Wall clock time and date at job start Sun Mar 7 2021 05:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35900 * 116.99960 * 2 1 4 4 C 1.38735 * 120.06000 * 179.97438 * 3 2 1 5 5 C 1.38141 * 119.94791 * 180.02562 * 4 3 2 6 6 C 1.38262 * 120.05370 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.94183 * 179.97438 * 6 5 4 8 8 H 1.08994 * 112.91064 * 348.75368 * 7 6 5 9 9 C 1.53787 * 113.61150 * 120.00533 * 7 6 5 10 10 C 1.53779 * 87.07963 * 139.98062 * 9 7 6 11 11 H 1.09006 * 113.61280 * 89.11401 * 10 9 7 12 12 N 1.46508 * 113.61245 * 219.93163 * 10 9 7 13 13 C 1.34773 * 119.99594 * 205.00346 * 12 10 9 14 14 O 1.21545 * 120.00500 * 359.97438 * 13 12 10 15 15 C 1.47842 * 119.99342 * 180.02562 * 13 12 10 16 16 C 1.39520 * 120.56363 * 359.97438 * 15 13 12 17 17 N 1.31693 * 120.56793 * 180.02562 * 16 15 13 18 18 C 1.31927 * 121.88075 * 359.97438 * 17 16 15 19 19 C 1.38353 * 121.07929 * 0.02562 * 18 17 16 20 20 C 1.50700 * 120.34660 * 180.02562 * 19 18 17 21 21 O 1.42897 * 109.47138 * 244.99402 * 20 19 18 22 22 Si 1.86298 * 109.47089 * 4.99749 * 20 19 18 23 23 C 1.38352 * 119.30181 * 359.71387 * 19 18 17 24 24 C 1.53779 * 87.08402 * 334.56577 * 10 9 7 25 25 C 1.38270 * 120.11338 * 0.25497 * 6 5 4 26 26 C 1.38144 * 120.05105 * 359.44870 * 25 6 5 27 27 H 1.09001 * 109.47354 * 60.00229 * 1 2 3 28 28 H 1.09002 * 109.46924 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47472 * 300.00120 * 1 2 3 30 30 H 1.08004 * 120.02213 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.97048 * 179.97438 * 5 4 3 32 32 H 1.08997 * 113.61028 * 254.53022 * 9 7 6 33 33 H 1.08998 * 113.61447 * 25.34557 * 9 7 6 34 34 H 0.96996 * 119.99627 * 25.00004 * 12 10 9 35 35 H 1.07999 * 119.71385 * 0.02880 * 16 15 13 36 36 H 1.08001 * 119.45690 * 179.97438 * 18 17 16 37 37 H 1.09000 * 109.46908 * 124.99539 * 20 19 18 38 38 H 0.96696 * 114.00190 * 179.97438 * 21 20 19 39 39 H 1.48492 * 110.00183 * 299.99731 * 22 20 19 40 40 H 1.48501 * 110.00320 * 61.32062 * 22 20 19 41 41 H 1.08007 * 120.85814 * 180.29735 * 23 19 18 42 42 H 1.09002 * 113.61557 * 270.88569 * 24 10 9 43 43 H 1.09004 * 113.61501 * 139.97990 * 24 10 9 44 44 H 1.08000 * 119.97207 * 179.70289 * 25 6 5 45 45 H 1.08006 * 120.02385 * 180.25520 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2850 0.0005 5 6 4.0560 2.5170 0.0011 6 6 3.3018 3.6758 0.0016 7 6 3.9860 5.0186 0.0028 8 1 5.0559 4.9495 0.1989 9 6 3.6382 5.8882 -1.2170 10 6 3.5927 7.0848 -0.2522 11 1 4.5552 7.5805 -0.1258 12 7 2.5021 8.0225 -0.5312 13 6 2.6066 9.3106 -0.1488 14 8 3.6054 9.6943 0.4278 15 6 1.5058 10.2566 -0.4299 16 6 0.3539 9.8286 -1.0906 17 7 -0.6265 10.6714 -1.3415 18 6 -0.5638 11.9396 -0.9836 19 6 0.5442 12.4419 -0.3247 20 6 0.5981 13.8934 0.0770 21 8 1.6438 14.5485 -0.6436 22 14 -1.0311 14.7073 -0.3157 23 6 1.5994 11.5961 -0.0326 24 6 3.2693 6.0744 0.8610 25 6 1.9209 3.6048 0.0069 26 6 1.2915 2.3751 0.0002 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 4.0208 0.3800 0.0014 31 1 5.1345 2.5751 0.0019 32 1 4.4406 5.9501 -1.9520 33 1 2.6730 5.6484 -1.6632 34 1 1.7050 7.7161 -0.9911 35 1 0.2655 8.7974 -1.3989 36 1 -1.3906 12.5967 -1.2096 37 1 0.7926 13.9673 1.1469 38 1 1.7363 15.4882 -0.4350 39 1 -1.3079 14.6133 -1.7716 40 1 -2.1225 14.0556 0.4519 41 1 2.4745 11.9604 0.4851 42 1 2.2026 5.8865 0.9838 43 1 3.7739 6.2867 1.8036 44 1 1.3341 4.5114 0.0122 45 1 0.2128 2.3201 0.0002 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100430_13287814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:20:16 Heat of formation + Delta-G solvation = -6.656393 kcal Electronic energy + Delta-G solvation = -27978.645142 eV Core-core repulsion = 23929.151403 eV Total energy + Delta-G solvation = -4049.493738 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.09723 -41.43608 -40.67042 -39.62038 -37.87377 -37.84792 -35.00085 -33.98227 -33.13839 -32.04392 -31.10754 -28.32697 -27.34950 -26.70177 -26.65033 -24.97402 -23.86721 -23.65744 -22.35018 -21.67715 -20.46830 -19.19077 -19.03322 -18.56167 -18.31265 -18.04879 -17.44068 -16.99721 -16.67575 -16.42425 -16.33301 -15.96601 -15.85486 -15.44982 -15.33229 -14.96127 -14.74302 -14.63099 -14.42570 -14.36787 -14.28395 -14.11699 -13.84606 -13.46229 -13.26782 -13.02234 -12.78395 -12.64227 -12.41483 -12.18934 -12.14007 -11.70514 -11.57825 -11.48200 -11.36618 -11.18817 -10.83008 -10.60169 -10.26745 -10.13914 -9.96813 -9.02868 -4.97670 -0.73936 -0.15430 0.37681 0.40631 1.21943 1.52928 1.63899 1.88538 1.92932 2.37281 2.47253 2.72452 2.92265 3.18179 3.39285 3.46888 3.56433 3.58421 3.68709 3.70935 3.73586 3.87448 3.94205 3.98378 4.00006 4.12207 4.18252 4.25591 4.33937 4.40748 4.42913 4.48457 4.59943 4.69066 4.70666 4.71622 4.74519 4.79700 4.82790 4.95557 5.03522 5.06668 5.13268 5.16665 5.31807 5.39128 5.49199 5.70848 5.82602 6.30842 6.43026 6.46504 6.84432 6.96944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C 0.103 3.897 4 C -0.168 4.168 5 C -0.081 4.081 6 C -0.110 4.110 7 C -0.060 4.060 8 H 0.108 0.892 9 C -0.125 4.125 10 C 0.118 3.882 11 H 0.103 0.897 12 N -0.697 5.697 13 C 0.568 3.432 14 O -0.570 6.570 15 C -0.193 4.193 16 C 0.144 3.856 17 N -0.496 5.496 18 C 0.109 3.891 19 C -0.141 4.141 20 C -0.081 4.081 21 O -0.565 6.565 22 Si 0.780 3.220 23 C 0.001 3.999 24 C -0.142 4.142 25 C -0.079 4.079 26 C -0.212 4.212 27 H 0.064 0.936 28 H 0.113 0.887 29 H 0.063 0.937 30 H 0.130 0.870 31 H 0.144 0.856 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.415 0.585 35 H 0.197 0.803 36 H 0.158 0.842 37 H 0.100 0.900 38 H 0.407 0.593 39 H -0.288 1.288 40 H -0.281 1.281 41 H 0.148 0.852 42 H 0.097 0.903 43 H 0.067 0.933 44 H 0.144 0.856 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.247 2.070 0.439 3.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.256 6.256 3 C 0.058 3.942 4 C -0.187 4.187 5 C -0.098 4.098 6 C -0.110 4.110 7 C -0.079 4.079 8 H 0.127 0.873 9 C -0.163 4.163 10 C 0.013 3.987 11 H 0.121 0.879 12 N -0.348 5.348 13 C 0.354 3.646 14 O -0.450 6.450 15 C -0.198 4.198 16 C -0.015 4.015 17 N -0.204 5.204 18 C -0.047 4.047 19 C -0.143 4.143 20 C -0.190 4.190 21 O -0.375 6.375 22 Si 0.685 3.315 23 C -0.025 4.025 24 C -0.181 4.181 25 C -0.097 4.097 26 C -0.230 4.230 27 H 0.083 0.917 28 H 0.132 0.868 29 H 0.082 0.918 30 H 0.148 0.852 31 H 0.162 0.838 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.254 0.746 35 H 0.214 0.786 36 H 0.174 0.826 37 H 0.118 0.882 38 H 0.259 0.741 39 H -0.216 1.216 40 H -0.207 1.207 41 H 0.166 0.834 42 H 0.116 0.884 43 H 0.086 0.914 44 H 0.161 0.839 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.933 1.134 -0.159 4.097 hybrid contribution 0.511 -0.390 0.382 0.748 sum -3.422 0.744 0.223 3.509 Atomic orbital electron populations 1.23291 0.76660 1.05353 1.02143 1.86046 1.23293 1.27433 1.88823 1.19346 0.92891 0.84728 0.97246 1.20660 0.91703 0.99420 1.06912 1.21118 1.00842 0.90720 0.97164 1.19687 0.93550 0.94603 1.03168 1.21220 1.00143 0.89476 0.97037 0.87343 1.23440 1.03964 0.92465 0.96431 1.22617 0.91105 0.87610 0.97332 0.87917 1.45792 1.21918 1.07903 1.59222 1.18099 0.85651 0.82710 0.78091 1.90790 1.32569 1.78426 1.43173 1.21113 0.97499 0.95550 1.05611 1.23496 0.86609 1.00595 0.90803 1.67731 1.29754 1.03675 1.19230 1.22907 0.96755 0.92663 0.92348 1.20698 0.95414 0.97220 1.00986 1.24843 1.04112 0.90360 0.99726 1.86439 1.54366 1.29424 1.67301 0.93855 0.71771 0.88389 0.77531 1.21729 0.97402 0.91240 0.92150 1.23621 1.02047 0.94501 0.97898 1.21027 0.94190 0.97400 0.97090 1.21459 1.00915 0.92174 1.08484 0.91716 0.86830 0.91847 0.85183 0.83784 0.89746 0.88002 0.74633 0.78608 0.82554 0.88214 0.74072 1.21565 1.20740 0.83438 0.88450 0.91382 0.83856 0.84035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.34 -1.83 10.50 -92.43 -0.97 -2.80 16 3 C 0.10 0.49 6.69 22.51 0.15 0.64 16 4 C -0.17 -0.66 9.99 22.37 0.22 -0.43 16 5 C -0.08 -0.06 9.70 22.25 0.22 0.16 16 6 C -0.11 0.11 5.29 -19.85 -0.11 0.00 16 7 C -0.06 0.24 3.98 -11.01 -0.04 0.19 16 8 H 0.11 -0.51 8.09 -2.39 -0.02 -0.53 16 9 C -0.13 0.70 7.30 31.12 0.23 0.93 16 10 C 0.12 -0.25 4.24 45.51 0.19 -0.06 16 11 H 0.10 0.21 7.46 -2.38 -0.02 0.19 16 12 N -0.70 1.63 5.31 -442.91 -2.35 -0.72 16 13 C 0.57 2.82 7.78 86.79 0.68 3.49 16 14 O -0.57 -7.47 16.02 -3.86 -0.06 -7.53 16 15 C -0.19 -0.74 5.89 -19.99 -0.12 -0.86 16 16 C 0.14 0.12 10.71 85.02 0.91 1.03 16 17 N -0.50 -2.69 10.35 -194.76 -2.01 -4.71 16 18 C 0.11 0.57 9.84 84.71 0.83 1.40 16 19 C -0.14 -0.58 5.38 -19.81 -0.11 -0.69 16 20 C -0.08 0.15 2.81 71.24 0.20 0.35 16 21 O -0.56 0.57 12.82 -148.98 -1.91 -1.34 16 22 Si 0.78 -3.38 29.88 68.60 2.05 -1.33 16 23 C 0.00 0.01 9.38 22.73 0.21 0.22 16 24 C -0.14 0.43 7.25 31.12 0.23 0.66 16 25 C -0.08 0.11 8.62 22.26 0.19 0.30 16 26 C -0.21 -0.19 9.04 22.36 0.20 0.01 16 27 H 0.06 -0.29 7.66 -2.39 -0.02 -0.31 16 28 H 0.11 -0.62 8.14 -2.39 -0.02 -0.64 16 29 H 0.06 -0.27 7.66 -2.39 -0.02 -0.28 16 30 H 0.13 0.36 8.06 -2.91 -0.02 0.34 16 31 H 0.14 -0.45 8.05 -2.91 -0.02 -0.48 16 32 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 33 H 0.10 -0.79 7.71 -2.39 -0.02 -0.81 16 34 H 0.42 -3.61 6.80 -92.71 -0.63 -4.24 16 35 H 0.20 -1.52 6.42 -2.91 -0.02 -1.54 16 36 H 0.16 0.53 4.87 -2.91 -0.01 0.52 16 37 H 0.10 -0.58 7.96 -2.39 -0.02 -0.60 16 38 H 0.41 -4.80 8.74 -74.06 -0.65 -5.45 16 39 H -0.29 -0.75 7.05 99.48 0.70 -0.05 16 40 H -0.28 -0.17 7.11 99.48 0.71 0.53 16 41 H 0.15 0.93 7.74 -2.91 -0.02 0.91 16 42 H 0.10 -0.45 6.29 -2.39 -0.02 -0.47 16 43 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 44 H 0.14 -0.88 6.63 -2.91 -0.02 -0.90 16 45 H 0.14 -0.41 6.30 -2.91 -0.02 -0.43 16 Total: 0.00 -24.56 373.61 -0.25 -24.81 By element: Atomic # 1 Polarization: -14.59 SS G_CDS: -0.19 Total: -14.78 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 5.20 Total: 8.41 kcal Atomic # 7 Polarization: -1.06 SS G_CDS: -4.37 Total: -5.43 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -2.94 Total: -11.67 kcal Atomic # 14 Polarization: -3.38 SS G_CDS: 2.05 Total: -1.33 kcal Total: -24.56 -0.25 -24.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100430_13287814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.151 kcal (2) G-P(sol) polarization free energy of solvation -24.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds