Wall clock time and date at job start Sun Mar 7 2021 05:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35895 * 117.00022 * 2 1 4 4 C 1.38737 * 120.05312 * 179.97438 * 3 2 1 5 5 C 1.38141 * 119.94079 * 179.97438 * 4 3 2 6 6 C 1.38269 * 120.05690 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.94114 * 180.02562 * 6 5 4 8 8 H 1.08999 * 112.84907 * 348.80556 * 7 6 5 9 9 C 1.53782 * 113.61290 * 120.00210 * 7 6 5 10 10 C 1.53775 * 87.08074 * 139.97692 * 9 7 6 11 11 H 1.09008 * 113.61520 * 89.19904 * 10 9 7 12 12 N 1.46501 * 113.61822 * 220.02047 * 10 9 7 13 13 C 1.34780 * 119.99857 * 205.00369 * 12 10 9 14 14 O 1.21612 * 120.00212 * 359.97438 * 13 12 10 15 15 C 1.47376 * 119.99580 * 179.97438 * 13 12 10 16 16 C 1.36417 * 127.19050 * 179.70919 * 15 13 12 17 17 C 1.50696 * 125.80043 * 0.02562 * 16 15 13 18 18 O 1.33657 * 108.39585 * 179.89637 * 16 15 13 19 19 C 1.34212 * 110.91121 * 0.37991 * 18 16 15 20 20 C 1.50695 * 125.44288 * 179.76122 * 19 18 16 21 21 O 1.42902 * 109.47139 * 120.00139 * 20 19 18 22 22 Si 1.86303 * 109.46912 * 0.02562 * 20 19 18 23 23 C 1.34180 * 109.12100 * 359.76907 * 19 18 16 24 24 C 1.53776 * 113.61107 * 217.49664 * 7 6 5 25 25 C 1.38263 * 120.11156 * 0.27879 * 6 5 4 26 26 C 1.38143 * 120.05579 * 359.44512 * 25 6 5 27 27 H 1.08997 * 109.47056 * 300.00350 * 1 2 3 28 28 H 1.08999 * 109.46928 * 59.99960 * 1 2 3 29 29 H 1.08998 * 109.46951 * 179.97438 * 1 2 3 30 30 H 1.07994 * 120.02884 * 359.96129 * 4 3 2 31 31 H 1.07998 * 119.97174 * 179.97438 * 5 4 3 32 32 H 1.08999 * 113.61626 * 254.53142 * 9 7 6 33 33 H 1.09005 * 113.61073 * 25.42887 * 9 7 6 34 34 H 0.97000 * 120.00005 * 24.99517 * 12 10 9 35 35 H 1.09000 * 109.47213 * 90.00596 * 17 16 15 36 36 H 1.09004 * 109.47030 * 210.00472 * 17 16 15 37 37 H 1.08998 * 109.47125 * 330.00021 * 17 16 15 38 38 H 1.09001 * 109.47438 * 240.00986 * 20 19 18 39 39 H 0.96693 * 113.99826 * 180.02562 * 21 20 19 40 40 H 1.48494 * 110.00083 * 59.99536 * 22 20 19 41 41 H 1.48498 * 110.00104 * 181.31606 * 22 20 19 42 42 H 1.08004 * 127.01989 * 179.97438 * 23 19 18 43 43 H 1.08996 * 113.61717 * 334.57125 * 24 7 6 44 44 H 1.09006 * 113.61383 * 105.47248 * 24 7 6 45 45 H 1.08001 * 119.97275 * 179.72293 * 25 6 5 46 46 H 1.07992 * 120.02923 * 180.27343 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0561 2.5168 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 5.0563 4.9484 0.1928 9 6 3.6387 5.8858 -1.2241 10 6 3.5931 7.0842 -0.2615 11 1 4.5553 7.5810 -0.1369 12 7 2.5014 8.0203 -0.5410 13 6 2.6052 9.3093 -0.1611 14 8 3.6048 9.6951 0.4142 15 6 1.5072 10.2511 -0.4427 16 6 1.4545 11.5760 -0.1219 17 6 2.5279 12.3524 0.5964 18 8 0.2902 12.0690 -0.5553 19 6 -0.4427 11.1144 -1.1494 20 6 -1.8107 11.3102 -1.7503 21 8 -1.7709 10.9852 -3.1413 22 14 -2.3317 13.0868 -1.5428 23 6 0.2371 9.9579 -1.1227 24 6 3.2695 6.0757 0.8534 25 6 1.9212 3.6047 0.0031 26 6 1.2916 2.3751 -0.0021 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 4.0209 0.3798 0.0016 31 1 5.1346 2.5749 0.0008 32 1 4.4412 5.9465 -1.9592 33 1 2.6729 5.6463 -1.6692 34 1 1.7040 7.7125 -0.9996 35 1 3.2196 12.7753 -0.1321 36 1 2.0706 13.1567 1.1727 37 1 3.0698 11.6868 1.2683 38 1 -2.5257 10.6603 -1.2456 39 1 -2.6191 11.0889 -3.5938 40 1 -1.3649 13.9827 -2.2267 41 1 -3.6925 13.2858 -2.1030 42 1 -0.0835 9.0058 -1.5194 43 1 2.2028 5.8882 0.9764 44 1 3.7740 6.2898 1.7957 45 1 1.3343 4.5113 0.0064 46 1 0.2130 2.3202 -0.0028 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100430_13308374.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:20:20 Heat of formation + Delta-G solvation = -30.874360 kcal Electronic energy + Delta-G solvation = -28970.364805 eV Core-core repulsion = 24794.790756 eV Total energy + Delta-G solvation = -4175.574049 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.150 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.76720 -41.54998 -40.74975 -39.59420 -38.08646 -37.81640 -34.82010 -33.95802 -33.16884 -32.03691 -31.15227 -29.48037 -28.28787 -26.67206 -26.41110 -25.28585 -24.14924 -23.60650 -22.55915 -21.70419 -21.10084 -20.03866 -19.16410 -18.84814 -18.40286 -17.72846 -17.35360 -17.06486 -17.00606 -16.66231 -16.20758 -16.08609 -15.89012 -15.67559 -15.65438 -15.18813 -14.72428 -14.62368 -14.36552 -14.20510 -14.10899 -14.04800 -13.99230 -13.83105 -13.44674 -13.22903 -13.13637 -12.99508 -12.76228 -12.64965 -12.35217 -12.16281 -12.10180 -11.62432 -11.55358 -11.41683 -11.06367 -10.93875 -10.63589 -10.07433 -9.95792 -9.55848 -9.01616 -4.94979 0.21909 0.38663 0.41792 0.80483 1.17224 1.35588 1.67361 1.93789 2.17305 2.24341 2.38419 2.73587 3.22181 3.48964 3.51089 3.68424 3.73794 3.74570 3.77013 3.89200 3.96126 4.01358 4.12471 4.19048 4.27015 4.29285 4.35314 4.41934 4.46734 4.50015 4.58855 4.61979 4.66638 4.71304 4.73517 4.76124 4.81802 4.84994 4.98423 5.04999 5.09773 5.13760 5.20085 5.22743 5.34782 5.40614 5.56454 5.72621 5.83435 5.91109 6.44135 6.49797 6.52025 7.16531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.103 3.897 4 C -0.168 4.168 5 C -0.081 4.081 6 C -0.110 4.110 7 C -0.059 4.059 8 H 0.109 0.891 9 C -0.126 4.126 10 C 0.120 3.880 11 H 0.102 0.898 12 N -0.701 5.701 13 C 0.590 3.410 14 O -0.574 6.574 15 C -0.269 4.269 16 C 0.083 3.917 17 C -0.084 4.084 18 O -0.175 6.175 19 C -0.024 4.024 20 C -0.036 4.036 21 O -0.553 6.553 22 Si 0.762 3.238 23 C -0.146 4.146 24 C -0.141 4.141 25 C -0.079 4.079 26 C -0.211 4.211 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.131 0.869 31 H 0.144 0.856 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.412 0.588 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.132 0.868 39 H 0.406 0.594 40 H -0.313 1.313 41 H -0.262 1.262 42 H 0.179 0.821 43 H 0.095 0.905 44 H 0.068 0.932 45 H 0.142 0.858 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.135 -0.956 0.464 6.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.058 3.942 4 C -0.187 4.187 5 C -0.099 4.099 6 C -0.110 4.110 7 C -0.078 4.078 8 H 0.127 0.873 9 C -0.164 4.164 10 C 0.015 3.985 11 H 0.120 0.880 12 N -0.351 5.351 13 C 0.379 3.621 14 O -0.456 6.456 15 C -0.274 4.274 16 C 0.030 3.970 17 C -0.140 4.140 18 O -0.072 6.072 19 C -0.072 4.072 20 C -0.145 4.145 21 O -0.365 6.365 22 Si 0.666 3.334 23 C -0.165 4.165 24 C -0.179 4.179 25 C -0.097 4.097 26 C -0.230 4.230 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.132 0.868 30 H 0.149 0.851 31 H 0.162 0.838 32 H 0.100 0.900 33 H 0.116 0.884 34 H 0.249 0.751 35 H 0.112 0.888 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.149 0.851 39 H 0.259 0.741 40 H -0.241 1.241 41 H -0.187 1.187 42 H 0.196 0.804 43 H 0.113 0.887 44 H 0.087 0.913 45 H 0.159 0.841 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.118 0.004 0.620 5.156 hybrid contribution -0.751 -0.779 -1.358 1.737 sum -5.869 -0.775 -0.738 5.966 Atomic orbital electron populations 1.23294 0.76648 1.05354 1.02159 1.86046 1.23310 1.27385 1.88823 1.19338 0.92880 0.84723 0.97251 1.20658 0.91714 0.99391 1.06894 1.21118 1.00839 0.90713 0.97190 1.19696 0.93572 0.94619 1.03137 1.21221 1.00130 0.89496 0.96961 0.87326 1.23427 1.03622 0.92876 0.96493 1.22554 0.91207 0.87673 0.97082 0.88006 1.45689 1.21587 1.08095 1.59748 1.17368 0.84985 0.82239 0.77498 1.90748 1.32441 1.78445 1.43917 1.21252 0.98484 0.94931 1.12686 1.23259 0.85393 0.92778 0.95575 1.20714 0.92766 1.00454 1.00071 1.83649 1.25672 1.38951 1.58966 1.21485 0.95948 0.86896 1.02822 1.23934 0.91713 1.14610 0.84236 1.86504 1.40075 1.89698 1.20251 0.93669 0.76714 0.72175 0.90840 1.22767 0.92139 1.00130 1.01482 1.23596 1.01860 0.94540 0.97912 1.21015 0.94205 0.97385 0.97119 1.21451 1.00924 0.92119 1.08480 0.91805 0.91729 0.86818 0.85123 0.83778 0.89970 0.88421 0.75088 0.88754 0.87942 0.88190 0.85084 0.74101 1.24139 1.18730 0.80394 0.88685 0.91338 0.84052 0.83977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.34 -1.84 10.50 -92.37 -0.97 -2.81 16 3 C 0.10 0.51 6.69 22.51 0.15 0.66 16 4 C -0.17 -0.70 9.99 22.37 0.22 -0.48 16 5 C -0.08 -0.10 9.70 22.25 0.22 0.11 16 6 C -0.11 0.01 5.29 -19.85 -0.11 -0.09 16 7 C -0.06 0.16 3.98 -11.01 -0.04 0.12 16 8 H 0.11 -0.41 8.09 -2.39 -0.02 -0.43 16 9 C -0.13 0.47 7.30 31.12 0.23 0.70 16 10 C 0.12 -0.04 4.24 45.52 0.19 0.15 16 11 H 0.10 0.36 7.46 -2.38 -0.02 0.34 16 12 N -0.70 -0.29 5.35 -443.34 -2.37 -2.66 16 13 C 0.59 4.05 7.81 86.65 0.68 4.73 16 14 O -0.57 -7.45 14.45 -4.07 -0.06 -7.51 16 15 C -0.27 -1.47 6.31 -18.99 -0.12 -1.59 16 16 C 0.08 0.45 7.37 25.26 0.19 0.63 16 17 C -0.08 -0.14 9.89 71.23 0.70 0.56 16 18 O -0.18 -0.84 8.89 4.45 0.04 -0.80 16 19 C -0.02 -0.06 6.24 24.76 0.15 0.10 16 20 C -0.04 0.12 2.97 71.23 0.21 0.33 16 21 O -0.55 0.86 12.84 -148.98 -1.91 -1.05 16 22 Si 0.76 -1.83 32.08 68.60 2.20 0.37 16 23 C -0.15 -0.23 10.46 23.65 0.25 0.01 16 24 C -0.14 0.24 7.25 31.12 0.23 0.46 16 25 C -0.08 0.05 8.61 22.25 0.19 0.24 16 26 C -0.21 -0.27 9.04 22.37 0.20 -0.07 16 27 H 0.06 -0.28 7.67 -2.39 -0.02 -0.29 16 28 H 0.06 -0.29 7.66 -2.39 -0.02 -0.31 16 29 H 0.11 -0.64 8.14 -2.39 -0.02 -0.66 16 30 H 0.13 0.39 8.06 -2.91 -0.02 0.36 16 31 H 0.14 -0.38 8.05 -2.91 -0.02 -0.40 16 32 H 0.08 -0.31 8.14 -2.39 -0.02 -0.32 16 33 H 0.10 -0.53 7.71 -2.38 -0.02 -0.54 16 34 H 0.41 -1.89 7.90 -92.71 -0.73 -2.62 16 35 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 36 H 0.10 -0.29 8.14 -2.38 -0.02 -0.31 16 37 H 0.10 0.43 6.49 -2.39 -0.02 0.41 16 38 H 0.13 -1.30 7.96 -2.39 -0.02 -1.32 16 39 H 0.41 -4.27 8.74 -74.06 -0.65 -4.92 16 40 H -0.31 -2.51 7.11 99.48 0.71 -1.80 16 41 H -0.26 0.22 7.11 99.48 0.71 0.93 16 42 H 0.18 -0.71 7.74 -2.91 -0.02 -0.73 16 43 H 0.09 -0.29 6.29 -2.39 -0.02 -0.30 16 44 H 0.07 0.03 8.14 -2.38 -0.02 0.01 16 45 H 0.14 -0.69 6.64 -2.91 -0.02 -0.71 16 46 H 0.14 -0.39 6.30 -2.91 -0.02 -0.41 16 Total: 0.00 -22.06 384.72 1.27 -20.79 By element: Atomic # 1 Polarization: -13.66 SS G_CDS: -0.31 Total: -13.97 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 4.65 Total: 7.65 kcal Atomic # 7 Polarization: -0.29 SS G_CDS: -2.37 Total: -2.66 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -2.90 Total: -12.17 kcal Atomic # 14 Polarization: -1.83 SS G_CDS: 2.20 Total: 0.37 kcal Total: -22.06 1.27 -20.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100430_13308374.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.085 kcal (2) G-P(sol) polarization free energy of solvation -22.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds