Wall clock time and date at job start Sun Mar 7 2021 05:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35903 * 116.99959 * 2 1 4 4 C 1.38731 * 120.05186 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94228 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05521 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.94394 * 180.02562 * 6 5 4 8 8 H 1.09003 * 112.84961 * 11.19397 * 7 6 5 9 9 C 1.53777 * 113.69180 * 142.46870 * 7 6 5 10 10 C 1.53783 * 87.08216 * 139.99142 * 9 7 6 11 11 H 1.08998 * 113.69073 * 89.12908 * 10 9 7 12 12 N 1.46501 * 113.61268 * 220.01736 * 10 9 7 13 13 C 1.34777 * 120.00083 * 252.49627 * 12 10 9 14 14 O 1.21593 * 120.00016 * 359.97438 * 13 12 10 15 15 C 1.47523 * 119.99932 * 180.02562 * 13 12 10 16 16 C 1.39773 * 120.06701 * 179.97438 * 15 13 12 17 17 C 1.37634 * 119.92800 * 179.74343 * 16 15 13 18 18 C 1.50699 * 119.96590 * 180.27447 * 17 16 15 19 19 O 1.42897 * 109.46965 * 255.27750 * 18 17 16 20 20 Si 1.86299 * 109.47243 * 15.27313 * 18 17 16 21 21 C 1.39189 * 120.06841 * 0.54663 * 17 16 15 22 22 N 1.39055 * 119.93336 * 179.72480 * 21 17 16 23 23 C 1.46901 * 110.99854 * 239.73141 * 22 21 17 24 24 C 1.46898 * 110.99970 * 115.77306 * 22 21 17 25 25 C 1.39243 * 120.14102 * 359.45216 * 21 17 16 26 26 C 1.37595 * 120.06584 * 0.27144 * 25 21 17 27 27 C 1.53780 * 87.08106 * 334.56530 * 10 9 7 28 28 C 1.38265 * 120.11134 * 0.27731 * 6 5 4 29 29 C 1.38148 * 120.05378 * 359.45129 * 28 6 5 30 30 H 1.09000 * 109.47205 * 300.00442 * 1 2 3 31 31 H 1.08994 * 109.46929 * 60.00170 * 1 2 3 32 32 H 1.08993 * 109.47018 * 180.02562 * 1 2 3 33 33 H 1.08004 * 120.03152 * 0.02562 * 4 3 2 34 34 H 1.08003 * 119.97459 * 180.02562 * 5 4 3 35 35 H 1.09005 * 113.61520 * 25.44280 * 9 7 6 36 36 H 1.08998 * 113.61465 * 254.53637 * 9 7 6 37 37 H 0.97002 * 120.00202 * 72.50052 * 12 10 9 38 38 H 1.07994 * 120.03644 * 0.02562 * 16 15 13 39 39 H 1.08996 * 109.47294 * 135.27329 * 18 17 16 40 40 H 0.96696 * 114.00429 * 59.99349 * 19 18 17 41 41 H 1.48504 * 109.99810 * 58.68497 * 20 18 17 42 42 H 1.48496 * 110.00301 * 180.02562 * 20 18 17 43 43 H 1.09002 * 109.47401 * 59.99571 * 23 22 21 44 44 H 1.09001 * 109.46874 * 299.99584 * 23 22 21 45 45 H 1.09004 * 109.46970 * 179.97438 * 23 22 21 46 46 H 1.09007 * 109.46909 * 183.95594 * 24 22 21 47 47 H 1.08998 * 109.47110 * 303.95202 * 24 22 21 48 48 H 1.09002 * 109.47061 * 63.95784 * 24 22 21 49 49 H 1.07996 * 119.96755 * 180.24740 * 25 21 17 50 50 H 1.07995 * 120.03181 * 180.02562 * 26 25 21 51 51 H 1.09006 * 113.61158 * 139.98014 * 27 10 9 52 52 H 1.08996 * 113.61643 * 270.80067 * 27 10 9 53 53 H 1.08000 * 119.97348 * 179.72183 * 28 6 5 54 54 H 1.08007 * 120.02743 * 180.27597 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 5.0564 4.9480 -0.1972 9 6 3.2721 6.0750 -0.8621 10 6 3.5951 7.0851 0.2516 11 1 4.5580 7.5806 0.1277 12 7 2.5041 8.0231 0.5276 13 6 2.6099 9.3112 0.1455 14 8 3.6111 9.6950 -0.4279 15 6 1.5114 10.2558 0.4240 16 6 1.6199 11.5921 0.0288 17 6 0.5912 12.4697 0.2853 18 6 0.7046 13.9092 -0.1458 19 8 0.9724 14.7282 0.9941 20 14 2.0943 14.0818 -1.3746 21 6 -0.5515 12.0303 0.9477 22 7 -1.5867 12.9207 1.2105 23 6 -1.8392 13.0233 2.6540 24 6 -2.8071 12.5371 0.4885 25 6 -0.6626 10.6997 1.3426 26 6 0.3600 9.8162 1.0840 27 6 3.6376 5.8885 1.2165 28 6 1.9212 3.6048 0.0031 29 6 1.2916 2.3751 -0.0020 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 4.0209 0.3798 0.0005 34 1 5.1346 2.5750 0.0000 35 1 2.2054 5.8885 -0.9865 36 1 3.7784 6.2868 -1.8038 37 1 1.7055 7.7171 0.9854 38 1 2.5080 11.9346 -0.4813 39 1 -0.2306 14.2248 -0.6083 40 1 1.7914 14.5033 1.4564 41 1 1.8433 13.2106 -2.5508 42 1 2.2170 15.4970 -1.8072 43 1 -0.9385 13.3763 3.1562 44 1 -2.1131 12.0435 3.0454 45 1 -2.6531 13.7263 2.8315 46 1 -3.5795 13.2879 0.6557 47 1 -2.5920 12.4684 -0.5779 48 1 -3.1555 11.5702 0.8519 49 1 -1.5522 10.3609 1.8528 50 1 0.2730 8.7842 1.3902 51 1 4.4391 5.9496 1.9528 52 1 2.6712 5.6518 1.6615 53 1 1.3343 4.5114 0.0064 54 1 0.2129 2.3202 -0.0028 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100430_13422196.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:20:37 Heat of formation + Delta-G solvation = -1.105919 kcal Electronic energy + Delta-G solvation = -34538.538443 eV Core-core repulsion = 30022.672534 eV Total energy + Delta-G solvation = -4515.865909 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.193 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.82699 -41.34286 -40.64323 -39.63480 -37.90236 -37.75871 -37.16326 -34.77104 -32.74273 -32.03031 -31.50675 -30.86025 -28.55092 -28.29563 -26.90147 -26.65470 -26.61994 -25.16747 -23.75140 -23.27774 -22.82852 -22.13591 -21.27091 -20.42296 -19.17183 -18.95685 -17.98280 -17.69677 -17.61635 -17.10260 -16.67053 -16.66114 -16.39972 -16.19142 -16.10209 -15.85329 -15.77294 -15.54876 -15.46291 -15.02309 -14.75995 -14.64647 -14.62018 -14.36862 -14.21309 -14.09235 -13.98828 -13.53785 -13.41626 -13.24617 -13.09100 -13.00972 -12.94718 -12.74921 -12.66598 -12.54198 -12.34184 -12.25299 -12.09948 -12.04524 -11.61857 -11.53375 -11.40703 -10.99668 -10.39567 -10.14911 -10.09221 -9.95117 -9.75648 -9.49854 -9.00845 -5.03252 -0.37014 0.16476 0.39353 0.42605 1.27225 1.56104 1.68723 1.89196 2.09620 2.38791 2.64728 2.74673 2.79674 3.47982 3.53398 3.61655 3.68655 3.74975 3.75605 3.83230 3.90009 3.97041 4.02655 4.05006 4.15289 4.20523 4.24835 4.27227 4.35152 4.35511 4.42732 4.45017 4.49573 4.50840 4.59092 4.64079 4.66208 4.71178 4.74061 4.77940 4.81330 4.86880 4.92546 4.99506 5.00297 5.03750 5.08103 5.11937 5.13382 5.19697 5.27018 5.34973 5.41137 5.53811 5.59569 5.73687 5.84427 5.84879 6.29346 6.44657 6.48762 6.82304 7.15328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C 0.102 3.898 4 C -0.169 4.169 5 C -0.081 4.081 6 C -0.109 4.109 7 C -0.061 4.061 8 H 0.107 0.893 9 C -0.143 4.143 10 C 0.119 3.881 11 H 0.103 0.897 12 N -0.701 5.701 13 C 0.559 3.441 14 O -0.574 6.574 15 C -0.148 4.148 16 C -0.058 4.058 17 C -0.117 4.117 18 C -0.037 4.037 19 O -0.541 6.541 20 Si 0.735 3.265 21 C 0.136 3.864 22 N -0.524 5.524 23 C 0.033 3.967 24 C 0.026 3.974 25 C -0.157 4.157 26 C -0.056 4.056 27 C -0.124 4.124 28 C -0.079 4.079 29 C -0.211 4.211 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.113 0.887 33 H 0.130 0.870 34 H 0.144 0.856 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.414 0.586 38 H 0.140 0.860 39 H 0.106 0.894 40 H 0.389 0.611 41 H -0.295 1.295 42 H -0.289 1.289 43 H 0.067 0.933 44 H 0.042 0.958 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.062 0.938 48 H 0.044 0.956 49 H 0.148 0.852 50 H 0.160 0.840 51 H 0.084 0.916 52 H 0.101 0.899 53 H 0.144 0.856 54 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.164 -3.875 4.747 7.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.256 6.256 3 C 0.057 3.943 4 C -0.187 4.187 5 C -0.099 4.099 6 C -0.110 4.110 7 C -0.080 4.080 8 H 0.125 0.875 9 C -0.182 4.182 10 C 0.014 3.986 11 H 0.121 0.879 12 N -0.352 5.352 13 C 0.347 3.653 14 O -0.455 6.455 15 C -0.151 4.151 16 C -0.077 4.077 17 C -0.119 4.119 18 C -0.148 4.148 19 O -0.348 6.348 20 Si 0.642 3.358 21 C 0.042 3.958 22 N -0.245 5.245 23 C -0.113 4.113 24 C -0.121 4.121 25 C -0.177 4.177 26 C -0.075 4.075 27 C -0.162 4.162 28 C -0.097 4.097 29 C -0.230 4.230 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.131 0.869 33 H 0.148 0.852 34 H 0.162 0.838 35 H 0.114 0.886 36 H 0.083 0.917 37 H 0.253 0.747 38 H 0.157 0.843 39 H 0.124 0.876 40 H 0.238 0.762 41 H -0.222 1.222 42 H -0.217 1.217 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.081 0.919 48 H 0.063 0.937 49 H 0.165 0.835 50 H 0.178 0.822 51 H 0.102 0.898 52 H 0.119 0.881 53 H 0.162 0.838 54 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.597 -2.833 3.207 5.589 hybrid contribution -1.339 -0.944 0.175 1.648 sum -4.935 -3.777 3.382 7.076 Atomic orbital electron populations 1.23288 0.76665 1.05333 1.02152 1.86048 1.23296 1.27454 1.88840 1.19343 0.92877 0.84741 0.97303 1.20658 0.91730 0.99403 1.06939 1.21121 1.00832 0.90746 0.97215 1.19701 0.93581 0.94624 1.03051 1.21226 1.00076 0.89465 0.97220 0.87483 1.23618 1.01896 0.94750 0.97941 1.22551 0.91350 0.87688 0.96970 0.87948 1.45794 1.21591 1.08187 1.59643 1.18399 0.86211 0.82799 0.77874 1.90790 1.32766 1.78533 1.43385 1.19884 0.96058 0.94132 1.05050 1.21079 0.97650 0.92309 0.96617 1.20246 0.93950 0.96694 1.00969 1.24683 1.07300 0.87408 0.95457 1.86517 1.47606 1.57405 1.43288 0.94224 0.85683 0.77223 0.78637 1.18980 0.92028 0.90186 0.94641 1.59370 1.06302 1.47974 1.10893 1.22435 1.02678 1.01258 0.84927 1.22514 0.90563 1.00512 0.98476 1.21845 1.00561 0.93275 1.02046 1.21435 0.90905 1.00883 0.94308 1.23421 1.03858 0.92550 0.96342 1.21021 0.94169 0.97381 0.97085 1.21457 1.00908 0.92151 1.08481 0.91657 0.91866 0.86878 0.85246 0.83843 0.88602 0.91652 0.74741 0.84257 0.87612 0.76228 1.22228 1.21675 0.91446 0.93923 0.90258 0.89919 0.91876 0.93744 0.83455 0.82236 0.89769 0.88082 0.83830 0.83998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 113.37 1.11 1.05 16 2 O -0.34 -1.64 10.50 -92.46 -0.97 -2.61 16 3 C 0.10 0.42 6.69 22.50 0.15 0.57 16 4 C -0.17 -0.58 9.99 22.37 0.22 -0.35 16 5 C -0.08 -0.02 9.70 22.25 0.22 0.19 16 6 C -0.11 0.17 5.29 -19.85 -0.11 0.06 16 7 C -0.06 0.27 3.97 -11.01 -0.04 0.23 16 8 H 0.11 -0.54 8.09 -2.39 -0.02 -0.56 16 9 C -0.14 0.49 7.25 31.12 0.23 0.71 16 10 C 0.12 -0.36 4.24 45.52 0.19 -0.17 16 11 H 0.10 0.12 7.46 -2.39 -0.02 0.10 16 12 N -0.70 2.61 5.30 -443.21 -2.35 0.26 16 13 C 0.56 1.72 7.76 86.69 0.67 2.39 16 14 O -0.57 -6.48 15.94 -4.01 -0.06 -6.54 16 15 C -0.15 -0.07 5.88 -20.08 -0.12 -0.19 16 16 C -0.06 -0.13 8.19 22.50 0.18 0.05 16 17 C -0.12 -0.23 5.27 -19.78 -0.10 -0.33 16 18 C -0.04 -0.10 2.33 71.24 0.17 0.06 16 19 O -0.54 -1.37 12.88 -148.98 -1.92 -3.29 16 20 Si 0.74 2.35 29.92 68.60 2.05 4.41 16 21 C 0.14 0.05 4.69 38.47 0.18 0.23 16 22 N -0.52 -0.18 4.20 -745.08 -3.13 -3.31 16 23 C 0.03 -0.08 9.34 127.69 1.19 1.11 16 24 C 0.03 -0.06 9.32 127.69 1.19 1.13 16 25 C -0.16 0.59 8.57 22.36 0.19 0.78 16 26 C -0.06 0.28 9.53 22.50 0.21 0.50 16 27 C -0.12 0.81 7.29 31.12 0.23 1.04 16 28 C -0.08 0.17 8.59 22.25 0.19 0.36 16 29 C -0.21 -0.02 9.04 22.36 0.20 0.18 16 30 H 0.06 -0.35 7.67 -2.39 -0.02 -0.37 16 31 H 0.06 -0.31 7.66 -2.39 -0.02 -0.33 16 32 H 0.11 -0.69 8.14 -2.39 -0.02 -0.71 16 33 H 0.13 0.31 8.06 -2.91 -0.02 0.29 16 34 H 0.14 -0.50 8.05 -2.91 -0.02 -0.52 16 35 H 0.10 -0.48 6.33 -2.38 -0.02 -0.49 16 36 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 37 H 0.41 -4.18 6.74 -92.71 -0.63 -4.81 16 38 H 0.14 0.36 4.70 -2.91 -0.01 0.35 16 39 H 0.11 0.54 7.77 -2.39 -0.02 0.53 16 40 H 0.39 -1.98 8.70 -74.06 -0.64 -2.62 16 41 H -0.30 -2.80 7.11 99.48 0.71 -2.09 16 42 H -0.29 -2.73 7.11 99.48 0.71 -2.02 16 43 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 44 H 0.04 -0.21 7.10 -2.39 -0.02 -0.23 16 45 H 0.08 -0.25 8.14 -2.38 -0.02 -0.27 16 46 H 0.08 -0.29 8.14 -2.38 -0.02 -0.31 16 47 H 0.06 -0.07 8.12 -2.39 -0.02 -0.09 16 48 H 0.04 -0.22 7.45 -2.39 -0.02 -0.24 16 49 H 0.15 -1.10 7.01 -2.91 -0.02 -1.12 16 50 H 0.16 -1.95 6.39 -2.91 -0.02 -1.97 16 51 H 0.08 -0.55 8.14 -2.38 -0.02 -0.57 16 52 H 0.10 -0.89 7.69 -2.39 -0.02 -0.91 16 53 H 0.14 -1.01 6.68 -2.91 -0.02 -1.03 16 54 H 0.14 -0.54 6.30 -2.91 -0.02 -0.56 16 Total: 0.00 -21.85 432.53 -0.31 -22.15 By element: Atomic # 1 Polarization: -20.40 SS G_CDS: -0.29 Total: -20.69 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 6.36 Total: 9.61 kcal Atomic # 7 Polarization: 2.43 SS G_CDS: -5.48 Total: -3.05 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -2.95 Total: -12.44 kcal Atomic # 14 Polarization: 2.35 SS G_CDS: 2.05 Total: 4.41 kcal Total: -21.85 -0.31 -22.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100430_13422196.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.048 kcal (2) G-P(sol) polarization free energy of solvation -21.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds