-G solvation = -4076.445901 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.54971 -41.52429 -40.68403 -39.51060 -37.82136 -37.66063 -34.71132 -33.78415 -32.05405 -31.76935 -30.96950 -28.34782 -27.69766 -26.68991 -26.42974 -25.44937 -23.95930 -23.49152 -22.11963 -21.33297 -20.62859 -20.11043 -19.17555 -18.57213 -18.30250 -17.71801 -17.12691 -16.94144 -16.77327 -16.66602 -16.15513 -15.91134 -15.79673 -15.53766 -15.37098 -15.18987 -14.93651 -14.63921 -14.50880 -14.36569 -14.11290 -13.77207 -13.46212 -13.38749 -13.31534 -13.25214 -13.14029 -13.00951 -12.77356 -12.76153 -12.37512 -12.12172 -12.05337 -11.64078 -11.56938 -11.44013 -11.05476 -10.63241 -10.14640 -9.96597 -9.71700 -9.29253 -9.02471 -5.04708 0.37837 0.40691 0.61958 0.91949 1.36770 1.63347 1.89021 2.05462 2.21748 2.37825 2.41001 2.72747 3.19815 3.47355 3.66596 3.70580 3.73120 3.76551 3.86673 3.88697 3.94737 3.99921 4.12301 4.25467 4.28620 4.31184 4.35159 4.39159 4.41151 4.49084 4.51569 4.61459 4.68137 4.71067 4.71893 4.74516 4.80882 4.83478 4.87254 4.96961 5.03032 5.10394 5.18260 5.33614 5.39590 5.45632 5.57087 5.71683 5.82340 5.85564 6.14565 6.43634 6.57389 6.82821 7.25232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C 0.103 3.897 4 C -0.168 4.168 5 C -0.082 4.082 6 C -0.110 4.110 7 C -0.060 4.060 8 H 0.105 0.895 9 C -0.141 4.141 10 C 0.117 3.883 11 H 0.092 0.908 12 N -0.701 5.701 13 C 0.588 3.412 14 O -0.600 6.600 15 C -0.262 4.262 16 C 0.076 3.924 17 N -0.421 5.421 18 C 0.070 3.930 19 C 0.022 3.978 20 C -0.040 4.040 21 O -0.557 6.557 22 Si 0.799 3.201 23 C -0.189 4.189 24 C -0.122 4.122 25 C -0.078 4.078 26 C -0.210 4.210 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.130 0.870 31 H 0.143 0.857 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.414 0.586 35 H 0.217 0.783 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.410 0.590 41 H -0.312 1.312 42 H -0.303 1.303 43 H 0.124 0.876 44 H 0.081 0.919 45 H 0.104 0.896 46 H 0.144 0.856 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.556 1.431 2.972 11.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.059 3.941 4 C -0.187 4.187 5 C -0.099 4.099 6 C -0.110 4.110 7 C -0.078 4.078 8 H 0.123 0.877 9 C -0.180 4.180 10 C 0.012 3.988 11 H 0.110 0.890 12 N -0.352 5.352 13 C 0.378 3.622 14 O -0.482 6.482 15 C -0.272 4.272 16 C -0.061 4.061 17 N -0.095 5.095 18 C -0.069 4.069 19 C -0.088 4.088 20 C -0.150 4.150 21 O -0.368 6.368 22 Si 0.706 3.294 23 C -0.214 4.214 24 C -0.160 4.160 25 C -0.096 4.096 26 C -0.229 4.229 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.132 0.868 30 H 0.148 0.852 31 H 0.160 0.840 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.252 0.748 35 H 0.234 0.766 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.263 0.737 41 H -0.241 1.241 42 H -0.231 1.231 43 H 0.142 0.858 44 H 0.100 0.900 45 H 0.122 0.878 46 H 0.162 0.838 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.160 1.056 2.941 9.678 hybrid contribution -0.030 -0.679 -0.130 0.692 sum -9.189 0.377 2.811 9.617 Atomic orbital electron populations 1.23297 0.76620 1.05366 1.02184 1.86049 1.23340 1.27377 1.88819 1.19331 0.92837 0.84764 0.97217 1.20647 0.91777 0.99316 1.06921 1.21106 1.00791 0.90779 0.97268 1.19669 0.93671 0.94433 1.03221 1.21204 0.99986 0.89610 0.97041 0.87669 1.23609 1.01982 0.94638 0.97749 1.22505 0.91172 0.87771 0.97355 0.88970 1.45624 1.21556 1.07860 1.60134 1.17684 0.85288 0.82231 0.76999 1.90740 1.33748 1.78887 1.44870 1.20315 0.97699 0.94480 1.14710 1.22487 0.90564 0.92714 1.00384 1.43800 1.16430 1.06823 1.42399 1.22435 0.79177 1.05659 0.99638 1.20152 0.93682 0.90709 1.04307 1.24275 1.03875 0.93245 0.93629 1.86368 1.65533 1.39343 1.45566 0.94957 0.75384 0.83627 0.75409 1.21637 0.97136 0.94833 1.07747 1.23416 1.03858 0.92404 0.96296 1.21020 0.94078 0.97474 0.97043 1.21456 1.00958 0.92045 1.08402 0.91632 0.91826 0.86832 0.85161 0.83953 0.88332 0.91941 0.74819 0.76650 0.90096 0.88062 0.87510 0.87694 0.73684 1.24089 1.23109 0.85848 0.90031 0.87802 0.83839 0.83827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.34 -1.84 10.50 -92.45 -0.97 -2.81 16 3 C 0.10 0.52 6.69 22.50 0.15 0.67 16 4 C -0.17 -0.76 9.99 22.37 0.22 -0.54 16 5 C -0.08 -0.15 9.70 22.25 0.22 0.06 16 6 C -0.11 -0.05 5.29 -19.85 -0.11 -0.15 16 7 C -0.06 0.09 3.98 -11.01 -0.04 0.04 16 8 H 0.11 -0.20 8.09 -2.39 -0.02 -0.22 16 9 C -0.14 -0.03 7.25 31.12 0.23 0.19 16 10 C 0.12 0.23 4.24 45.52 0.19 0.43 16 11 H 0.09 0.69 7.46 -2.39 -0.02 0.68 16 12 N -0.70 -1.38 5.34 -443.47 -2.37 -3.75 16 13 C 0.59 6.76 7.81 86.62 0.68 7.44 16 14 O -0.60 -13.04 16.57 -4.12 -0.07 -13.11 16 15 C -0.26 -2.31 6.29 -19.04 -0.12 -2.43 16 16 C 0.08 -0.01 10.83 83.92 0.91 0.90 16 17 N -0.42 -0.26 3.09 -533.24 -1.65 -1.90 16 18 C 0.07 -0.48 9.82 127.77 1.25 0.77 16 19 C 0.02 0.11 6.17 40.98 0.25 0.37 16 20 C -0.04 0.08 2.86 71.24 0.20 0.29 16 21 O -0.56 3.32 10.29 -148.98 -1.53 1.79 16 22 Si 0.80 0.02 31.22 68.60 2.14 2.16 16 23 C -0.19 -2.22 9.49 23.62 0.22 -1.99 16 24 C -0.12 0.36 7.30 31.12 0.23 0.59 16 25 C -0.08 0.05 8.59 22.26 0.19 0.24 16 26 C -0.21 -0.22 9.04 22.37 0.20 -0.02 16 27 H 0.07 -0.32 7.66 -2.39 -0.02 -0.34 16 28 H 0.06 -0.28 7.66 -2.39 -0.02 -0.30 16 29 H 0.11 -0.65 8.14 -2.39 -0.02 -0.67 16 30 H 0.13 0.44 8.06 -2.91 -0.02 0.41 16 31 H 0.14 -0.24 8.05 -2.91 -0.02 -0.27 16 32 H 0.10 -0.20 6.32 -2.39 -0.02 -0.21 16 33 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.41 -2.41 7.67 -92.70 -0.71 -3.12 16 35 H 0.22 -2.24 7.45 -2.91 -0.02 -2.26 16 36 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 37 H 0.10 -0.74 6.71 -2.39 -0.02 -0.76 16 38 H 0.11 -1.29 8.13 -2.39 -0.02 -1.31 16 39 H 0.11 -0.69 7.96 -2.39 -0.02 -0.71 16 40 H 0.41 -6.64 8.74 -74.06 -0.65 -7.29 16 41 H -0.31 -3.10 7.11 99.48 0.71 -2.39 16 42 H -0.30 -2.50 6.89 99.48 0.69 -1.82 16 43 H 0.12 1.91 6.74 -2.91 -0.02 1.89 16 44 H 0.08 -0.23 8.14 -2.38 -0.02 -0.25 16 45 H 0.10 -0.62 7.69 -2.39 -0.02 -0.64 16 46 H 0.14 -0.78 6.67 -2.91 -0.02 -0.80 16 47 H 0.14 -0.46 6.30 -2.91 -0.02 -0.48 16 Total: 0.00 -32.15 386.07 1.22 -30.93 By element: Atomic # 1 Polarization: -20.88 SS G_CDS: -0.33 Total: -21.22 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 5.99 Total: 7.91 kcal Atomic # 7 Polarization: -1.64 SS G_CDS: -4.02 Total: -5.65 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -2.57 Total: -14.14 kcal Atomic # 14 Polarization: 0.02 SS G_CDS: 2.14 Total: 2.16 kcal Total: -32.15 1.22 -30.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100430_13287730.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.559 kcal (2) G-P(sol) polarization free energy of solvation -32.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds