Wall clock time and date at job start Sun Mar 7 2021 05:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35895 * 117.00022 * 2 1 4 4 C 1.38737 * 120.05312 * 179.97438 * 3 2 1 5 5 C 1.38141 * 119.94079 * 179.97438 * 4 3 2 6 6 C 1.38269 * 120.05690 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.94114 * 180.02562 * 6 5 4 8 8 H 1.08999 * 112.84907 * 348.80556 * 7 6 5 9 9 C 1.53782 * 113.61290 * 120.00210 * 7 6 5 10 10 C 1.53775 * 87.08074 * 139.97692 * 9 7 6 11 11 H 1.09008 * 113.61520 * 89.19904 * 10 9 7 12 12 N 1.46501 * 113.61822 * 220.02047 * 10 9 7 13 13 C 1.34780 * 119.99857 * 205.00369 * 12 10 9 14 14 O 1.21612 * 120.00212 * 359.97438 * 13 12 10 15 15 C 1.47376 * 119.99580 * 179.97438 * 13 12 10 16 16 C 1.36417 * 127.19050 * 179.70919 * 15 13 12 17 17 C 1.50696 * 125.80043 * 0.02562 * 16 15 13 18 18 O 1.33657 * 108.39585 * 179.89637 * 16 15 13 19 19 C 1.34212 * 110.91121 * 0.37991 * 18 16 15 20 20 C 1.50695 * 125.44288 * 179.76122 * 19 18 16 21 21 O 1.42902 * 109.47139 * 120.00139 * 20 19 18 22 22 Si 1.86303 * 109.46912 * 0.02562 * 20 19 18 23 23 C 1.34180 * 109.12100 * 359.76907 * 19 18 16 24 24 C 1.53776 * 113.61107 * 217.49664 * 7 6 5 25 25 C 1.38263 * 120.11156 * 0.27879 * 6 5 4 26 26 C 1.38143 * 120.05579 * 359.44512 * 25 6 5 27 27 H 1.08997 * 109.47056 * 300.00350 * 1 2 3 28 28 H 1.08999 * 109.46928 * 59.99960 * 1 2 3 29 29 H 1.08998 * 109.46951 * 179.97438 * 1 2 3 30 30 H 1.07994 * 120.02884 * 359.96129 * 4 3 2 31 31 H 1.07998 * 119.97174 * 179.97438 * 5 4 3 32 32 H 1.08999 * 113.61626 * 254.53142 * 9 7 6 33 33 H 1.09005 * 113.61073 * 25.42887 * 9 7 6 34 34 H 0.97000 * 120.00005 * 24.99517 * 12 10 9 35 35 H 1.09000 * 109.47213 * 90.00596 * 17 16 15 36 36 H 1.09004 * 109.47030 * 210.00472 * 17 16 15 37 37 H 1.08998 * 109.47125 * 330.00021 * 17 16 15 38 38 H 1.09001 * 109.47438 * 240.00986 * 20 19 18 39 39 H 0.96693 * 113.99826 * 180.02562 * 21 20 19 40 40 H 1.48494 * 110.00083 * 59.99536 * 22 20 19 41 41 H 1.48498 * 110.00104 * 181.31606 * 22 20 19 42 42 H 1.08004 * 127.01989 * 179.97438 * 23 19 18 43 43 H 1.08996 * 113.61717 * 334.57125 * 24 7 6 44 44 H 1.09006 * 113.61383 * 105.47248 * 24 7 6 45 45 H 1.08001 * 119.97275 * 179.72293 * 25 6 5 46 46 H 1.07992 * 120.02923 * 180.27343 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0561 2.5168 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 5.0563 4.9484 0.1928 9 6 3.6387 5.8858 -1.2241 10 6 3.5931 7.0842 -0.2615 11 1 4.5553 7.5810 -0.1369 12 7 2.5014 8.0203 -0.5410 13 6 2.6052 9.3093 -0.1611 14 8 3.6048 9.6951 0.4142 15 6 1.5072 10.2511 -0.4427 16 6 1.4545 11.5760 -0.1219 17 6 2.5279 12.3524 0.5964 18 8 0.2902 12.0690 -0.5553 19 6 -0.4427 11.1144 -1.1494 20 6 -1.8107 11.3102 -1.7503 21 8 -1.7709 10.9852 -3.1413 22 14 -2.3317 13.0868 -1.5428 23 6 0.2371 9.9579 -1.1227 24 6 3.2695 6.0757 0.8534 25 6 1.9212 3.6047 0.0031 26 6 1.2916 2.3751 -0.0021 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 4.0209 0.3798 0.0016 31 1 5.1346 2.5749 0.0008 32 1 4.4412 5.9465 -1.9592 33 1 2.6729 5.6463 -1.6692 34 1 1.7040 7.7125 -0.9996 35 1 3.2196 12.7753 -0.1321 36 1 2.0706 13.1567 1.1727 37 1 3.0698 11.6868 1.2683 38 1 -2.5257 10.6603 -1.2456 39 1 -2.6191 11.0889 -3.5938 40 1 -1.3649 13.9827 -2.2267 41 1 -3.6925 13.2858 -2.1030 42 1 -0.0835 9.0058 -1.5194 43 1 2.2028 5.8882 0.9764 44 1 3.7740 6.2898 1.7957 45 1 1.3343 4.5113 0.0064 46 1 0.2130 2.3202 -0.0028 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_15100430_13308374.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:20:21 Heat of formation + Delta-G solvation = -33.066046 kcal Electronic energy + Delta-G solvation = -28970.459844 eV Core-core repulsion = 24794.790756 eV Total energy + Delta-G solvation = -4175.669088 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.150 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.68556 -41.53862 -40.67650 -39.49374 -38.16802 -37.78799 -34.68701 -33.88227 -33.13324 -32.03609 -31.14266 -29.48646 -28.36234 -26.73507 -26.37512 -25.28927 -24.09859 -23.58787 -22.52368 -21.63461 -21.03880 -20.02797 -19.15729 -18.91841 -18.34767 -17.70385 -17.27776 -17.02867 -16.95878 -16.67070 -16.19763 -16.05213 -15.91697 -15.68294 -15.51974 -15.17316 -14.68046 -14.63027 -14.35410 -14.19007 -14.09581 -13.99493 -13.96630 -13.82897 -13.52937 -13.24140 -13.14656 -13.05533 -12.80116 -12.62178 -12.37610 -12.14034 -12.10648 -11.64140 -11.57960 -11.43308 -10.95289 -10.80693 -10.66159 -9.99447 -9.93967 -9.49119 -8.98638 -5.03640 0.34940 0.40229 0.45144 0.84832 1.10252 1.35165 1.65634 1.90440 2.23870 2.34179 2.40536 2.75661 3.17584 3.40759 3.45187 3.66912 3.70833 3.76728 3.80035 3.86254 3.92356 3.96588 4.08946 4.11868 4.17450 4.19562 4.21998 4.38699 4.44822 4.47384 4.53294 4.59644 4.63204 4.66071 4.68884 4.72672 4.79033 4.86270 4.95035 5.00012 5.09162 5.13876 5.19914 5.26869 5.36288 5.42014 5.58409 5.71974 5.81544 5.98805 6.20554 6.44706 6.56018 7.29614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.123 3.877 4 C -0.149 4.149 5 C -0.074 4.074 6 C -0.107 4.107 7 C -0.065 4.065 8 H 0.103 0.897 9 C -0.137 4.137 10 C 0.124 3.876 11 H 0.119 0.881 12 N -0.714 5.714 13 C 0.595 3.405 14 O -0.539 6.539 15 C -0.254 4.254 16 C 0.097 3.903 17 C -0.086 4.086 18 O -0.168 6.168 19 C -0.009 4.009 20 C -0.037 4.037 21 O -0.534 6.534 22 Si 0.699 3.301 23 C -0.146 4.146 24 C -0.145 4.145 25 C -0.076 4.076 26 C -0.206 4.206 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.401 0.599 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.389 0.611 40 H -0.252 1.252 41 H -0.252 1.252 42 H 0.157 0.843 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.123 0.877 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.707 -0.549 0.704 4.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.078 3.922 4 C -0.168 4.168 5 C -0.092 4.092 6 C -0.107 4.107 7 C -0.083 4.083 8 H 0.121 0.879 9 C -0.175 4.175 10 C 0.019 3.981 11 H 0.137 0.863 12 N -0.364 5.364 13 C 0.383 3.617 14 O -0.418 6.418 15 C -0.258 4.258 16 C 0.043 3.957 17 C -0.142 4.142 18 O -0.065 6.065 19 C -0.057 4.057 20 C -0.146 4.146 21 O -0.342 6.342 22 Si 0.597 3.403 23 C -0.166 4.166 24 C -0.184 4.184 25 C -0.094 4.094 26 C -0.224 4.224 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.235 0.765 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.130 0.870 38 H 0.115 0.885 39 H 0.238 0.762 40 H -0.175 1.175 41 H -0.176 1.176 42 H 0.174 0.826 43 H 0.106 0.894 44 H 0.095 0.905 45 H 0.141 0.859 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.639 0.450 0.867 3.768 hybrid contribution -1.195 -0.937 -1.385 2.056 sum -4.835 -0.487 -0.518 4.887 Atomic orbital electron populations 1.23079 0.78162 1.04190 1.01376 1.86085 1.21562 1.26924 1.88607 1.19085 0.92449 0.84233 0.96415 1.20466 0.91426 0.98805 1.06085 1.20891 0.99922 0.90916 0.97509 1.19532 0.93320 0.94338 1.03516 1.21245 0.99917 0.90238 0.96940 0.87888 1.23473 1.02997 0.94223 0.96820 1.22558 0.91979 0.87604 0.95982 0.86333 1.45760 1.21121 1.08917 1.60612 1.17189 0.85266 0.81446 0.77763 1.90769 1.31147 1.77729 1.42169 1.21121 0.97923 0.94760 1.12004 1.22907 0.85018 0.92348 0.95384 1.20705 0.93061 1.00313 1.00124 1.83643 1.25613 1.38438 1.58769 1.20926 0.95064 0.86901 1.02839 1.23773 0.92499 1.14113 0.84193 1.86553 1.38204 1.89698 1.19775 0.94422 0.79706 0.74151 0.91980 1.22510 0.92941 0.99200 1.01909 1.23625 1.01495 0.94781 0.98473 1.20760 0.94012 0.96897 0.97775 1.21229 1.00080 0.92328 1.08807 0.92572 0.92599 0.88059 0.85105 0.85209 0.90247 0.89401 0.76470 0.88998 0.89863 0.87033 0.88536 0.76203 1.17534 1.17644 0.82578 0.89378 0.90483 0.85885 0.85479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 9.81 101.05 0.99 0.96 16 2 O -0.32 -0.76 10.50 -19.41 -0.20 -0.97 16 3 C 0.12 0.28 6.69 -39.21 -0.26 0.02 16 4 C -0.15 -0.26 9.99 -39.43 -0.39 -0.65 16 5 C -0.07 -0.05 9.70 -39.61 -0.38 -0.43 16 6 C -0.11 -0.03 5.29 -104.60 -0.55 -0.58 16 7 C -0.06 0.07 3.98 -90.96 -0.36 -0.30 16 8 H 0.10 -0.17 8.09 -51.93 -0.42 -0.59 16 9 C -0.14 0.19 7.30 -25.92 -0.19 0.00 16 10 C 0.12 -0.02 4.24 -67.12 -0.28 -0.30 16 11 H 0.12 0.15 7.46 -51.92 -0.39 -0.24 16 12 N -0.71 -0.24 5.35 -54.10 -0.29 -0.53 16 13 C 0.59 1.85 7.81 -12.54 -0.10 1.75 16 14 O -0.54 -3.09 14.45 5.27 0.08 -3.01 16 15 C -0.25 -0.65 6.31 -103.28 -0.65 -1.30 16 16 C 0.10 0.22 7.37 -34.97 -0.26 -0.03 16 17 C -0.09 -0.03 9.89 36.00 0.36 0.33 16 18 O -0.17 -0.37 8.89 7.65 0.07 -0.30 16 19 C -0.01 -0.01 6.24 -35.74 -0.22 -0.24 16 20 C -0.04 0.03 2.97 36.00 0.11 0.14 16 21 O -0.53 0.07 12.84 -35.23 -0.45 -0.38 16 22 Si 0.70 -0.80 32.08 -169.99 -5.45 -6.25 16 23 C -0.15 -0.17 10.46 -37.45 -0.39 -0.57 16 24 C -0.15 0.09 7.25 -25.92 -0.19 -0.10 16 25 C -0.08 -0.02 8.61 -39.61 -0.34 -0.36 16 26 C -0.21 -0.18 9.04 -39.43 -0.36 -0.54 16 27 H 0.06 -0.11 7.67 -51.93 -0.40 -0.51 16 28 H 0.06 -0.11 7.66 -51.93 -0.40 -0.51 16 29 H 0.10 -0.27 8.14 -51.93 -0.42 -0.69 16 30 H 0.13 0.10 8.06 -52.49 -0.42 -0.32 16 31 H 0.13 -0.16 8.05 -52.49 -0.42 -0.58 16 32 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 33 H 0.09 -0.16 7.71 -51.93 -0.40 -0.56 16 34 H 0.40 -0.69 7.90 -40.82 -0.32 -1.01 16 35 H 0.09 -0.02 8.14 -51.93 -0.42 -0.44 16 36 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 37 H 0.11 0.15 6.49 -51.93 -0.34 -0.19 16 38 H 0.10 -0.34 7.96 -51.93 -0.41 -0.75 16 39 H 0.39 -1.75 8.74 45.56 0.40 -1.35 16 40 H -0.25 -0.73 7.11 56.52 0.40 -0.33 16 41 H -0.25 0.01 7.11 56.52 0.40 0.41 16 42 H 0.16 -0.16 7.74 -52.48 -0.41 -0.57 16 43 H 0.09 -0.08 6.29 -51.93 -0.33 -0.41 16 44 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 45 H 0.12 -0.18 6.64 -52.49 -0.35 -0.53 16 46 H 0.13 -0.11 6.30 -52.49 -0.33 -0.44 16 LS Contribution 384.72 15.07 5.80 5.80 Total: 0.00 -8.77 384.72 -10.19 -18.96 By element: Atomic # 1 Polarization: -4.88 SS G_CDS: -6.25 Total: -11.12 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -3.48 Total: -2.19 kcal Atomic # 7 Polarization: -0.24 SS G_CDS: -0.29 Total: -0.53 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.51 Total: -4.66 kcal Atomic # 14 Polarization: -0.80 SS G_CDS: -5.45 Total: -6.25 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -8.77 -10.19 -18.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100430_13308374.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.107 kcal (2) G-P(sol) polarization free energy of solvation -8.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds