Wall clock time and date at job start Sun Mar 7 2021 05:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35896 * 117.00039 * 2 1 4 4 C 1.38738 * 120.05353 * 359.72616 * 3 2 1 5 5 C 1.38148 * 119.94048 * 179.74738 * 4 3 2 6 6 C 1.38261 * 120.05800 * 0.50500 * 5 4 3 7 7 C 1.50703 * 119.94589 * 179.75166 * 6 5 4 8 8 H 1.09000 * 112.85032 * 168.82741 * 7 6 5 9 9 C 1.53788 * 113.60847 * 300.01683 * 7 6 5 10 10 C 1.53782 * 87.07634 * 139.98180 * 9 7 6 11 11 H 1.09006 * 113.61165 * 89.20141 * 10 9 7 12 12 N 1.46502 * 113.61277 * 220.01507 * 10 9 7 13 13 C 1.34779 * 119.99953 * 205.00079 * 12 10 9 14 14 O 1.21285 * 120.00016 * 0.02562 * 13 12 10 15 15 C 1.50700 * 119.99855 * 180.02562 * 13 12 10 16 16 C 1.50697 * 109.47128 * 180.02562 * 15 13 12 17 17 C 1.34857 * 125.88782 * 274.69283 * 16 15 13 18 18 C 1.40890 * 107.41515 * 179.88424 * 17 16 15 19 19 C 1.34850 * 107.41786 * 0.37487 * 18 17 16 20 20 C 1.50699 * 125.89263 * 179.80439 * 19 18 17 21 21 O 1.42896 * 109.47381 * 119.95933 * 20 19 18 22 22 Si 1.86309 * 109.47010 * 359.96070 * 20 19 18 23 23 N 1.36340 * 125.89470 * 94.99489 * 16 15 13 24 24 C 1.53774 * 113.61627 * 37.51346 * 7 6 5 25 25 C 1.38262 * 120.11048 * 359.76434 * 6 5 4 26 26 C 1.38145 * 120.05942 * 359.97438 * 25 6 5 27 27 H 1.09000 * 109.47187 * 300.00222 * 1 2 3 28 28 H 1.09001 * 109.46558 * 60.00270 * 1 2 3 29 29 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 30 30 H 1.07995 * 120.02746 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.97067 * 180.22662 * 5 4 3 32 32 H 1.09002 * 113.61174 * 254.53085 * 9 7 6 33 33 H 1.08993 * 113.61316 * 25.43274 * 9 7 6 34 34 H 0.96992 * 119.99774 * 25.00627 * 12 10 9 35 35 H 1.09007 * 109.46934 * 300.00072 * 15 13 12 36 36 H 1.08998 * 109.47379 * 60.00040 * 15 13 12 37 37 H 1.07995 * 126.28932 * 0.02562 * 17 16 15 38 38 H 1.08000 * 126.29231 * 180.17014 * 18 17 16 39 39 H 1.09003 * 109.47333 * 239.95992 * 20 19 18 40 40 H 0.96704 * 114.00461 * 180.02562 * 21 20 19 41 41 H 1.48491 * 109.99914 * 59.99780 * 22 20 19 42 42 H 1.48500 * 110.00058 * 181.32080 * 22 20 19 43 43 H 0.97005 * 125.63652 * 359.96493 * 23 16 15 44 44 H 1.09000 * 113.61671 * 334.57276 * 24 7 6 45 45 H 1.08997 * 113.61482 * 105.47492 * 24 7 6 46 46 H 1.08009 * 119.97583 * 179.97438 * 25 6 5 47 47 H 1.07999 * 120.03439 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3751 -0.0057 5 6 1.9211 3.6048 -0.0004 6 6 3.3019 3.6758 0.0000 7 6 3.9860 5.0186 0.0001 8 1 5.0562 4.9484 0.1951 9 6 3.6379 5.8873 -1.2202 10 6 3.5927 7.0846 -0.2562 11 1 4.5550 7.5813 -0.1315 12 7 2.5009 8.0210 -0.5344 13 6 2.6047 9.3096 -0.1530 14 8 3.6022 9.6940 0.4200 15 6 1.4814 10.2727 -0.4386 16 6 1.8450 11.6381 0.0852 17 6 1.6591 12.0759 1.3471 18 6 2.1378 13.3996 1.4091 19 6 2.5904 13.7230 0.1806 20 6 3.1894 15.0465 -0.2201 21 8 4.5247 14.8434 -0.6865 22 14 3.2127 16.1886 1.2517 23 7 2.4133 12.6458 -0.6362 24 6 3.2696 6.0749 0.8578 25 6 4.0560 2.5170 0.0001 26 6 3.4314 1.2849 0.0003 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2130 2.3201 -0.0106 31 1 1.3342 4.5114 -0.0012 32 1 4.4403 5.9488 -1.9555 33 1 2.6721 5.6482 -1.6651 34 1 1.7034 7.7137 -0.9929 35 1 1.3158 10.3290 -1.5146 36 1 0.5717 9.9256 0.0513 37 1 1.2253 11.5143 2.1612 38 1 2.1389 14.0389 2.2795 39 1 2.5905 15.4906 -1.0152 40 1 4.9730 15.6548 -0.9617 41 1 4.0261 15.5946 2.3427 42 1 3.7718 17.5080 0.8619 43 1 2.6524 12.6033 -1.5753 44 1 2.2030 5.8872 0.9810 45 1 3.7745 6.2880 1.8000 46 1 5.1346 2.5751 0.0000 47 1 4.0209 0.3799 0.0007 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100430_14644196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:21:01 Heat of formation + Delta-G solvation = -7.018827 kcal Electronic energy + Delta-G solvation = -28301.509684 eV Core-core repulsion = 24224.688751 eV Total energy + Delta-G solvation = -4076.820933 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.31360 -41.53250 -40.74296 -39.61363 -37.90789 -37.77345 -34.62866 -33.09802 -32.03653 -31.93052 -31.15266 -29.48180 -28.24284 -26.67422 -25.88707 -24.81426 -23.70217 -22.52602 -21.69407 -21.32813 -21.08748 -20.33909 -19.16803 -18.62889 -18.26383 -18.06119 -17.57036 -17.01060 -16.65958 -16.38071 -16.13268 -15.94399 -15.86981 -15.39888 -15.07146 -14.85611 -14.63727 -14.58126 -14.41751 -14.26626 -14.13412 -13.99852 -13.62240 -13.43902 -13.36346 -13.18729 -13.00904 -12.91220 -12.76068 -12.47676 -12.32804 -12.09995 -11.98204 -11.62146 -11.55586 -11.42189 -10.91129 -10.63295 -10.02727 -9.95847 -9.79398 -9.01801 -8.93863 -4.89521 0.38398 0.41589 1.04618 1.31216 1.61221 1.62594 1.86590 1.98937 2.33405 2.38659 2.52095 2.73381 3.36326 3.49367 3.68231 3.71825 3.74164 3.87734 3.91613 3.95513 4.00937 4.04204 4.21383 4.23804 4.27635 4.31025 4.36282 4.41702 4.49316 4.50049 4.62617 4.65410 4.72118 4.73593 4.76405 4.81502 4.84584 4.97871 5.04357 5.11614 5.19692 5.24667 5.31061 5.34844 5.40542 5.59100 5.72094 5.83175 6.00902 6.13525 6.44419 6.51508 6.56716 6.69248 7.29635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C 0.103 3.897 4 C -0.210 4.210 5 C -0.077 4.077 6 C -0.110 4.110 7 C -0.063 4.063 8 H 0.101 0.899 9 C -0.122 4.122 10 C 0.119 3.881 11 H 0.089 0.911 12 N -0.706 5.706 13 C 0.509 3.491 14 O -0.582 6.582 15 C -0.066 4.066 16 C 0.033 3.967 17 C -0.200 4.200 18 C -0.205 4.205 19 C 0.016 3.984 20 C -0.064 4.064 21 O -0.566 6.566 22 Si 0.791 3.209 23 N -0.538 5.538 24 C -0.141 4.141 25 C -0.083 4.083 26 C -0.169 4.169 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.113 0.887 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.419 0.581 35 H 0.131 0.869 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.149 0.851 39 H 0.098 0.902 40 H 0.397 0.603 41 H -0.310 1.310 42 H -0.277 1.277 43 H 0.419 0.581 44 H 0.101 0.899 45 H 0.060 0.940 46 H 0.141 0.859 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.891 -0.029 -4.371 9.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.257 6.257 3 C 0.058 3.942 4 C -0.229 4.229 5 C -0.095 4.095 6 C -0.110 4.110 7 C -0.082 4.082 8 H 0.120 0.880 9 C -0.160 4.160 10 C 0.014 3.986 11 H 0.107 0.893 12 N -0.358 5.358 13 C 0.296 3.704 14 O -0.461 6.461 15 C -0.106 4.106 16 C -0.081 4.081 17 C -0.224 4.224 18 C -0.230 4.230 19 C -0.097 4.097 20 C -0.172 4.172 21 O -0.377 6.377 22 Si 0.695 3.305 23 N -0.133 5.133 24 C -0.179 4.179 25 C -0.101 4.101 26 C -0.187 4.187 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.131 0.869 30 H 0.162 0.838 31 H 0.164 0.836 32 H 0.097 0.903 33 H 0.123 0.877 34 H 0.257 0.743 35 H 0.149 0.851 36 H 0.165 0.835 37 H 0.161 0.839 38 H 0.167 0.833 39 H 0.116 0.884 40 H 0.247 0.753 41 H -0.238 1.238 42 H -0.203 1.203 43 H 0.256 0.744 44 H 0.119 0.881 45 H 0.079 0.921 46 H 0.159 0.841 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.741 -0.080 -3.481 7.587 hybrid contribution 0.963 -0.196 -1.096 1.472 sum -5.777 -0.276 -4.577 7.375 Atomic orbital electron populations 1.23303 0.76584 1.05367 1.02224 1.86047 1.23373 1.27417 1.88818 1.19336 0.92820 0.84795 0.97224 1.21474 1.00987 0.92064 1.08349 1.21030 0.94022 0.97510 0.96946 1.19685 0.93701 0.94456 1.03194 1.21221 0.99847 0.89717 0.97380 0.88029 1.23407 1.03770 0.92676 0.96193 1.22403 0.91376 0.87919 0.96947 0.89290 1.45852 1.21470 1.08345 1.60148 1.21129 0.88304 0.83373 0.77549 1.90769 1.33943 1.78424 1.42967 1.20274 0.98041 0.86968 1.05325 1.19954 1.04616 0.90940 0.92597 1.20839 1.08938 0.96214 0.96436 1.20870 1.07962 0.97840 0.96297 1.19912 1.07548 0.90524 0.91709 1.24722 0.84186 0.98249 1.10009 1.86566 1.27357 1.38077 1.85673 0.93592 0.89290 0.73528 0.74041 1.41854 1.48305 1.10979 1.12146 1.23595 1.02022 0.94654 0.97676 1.21103 1.00735 0.90857 0.97388 1.20642 0.91807 0.99301 1.06995 0.91770 0.91604 0.86865 0.83790 0.83610 0.90317 0.87745 0.74315 0.85145 0.83490 0.83884 0.83348 0.88408 0.75260 1.23791 1.20314 0.74390 0.88116 0.92139 0.84104 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 113.37 1.11 1.05 16 2 O -0.34 -1.76 10.50 -92.39 -0.97 -2.73 16 3 C 0.10 0.48 6.69 22.51 0.15 0.63 16 4 C -0.21 -0.10 9.04 22.37 0.20 0.10 16 5 C -0.08 0.13 8.60 22.25 0.19 0.32 16 6 C -0.11 0.04 5.29 -19.85 -0.11 -0.06 16 7 C -0.06 0.17 3.98 -11.01 -0.04 0.13 16 8 H 0.10 -0.27 8.09 -2.39 -0.02 -0.29 16 9 C -0.12 0.61 7.30 31.12 0.23 0.84 16 10 C 0.12 -0.16 4.24 45.52 0.19 0.03 16 11 H 0.09 0.42 7.46 -2.38 -0.02 0.40 16 12 N -0.71 2.88 5.35 -440.02 -2.36 0.53 16 13 C 0.51 1.21 7.82 87.66 0.69 1.89 16 14 O -0.58 -8.46 15.63 -3.05 -0.05 -8.50 16 15 C -0.07 0.28 6.24 29.10 0.18 0.46 16 16 C 0.03 0.14 5.66 41.08 0.23 0.37 16 17 C -0.20 -1.39 10.77 22.14 0.24 -1.15 16 18 C -0.20 -1.53 9.37 22.14 0.21 -1.32 16 19 C 0.02 0.11 6.54 41.08 0.27 0.38 16 20 C -0.06 -0.12 3.07 71.24 0.22 0.09 16 21 O -0.57 -2.86 12.86 -148.98 -1.92 -4.78 16 22 Si 0.79 0.41 30.59 68.60 2.10 2.51 16 23 N -0.54 -2.49 6.07 -171.12 -1.04 -3.53 16 24 C -0.14 0.28 7.25 31.12 0.23 0.50 16 25 C -0.08 -0.12 9.70 22.25 0.22 0.10 16 26 C -0.17 -0.71 9.99 22.37 0.22 -0.49 16 27 H 0.06 -0.31 7.67 -2.39 -0.02 -0.33 16 28 H 0.07 -0.34 7.65 -2.39 -0.02 -0.36 16 29 H 0.11 -0.67 8.14 -2.39 -0.02 -0.69 16 30 H 0.14 -0.54 6.30 -2.91 -0.02 -0.56 16 31 H 0.15 -0.99 6.65 -2.91 -0.02 -1.01 16 32 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 33 H 0.10 -0.82 7.70 -2.39 -0.02 -0.84 16 34 H 0.42 -4.82 8.73 -92.71 -0.81 -5.63 16 35 H 0.13 -1.36 8.14 -2.38 -0.02 -1.38 16 36 H 0.15 -1.49 8.14 -2.39 -0.02 -1.51 16 37 H 0.14 0.61 8.06 -2.91 -0.02 0.59 16 38 H 0.15 0.63 6.22 -2.91 -0.02 0.61 16 39 H 0.10 -0.34 7.96 -2.39 -0.02 -0.36 16 40 H 0.40 -1.51 8.74 -74.05 -0.65 -2.16 16 41 H -0.31 -3.13 7.11 99.48 0.71 -2.42 16 42 H -0.28 -0.77 7.11 99.48 0.71 -0.06 16 43 H 0.42 0.27 8.96 -92.70 -0.83 -0.56 16 44 H 0.10 -0.45 6.31 -2.39 -0.02 -0.47 16 45 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 46 H 0.14 -0.28 8.05 -2.91 -0.02 -0.30 16 47 H 0.13 0.41 8.06 -2.91 -0.02 0.39 16 Total: 0.00 -29.04 389.89 -0.83 -29.86 By element: Atomic # 1 Polarization: -16.00 SS G_CDS: -1.22 Total: -17.22 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 4.63 Total: 3.86 kcal Atomic # 7 Polarization: 0.39 SS G_CDS: -3.40 Total: -3.00 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -2.93 Total: -16.01 kcal Atomic # 14 Polarization: 0.41 SS G_CDS: 2.10 Total: 2.51 kcal Total: -29.04 -0.83 -29.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100430_14644196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.845 kcal (2) G-P(sol) polarization free energy of solvation -29.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds