Wall clock time and date at job start Sun Mar 7 2021 05:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35900 * 117.00039 * 2 1 4 4 C 1.38738 * 120.05304 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94018 * 179.97438 * 4 3 2 6 6 C 1.38263 * 120.05697 * 359.97438 * 5 4 3 7 7 C 1.50705 * 119.93946 * 180.02562 * 6 5 4 8 8 H 1.08997 * 112.85349 * 348.80059 * 7 6 5 9 9 C 1.53788 * 113.61300 * 120.00356 * 7 6 5 10 10 C 1.53781 * 87.08063 * 139.97540 * 9 7 6 11 11 H 1.09002 * 113.61382 * 89.19888 * 10 9 7 12 12 N 1.46498 * 113.61158 * 220.01520 * 10 9 7 13 13 C 1.34777 * 119.99828 * 204.72374 * 12 10 9 14 14 O 1.21693 * 120.00014 * 0.28042 * 13 12 10 15 15 C 1.46682 * 120.00182 * 180.27909 * 13 12 10 16 16 C 1.37866 * 126.23209 * 180.02562 * 15 13 12 17 17 C 1.50697 * 126.46175 * 359.93015 * 16 15 13 18 18 C 1.39839 * 107.08111 * 179.97438 * 16 15 13 19 19 C 1.35445 * 107.86726 * 0.02562 * 18 16 15 20 20 C 1.50697 * 125.56649 * 179.97438 * 19 18 16 21 21 O 1.42899 * 109.47456 * 245.02758 * 20 19 18 22 22 Si 1.86298 * 109.46989 * 5.02518 * 20 19 18 23 23 N 1.35535 * 108.87171 * 359.76803 * 19 18 16 24 24 C 1.53782 * 87.08215 * 334.56694 * 10 9 7 25 25 C 1.38258 * 120.11364 * 0.27495 * 6 5 4 26 26 C 1.38150 * 120.05271 * 359.45021 * 25 6 5 27 27 H 1.09000 * 109.47337 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47075 * 300.00333 * 1 2 3 29 29 H 1.09004 * 109.46950 * 59.99652 * 1 2 3 30 30 H 1.07995 * 120.02688 * 359.95773 * 4 3 2 31 31 H 1.08007 * 119.97147 * 180.02562 * 5 4 3 32 32 H 1.09001 * 113.61464 * 25.42740 * 9 7 6 33 33 H 1.09001 * 113.61074 * 254.52774 * 9 7 6 34 34 H 0.97001 * 120.00384 * 25.00821 * 12 10 9 35 35 H 1.08998 * 109.47674 * 89.99831 * 17 16 15 36 36 H 1.09001 * 109.47043 * 210.00398 * 17 16 15 37 37 H 1.09003 * 109.47036 * 329.99415 * 17 16 15 38 38 H 1.08003 * 126.06751 * 180.02562 * 18 16 15 39 39 H 1.08998 * 109.47397 * 125.02601 * 20 19 18 40 40 H 0.96698 * 114.00563 * 180.02562 * 21 20 19 41 41 H 1.48505 * 109.99916 * 178.68213 * 22 20 19 42 42 H 1.48504 * 110.00015 * 299.99934 * 22 20 19 43 43 H 0.96998 * 125.67923 * 180.26884 * 23 19 18 44 44 H 1.09002 * 113.61513 * 139.98092 * 24 10 9 45 45 H 1.08999 * 113.61337 * 270.88082 * 24 10 9 46 46 H 1.08003 * 119.97123 * 179.72857 * 25 6 5 47 47 H 1.08001 * 120.02456 * 180.27168 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 5.0562 4.9484 0.1929 9 6 3.6387 5.8859 -1.2242 10 6 3.5931 7.0842 -0.2615 11 1 4.5553 7.5811 -0.1369 12 7 2.5015 8.0204 -0.5412 13 6 2.6028 9.3080 -0.1562 14 8 3.6032 9.6942 0.4191 15 6 1.5072 10.2440 -0.4308 16 6 1.4749 11.5812 -0.0968 17 6 2.5547 12.3521 0.6178 18 6 0.2508 12.0871 -0.5453 19 6 -0.4283 11.0725 -1.1318 20 6 -1.7974 11.1778 -1.7528 21 8 -2.7201 10.3785 -1.0100 22 14 -2.3554 12.9550 -1.7281 23 7 0.3262 9.9482 -1.0730 24 6 3.2694 6.0758 0.8535 25 6 1.9212 3.6048 0.0031 26 6 1.2916 2.3751 -0.0021 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 4.0208 0.3799 0.0016 31 1 5.1346 2.5750 0.0000 32 1 2.6729 5.6464 -1.6692 33 1 4.4413 5.9465 -1.9592 34 1 1.7040 7.7126 -0.9997 35 1 3.2445 12.7740 -0.1132 36 1 2.1032 13.1568 1.1980 37 1 3.0975 11.6831 1.2856 38 1 -0.0922 13.1060 -0.4423 39 1 -1.7573 10.8238 -2.7829 40 1 -3.6236 10.3983 -1.3542 41 1 -3.6907 13.0770 -2.3665 42 1 -2.4142 13.4496 -0.3291 43 1 0.0753 9.0794 -1.4240 44 1 3.7739 6.2898 1.7957 45 1 2.2028 5.8882 0.9764 46 1 1.3343 4.5114 0.0062 47 1 0.2130 2.3202 -0.0029 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100430_13940406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:20:56 Heat of formation + Delta-G solvation = -7.636344 kcal Electronic energy + Delta-G solvation = -28935.149569 eV Core-core repulsion = 24858.301859 eV Total energy + Delta-G solvation = -4076.847711 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.60441 -41.52331 -40.67275 -39.52777 -37.91519 -37.77071 -34.91311 -33.47860 -32.08377 -31.87592 -31.03294 -28.38228 -28.20894 -27.14877 -26.71380 -25.36084 -23.78781 -22.89945 -21.96744 -21.48898 -20.90475 -20.09599 -19.29070 -19.19928 -18.63924 -17.79397 -17.08621 -16.91947 -16.69410 -16.45935 -16.12254 -16.02670 -15.83617 -15.46197 -14.96003 -14.91866 -14.81597 -14.64454 -14.37115 -14.17425 -14.10367 -13.96602 -13.61544 -13.48959 -13.31288 -13.26189 -13.11185 -13.03667 -12.79620 -12.49099 -12.37297 -12.14345 -11.99260 -11.65950 -11.59237 -11.45803 -11.06162 -10.62098 -10.19946 -9.99148 -9.83498 -9.19916 -9.04735 -4.84399 0.28286 0.35306 0.38718 1.20829 1.50338 1.64719 1.94940 2.03405 2.19113 2.24028 2.35383 2.70247 3.25610 3.44703 3.66389 3.69846 3.77400 3.79799 3.85806 3.92180 3.97695 4.11472 4.13667 4.17752 4.23920 4.32006 4.38306 4.41011 4.46633 4.60906 4.68388 4.68802 4.70204 4.72227 4.79760 4.81593 4.91348 4.94440 5.01626 5.05601 5.11932 5.16313 5.29550 5.34718 5.37198 5.48726 5.63310 5.69820 5.80264 5.84032 6.30265 6.40959 6.46857 6.53704 7.06918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.103 3.897 4 C -0.167 4.167 5 C -0.080 4.080 6 C -0.110 4.110 7 C -0.059 4.059 8 H 0.110 0.890 9 C -0.124 4.124 10 C 0.121 3.879 11 H 0.104 0.896 12 N -0.708 5.708 13 C 0.589 3.411 14 O -0.561 6.561 15 C -0.070 4.070 16 C -0.086 4.086 17 C -0.090 4.090 18 C -0.211 4.211 19 C 0.074 3.926 20 C -0.064 4.064 21 O -0.561 6.561 22 Si 0.785 3.215 23 N -0.514 5.514 24 C -0.144 4.144 25 C -0.080 4.080 26 C -0.212 4.212 27 H 0.114 0.886 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.132 0.868 31 H 0.146 0.854 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.407 0.593 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.162 0.838 39 H 0.107 0.893 40 H 0.401 0.599 41 H -0.279 1.279 42 H -0.300 1.300 43 H 0.428 0.572 44 H 0.066 0.934 45 H 0.092 0.908 46 H 0.140 0.860 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.468 -0.427 -5.691 7.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.255 6.255 3 C 0.058 3.942 4 C -0.186 4.186 5 C -0.098 4.098 6 C -0.110 4.110 7 C -0.078 4.078 8 H 0.128 0.872 9 C -0.162 4.162 10 C 0.016 3.984 11 H 0.122 0.878 12 N -0.358 5.358 13 C 0.378 3.622 14 O -0.440 6.440 15 C -0.183 4.183 16 C -0.095 4.095 17 C -0.147 4.147 18 C -0.235 4.235 19 C -0.045 4.045 20 C -0.173 4.173 21 O -0.372 6.372 22 Si 0.689 3.311 23 N -0.111 5.111 24 C -0.183 4.183 25 C -0.098 4.098 26 C -0.231 4.231 27 H 0.132 0.868 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.150 0.850 31 H 0.163 0.837 32 H 0.116 0.884 33 H 0.104 0.896 34 H 0.243 0.757 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.179 0.821 39 H 0.125 0.875 40 H 0.252 0.748 41 H -0.205 1.205 42 H -0.227 1.227 43 H 0.267 0.733 44 H 0.085 0.915 45 H 0.110 0.890 46 H 0.158 0.842 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.751 -0.117 -4.731 6.039 hybrid contribution -1.610 -1.500 0.060 2.201 sum -5.361 -1.617 -4.671 7.292 Atomic orbital electron populations 1.23292 0.76671 1.05374 1.02109 1.86047 1.23281 1.27368 1.88811 1.19339 0.92906 0.84696 0.97228 1.20671 0.91674 0.99443 1.06784 1.21129 1.00888 0.90667 0.97088 1.19691 0.93508 0.94673 1.03136 1.21226 1.00165 0.89425 0.96982 0.87210 1.23417 1.03749 0.92554 0.96434 1.22565 0.91175 0.87616 0.97020 0.87770 1.45765 1.21624 1.08370 1.60068 1.17196 0.85120 0.81835 0.78070 1.90812 1.31671 1.78036 1.43469 1.20162 0.90241 0.95965 1.11925 1.20162 0.96976 0.91866 1.00503 1.20336 0.95673 0.99093 0.99568 1.20780 0.95747 1.00137 1.06797 1.20127 0.93486 0.86769 1.04141 1.24713 0.85884 1.09625 0.97072 1.86532 1.23610 1.69098 1.57917 0.93423 0.82166 0.74765 0.80785 1.41770 1.13215 1.11552 1.44568 1.23618 1.01720 0.94870 0.98063 1.20993 0.94242 0.97295 0.97285 1.21443 1.00880 0.92172 1.08559 0.86770 0.91926 0.91708 0.85039 0.83660 0.88366 0.89600 0.75651 0.90836 0.90566 0.92067 0.82080 0.87543 0.74767 1.20519 1.22717 0.73273 0.91504 0.88964 0.84247 0.84097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.34 -1.83 10.50 -92.43 -0.97 -2.80 16 3 C 0.10 0.50 6.69 22.51 0.15 0.65 16 4 C -0.17 -0.66 9.99 22.37 0.22 -0.44 16 5 C -0.08 -0.08 9.70 22.25 0.22 0.14 16 6 C -0.11 0.04 5.29 -19.85 -0.11 -0.06 16 7 C -0.06 0.19 3.98 -11.01 -0.04 0.14 16 8 H 0.11 -0.46 8.09 -2.39 -0.02 -0.48 16 9 C -0.12 0.61 7.30 31.12 0.23 0.84 16 10 C 0.12 -0.13 4.24 45.52 0.19 0.06 16 11 H 0.10 0.30 7.47 -2.39 -0.02 0.28 16 12 N -0.71 0.64 5.35 -443.99 -2.38 -1.73 16 13 C 0.59 3.86 7.79 86.45 0.67 4.53 16 14 O -0.56 -7.82 14.40 -4.33 -0.06 -7.88 16 15 C -0.07 -0.36 7.06 40.35 0.28 -0.07 16 16 C -0.09 -0.57 6.21 -19.57 -0.12 -0.69 16 17 C -0.09 -0.55 9.83 71.23 0.70 0.15 16 18 C -0.21 -0.63 9.27 22.01 0.20 -0.42 16 19 C 0.07 0.03 6.50 41.34 0.27 0.30 16 20 C -0.06 0.29 3.07 71.24 0.22 0.51 16 21 O -0.56 1.30 12.86 -148.98 -1.92 -0.61 16 22 Si 0.79 -3.63 30.56 68.60 2.10 -1.53 16 23 N -0.51 0.29 5.99 -171.94 -1.03 -0.74 16 24 C -0.14 0.23 7.25 31.12 0.23 0.45 16 25 C -0.08 0.05 8.61 22.25 0.19 0.24 16 26 C -0.21 -0.28 9.04 22.37 0.20 -0.08 16 27 H 0.11 -0.63 8.14 -2.39 -0.02 -0.65 16 28 H 0.06 -0.25 7.67 -2.39 -0.02 -0.27 16 29 H 0.06 -0.29 7.66 -2.38 -0.02 -0.31 16 30 H 0.13 0.35 8.06 -2.91 -0.02 0.33 16 31 H 0.15 -0.44 8.05 -2.91 -0.02 -0.47 16 32 H 0.10 -0.68 7.70 -2.39 -0.02 -0.70 16 33 H 0.09 -0.46 8.14 -2.39 -0.02 -0.47 16 34 H 0.41 -2.80 7.86 -92.71 -0.73 -3.53 16 35 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.08 0.22 8.14 -2.39 -0.02 0.21 16 37 H 0.06 0.63 6.49 -2.39 -0.02 0.61 16 38 H 0.16 -0.09 6.19 -2.91 -0.02 -0.11 16 39 H 0.11 -1.06 7.96 -2.39 -0.02 -1.08 16 40 H 0.40 -4.17 8.74 -74.06 -0.65 -4.81 16 41 H -0.28 0.38 7.11 99.48 0.71 1.09 16 42 H -0.30 -1.15 7.11 99.48 0.71 -0.45 16 43 H 0.43 -2.82 8.19 -92.71 -0.76 -3.58 16 44 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 45 H 0.09 -0.24 6.29 -2.39 -0.02 -0.25 16 46 H 0.14 -0.68 6.64 -2.91 -0.02 -0.70 16 47 H 0.14 -0.35 6.30 -2.91 -0.02 -0.37 16 Total: 0.00 -22.79 385.54 -0.50 -23.29 By element: Atomic # 1 Polarization: -14.27 SS G_CDS: -1.06 Total: -15.34 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 4.82 Total: 7.34 kcal Atomic # 7 Polarization: 0.93 SS G_CDS: -3.41 Total: -2.48 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -2.95 Total: -11.29 kcal Atomic # 14 Polarization: -3.63 SS G_CDS: 2.10 Total: -1.53 kcal Total: -22.79 -0.50 -23.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100430_13940406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.654 kcal (2) G-P(sol) polarization free energy of solvation -22.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds