Wall clock time and date at job start Sun Mar 7 2021 05:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35900 * 116.99951 * 2 1 4 4 C 1.38726 * 120.05580 * 179.97438 * 3 2 1 5 5 C 1.38147 * 119.94381 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05500 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.94145 * 179.97438 * 6 5 4 8 8 H 1.08999 * 112.85071 * 348.79823 * 7 6 5 9 9 C 1.53786 * 113.61502 * 119.99867 * 7 6 5 10 10 C 1.53780 * 87.08369 * 139.97953 * 9 7 6 11 11 H 1.08993 * 113.61878 * 89.19680 * 10 9 7 12 12 N 1.46499 * 113.61280 * 220.01909 * 10 9 7 13 13 C 1.34776 * 119.99853 * 204.99501 * 12 10 9 14 14 O 1.21610 * 119.99842 * 0.02562 * 13 12 10 15 15 C 1.47379 * 119.99829 * 179.97438 * 13 12 10 16 16 C 1.36418 * 127.19564 * 359.97050 * 15 13 12 17 17 O 1.33650 * 108.39792 * 179.76564 * 16 15 13 18 18 C 1.34212 * 110.90853 * 0.44376 * 17 16 15 19 19 C 1.50703 * 125.43768 * 179.81595 * 18 17 16 20 20 O 1.42896 * 109.47055 * 119.69197 * 19 18 17 21 21 Si 1.86304 * 109.46911 * 359.69090 * 19 18 17 22 22 C 1.34180 * 109.12341 * 359.54586 * 18 17 16 23 23 C 1.53782 * 113.61126 * 217.49050 * 7 6 5 24 24 C 1.38263 * 120.11325 * 0.26402 * 6 5 4 25 25 C 1.38148 * 120.05380 * 359.46338 * 24 6 5 26 26 H 1.08999 * 109.47594 * 59.99621 * 1 2 3 27 27 H 1.09000 * 109.47017 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47627 * 299.99592 * 1 2 3 29 29 H 1.07997 * 120.03126 * 0.02562 * 4 3 2 30 30 H 1.07995 * 119.97361 * 180.02562 * 5 4 3 31 31 H 1.09000 * 113.61322 * 25.42339 * 9 7 6 32 32 H 1.09004 * 113.61222 * 254.52357 * 9 7 6 33 33 H 0.97003 * 120.00329 * 25.00159 * 12 10 9 34 34 H 1.08001 * 125.79863 * 0.04512 * 16 15 13 35 35 H 1.09002 * 109.47152 * 239.69005 * 19 18 17 36 36 H 0.96703 * 114.00193 * 180.02562 * 20 19 18 37 37 H 1.48495 * 110.00011 * 60.00027 * 21 19 18 38 38 H 1.48509 * 109.99497 * 181.32041 * 21 19 18 39 39 H 1.07995 * 127.01946 * 180.26438 * 22 18 17 40 40 H 1.09001 * 113.61621 * 105.47223 * 23 7 6 41 41 H 1.09003 * 113.61779 * 334.56899 * 23 7 6 42 42 H 1.07997 * 119.97155 * 179.72916 * 24 6 5 43 43 H 1.07998 * 120.02839 * 180.27561 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3018 3.6758 -0.0005 7 6 3.9860 5.0185 -0.0005 8 1 5.0560 4.9484 0.1950 9 6 3.6384 5.8870 -1.2212 10 6 3.5928 7.0846 -0.2575 11 1 4.5549 7.5813 -0.1324 12 7 2.5012 8.0209 -0.5363 13 6 2.6048 9.3095 -0.1552 14 8 3.6046 9.6950 0.4197 15 6 1.5068 10.2516 -0.4363 16 6 0.3288 9.9802 -1.0684 17 8 -0.3926 11.1042 -1.1169 18 6 0.2687 12.1228 -0.5456 19 6 -0.2397 13.5363 -0.4245 20 8 -0.3224 13.8961 0.9559 21 14 -1.9293 13.6571 -1.2001 22 6 1.4524 11.6804 -0.0943 23 6 3.2691 6.0751 0.8566 24 6 1.9210 3.6048 0.0050 25 6 1.2914 2.3751 -0.0002 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 4.0208 0.3800 0.0005 30 1 5.1344 2.5751 0.0000 31 1 2.6728 5.6478 -1.6665 32 1 4.4411 5.9484 -1.9561 33 1 1.7037 7.7135 -0.9952 34 1 0.0282 9.0192 -1.4590 35 1 0.4442 14.2136 -0.9361 36 1 -0.6436 14.7953 1.1095 37 1 -2.8711 12.7385 -0.5115 38 1 -2.4283 15.0533 -1.1155 39 1 2.2102 12.2564 0.4158 40 1 3.7735 6.2884 1.7990 41 1 2.2024 5.8874 0.9793 42 1 1.3342 4.5114 0.0090 43 1 0.2129 2.3202 -0.0004 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100430_13456056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:20:52 Heat of formation + Delta-G solvation = -27.681852 kcal Electronic energy + Delta-G solvation = -26658.805167 eV Core-core repulsion = 22638.907175 eV Total energy + Delta-G solvation = -4019.897992 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.135 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.71302 -41.55365 -40.75770 -39.58556 -38.08930 -37.80961 -34.85196 -33.81157 -32.06109 -31.96117 -31.01060 -28.29762 -26.84979 -26.66386 -25.99791 -24.46790 -23.60857 -22.28335 -22.12822 -21.14890 -20.21294 -19.16802 -18.93236 -18.73294 -17.76041 -17.35371 -17.17933 -17.02119 -16.65364 -16.23216 -16.15345 -15.85243 -15.78735 -15.65986 -15.31081 -14.62298 -14.59367 -14.35907 -14.20136 -14.10492 -14.05113 -13.69586 -13.42923 -13.23530 -12.99856 -12.83212 -12.75696 -12.36269 -12.13943 -12.10526 -11.63499 -11.54751 -11.42301 -11.13686 -10.97149 -10.66460 -10.11717 -9.94669 -9.75060 -9.00678 -4.92056 0.26052 0.39771 0.42924 0.79499 1.18949 1.46205 1.74245 1.96789 2.08116 2.24292 2.39343 2.74680 3.34501 3.49265 3.50607 3.57346 3.72748 3.74626 3.88942 3.95529 3.97199 4.02197 4.16883 4.27212 4.29193 4.36183 4.41938 4.43121 4.51074 4.52517 4.66004 4.72471 4.74451 4.77860 4.85913 4.89660 4.98731 5.06623 5.11389 5.13482 5.17878 5.34795 5.41449 5.55367 5.73377 5.84604 5.85248 6.45237 6.49023 6.50673 7.16113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C 0.103 3.897 4 C -0.169 4.169 5 C -0.082 4.082 6 C -0.109 4.109 7 C -0.061 4.061 8 H 0.105 0.895 9 C -0.121 4.121 10 C 0.118 3.882 11 H 0.096 0.904 12 N -0.698 5.698 13 C 0.587 3.413 14 O -0.588 6.588 15 C -0.269 4.269 16 C 0.066 3.934 17 O -0.166 6.166 18 C -0.016 4.016 19 C -0.052 4.052 20 O -0.558 6.558 21 Si 0.788 3.212 22 C -0.152 4.152 23 C -0.144 4.144 24 C -0.078 4.078 25 C -0.211 4.211 26 H 0.066 0.934 27 H 0.113 0.887 28 H 0.063 0.937 29 H 0.129 0.871 30 H 0.143 0.857 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.417 0.583 34 H 0.267 0.733 35 H 0.121 0.879 36 H 0.406 0.594 37 H -0.304 1.304 38 H -0.269 1.269 39 H 0.143 0.857 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.146 0.854 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.238 -0.618 -6.001 7.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.058 3.942 4 C -0.187 4.187 5 C -0.100 4.100 6 C -0.110 4.110 7 C -0.080 4.080 8 H 0.123 0.877 9 C -0.159 4.159 10 C 0.014 3.986 11 H 0.114 0.886 12 N -0.349 5.349 13 C 0.377 3.623 14 O -0.469 6.469 15 C -0.274 4.274 16 C -0.004 4.004 17 O -0.062 6.062 18 C -0.064 4.064 19 C -0.159 4.159 20 O -0.370 6.370 21 Si 0.691 3.309 22 C -0.172 4.172 23 C -0.182 4.182 24 C -0.096 4.096 25 C -0.229 4.229 26 H 0.084 0.916 27 H 0.131 0.869 28 H 0.081 0.919 29 H 0.147 0.853 30 H 0.161 0.839 31 H 0.124 0.876 32 H 0.102 0.898 33 H 0.255 0.745 34 H 0.282 0.718 35 H 0.139 0.861 36 H 0.258 0.742 37 H -0.231 1.231 38 H -0.194 1.194 39 H 0.161 0.839 40 H 0.080 0.920 41 H 0.117 0.883 42 H 0.163 0.837 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.349 -0.887 -5.528 7.743 hybrid contribution 0.131 0.500 1.352 1.448 sum -5.218 -0.387 -4.176 6.695 Atomic orbital electron populations 1.23293 0.76639 1.05334 1.02187 1.86047 1.23319 1.27447 1.88830 1.19344 0.92857 0.84769 0.97265 1.20648 0.91761 0.99359 1.06972 1.21111 1.00797 0.90782 0.97261 1.19684 0.93639 0.94502 1.03158 1.21216 0.99988 0.89544 0.97229 0.87656 1.23420 1.04067 0.92161 0.96229 1.22535 0.91136 0.87710 0.97268 0.88571 1.45652 1.21767 1.07688 1.59805 1.17530 0.85161 0.82252 0.77403 1.90780 1.33306 1.78711 1.44090 1.21497 0.98422 0.95287 1.12190 1.25344 0.88463 0.90343 0.96226 1.83687 1.43311 1.16832 1.62364 1.21341 0.92057 0.90265 1.02716 1.24190 1.14531 0.89287 0.87890 1.86518 1.88979 1.38683 1.22850 0.93556 0.71056 0.78115 0.88213 1.22542 0.98415 0.93648 1.02633 1.23633 1.02036 0.94746 0.97818 1.21032 0.94100 0.97462 0.97000 1.21466 1.00944 0.92107 1.08414 0.91586 0.86896 0.91866 0.85263 0.83941 0.87623 0.89788 0.74521 0.71788 0.86146 0.74207 1.23146 1.19444 0.83866 0.91963 0.88304 0.83664 0.83898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 113.37 1.11 1.05 16 2 O -0.34 -1.70 10.50 -92.42 -0.97 -2.67 16 3 C 0.10 0.45 6.69 22.51 0.15 0.60 16 4 C -0.17 -0.64 9.99 22.36 0.22 -0.41 16 5 C -0.08 -0.06 9.70 22.25 0.22 0.15 16 6 C -0.11 0.11 5.29 -19.85 -0.11 0.01 16 7 C -0.06 0.22 3.98 -11.01 -0.04 0.17 16 8 H 0.11 -0.41 8.09 -2.39 -0.02 -0.43 16 9 C -0.12 0.71 7.30 31.12 0.23 0.94 16 10 C 0.12 -0.17 4.24 45.52 0.19 0.02 16 11 H 0.10 0.36 7.46 -2.39 -0.02 0.35 16 12 N -0.70 1.67 5.35 -443.35 -2.37 -0.70 16 13 C 0.59 3.86 7.81 86.65 0.68 4.54 16 14 O -0.59 -9.95 16.58 -4.06 -0.07 -10.01 16 15 C -0.27 -0.99 6.31 -18.99 -0.12 -1.11 16 16 C 0.07 -0.30 11.61 67.39 0.78 0.48 16 17 O -0.17 0.06 8.89 4.52 0.04 0.10 16 18 C -0.02 -0.05 6.24 24.76 0.15 0.11 16 19 C -0.05 0.06 2.97 71.24 0.21 0.28 16 20 O -0.56 -1.00 12.84 -148.98 -1.91 -2.91 16 21 Si 0.79 -2.69 32.09 68.60 2.20 -0.49 16 22 C -0.15 -1.10 10.88 23.65 0.26 -0.84 16 23 C -0.14 0.31 7.25 31.12 0.23 0.53 16 24 C -0.08 0.16 8.62 22.25 0.19 0.35 16 25 C -0.21 -0.05 9.04 22.37 0.20 0.15 16 26 H 0.07 -0.35 7.66 -2.39 -0.02 -0.37 16 27 H 0.11 -0.67 8.14 -2.39 -0.02 -0.69 16 28 H 0.06 -0.30 7.66 -2.38 -0.02 -0.31 16 29 H 0.13 0.36 8.06 -2.91 -0.02 0.34 16 30 H 0.14 -0.40 8.05 -2.91 -0.02 -0.43 16 31 H 0.11 -0.95 7.71 -2.39 -0.02 -0.97 16 32 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 33 H 0.42 -4.45 7.70 -92.71 -0.71 -5.17 16 34 H 0.27 -4.44 7.47 -2.91 -0.02 -4.46 16 35 H 0.12 -0.76 7.96 -2.39 -0.02 -0.78 16 36 H 0.41 -3.05 8.74 -74.05 -0.65 -3.70 16 37 H -0.30 -1.62 7.11 99.48 0.71 -0.91 16 38 H -0.27 0.25 7.11 99.48 0.71 0.96 16 39 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 40 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.10 -0.42 6.29 -2.39 -0.02 -0.44 16 42 H 0.15 -1.03 6.63 -2.91 -0.02 -1.05 16 43 H 0.14 -0.55 6.30 -2.91 -0.02 -0.56 16 Total: 0.00 -28.60 366.44 1.21 -27.38 By element: Atomic # 1 Polarization: -17.45 SS G_CDS: -0.26 Total: -17.71 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 4.56 Total: 7.01 kcal Atomic # 7 Polarization: 1.67 SS G_CDS: -2.37 Total: -0.70 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -2.91 Total: -15.50 kcal Atomic # 14 Polarization: -2.69 SS G_CDS: 2.20 Total: -0.49 kcal Total: -28.60 1.21 -27.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100430_13456056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.299 kcal (2) G-P(sol) polarization free energy of solvation -28.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds