Wall clock time and date at job start Sun Mar 7 2021 05:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35907 * 116.99529 * 2 1 4 4 C 1.38737 * 120.04955 * 179.97438 * 3 2 1 5 5 C 1.38147 * 119.93953 * 179.97438 * 4 3 2 6 6 C 1.38263 * 120.05468 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94200 * 180.02562 * 6 5 4 8 8 H 1.09005 * 112.85059 * 348.80352 * 7 6 5 9 9 C 1.53782 * 113.61576 * 119.99631 * 7 6 5 10 10 C 1.53781 * 87.07894 * 139.98242 * 9 7 6 11 11 H 1.08997 * 113.61619 * 89.20251 * 10 9 7 12 12 N 1.46501 * 113.61641 * 220.02235 * 10 9 7 13 13 C 1.34777 * 120.00423 * 203.47503 * 12 10 9 14 14 O 1.21624 * 119.99584 * 359.97438 * 13 12 10 15 15 C 1.47264 * 120.00252 * 180.02562 * 13 12 10 16 16 C 1.36331 * 126.96646 * 179.97438 * 15 13 12 17 17 C 1.50997 * 126.79364 * 0.05117 * 16 15 13 18 18 C 1.53396 * 108.24792 * 164.26190 * 17 16 15 19 19 C 1.53160 * 109.04241 * 48.48097 * 18 17 16 20 20 C 1.53120 * 109.53913 * 290.43813 * 19 18 17 21 21 N 1.35217 * 108.65705 * 180.02562 * 16 15 13 22 22 C 1.36418 * 109.90323 * 359.97438 * 21 16 15 23 23 C 1.50699 * 125.49618 * 180.02562 * 22 21 16 24 24 O 1.42894 * 109.47188 * 29.99939 * 23 22 21 25 25 Si 1.86298 * 109.46950 * 150.00613 * 23 22 21 26 26 C 1.34502 * 109.00936 * 0.28193 * 22 21 16 27 27 C 1.53784 * 87.17746 * 334.61156 * 10 9 7 28 28 C 1.38265 * 120.11364 * 0.27289 * 6 5 4 29 29 C 1.38146 * 120.05579 * 359.45316 * 28 6 5 30 30 H 1.09001 * 109.47017 * 299.99772 * 1 2 3 31 31 H 1.09000 * 109.46948 * 59.99735 * 1 2 3 32 32 H 1.09001 * 109.46555 * 179.97438 * 1 2 3 33 33 H 1.07997 * 120.02992 * 0.02562 * 4 3 2 34 34 H 1.07999 * 119.97182 * 180.02562 * 5 4 3 35 35 H 1.08996 * 113.61165 * 25.43851 * 9 7 6 36 36 H 1.09001 * 113.69144 * 254.53734 * 9 7 6 37 37 H 0.97002 * 120.00063 * 23.46792 * 12 10 9 38 38 H 1.08997 * 109.70603 * 283.94688 * 17 16 15 39 39 H 1.08997 * 109.71274 * 44.53180 * 17 16 15 40 40 H 1.09003 * 109.54375 * 168.34630 * 18 17 16 41 41 H 1.09002 * 109.54666 * 288.60962 * 18 17 16 42 42 H 1.08994 * 109.46263 * 50.44148 * 19 18 17 43 43 H 1.09003 * 109.46160 * 170.40780 * 19 18 17 44 44 H 1.09006 * 109.53201 * 291.13823 * 20 19 18 45 45 H 1.09000 * 109.58627 * 170.80890 * 20 19 18 46 46 H 1.09006 * 109.46662 * 270.00209 * 23 22 21 47 47 H 0.96709 * 113.99337 * 60.00344 * 24 23 22 48 48 H 1.48506 * 109.99834 * 180.02562 * 25 23 22 49 49 H 1.48502 * 110.00011 * 301.31529 * 25 23 22 50 50 H 1.08000 * 126.81689 * 179.69778 * 26 22 21 51 51 H 1.08992 * 113.61710 * 139.93625 * 27 10 9 52 52 H 1.09001 * 113.61542 * 270.84665 * 27 10 9 53 53 H 1.07998 * 119.96984 * 179.72595 * 28 6 5 54 54 H 1.08001 * 120.02741 * 180.27451 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4314 1.2849 0.0005 5 6 4.0561 2.5171 0.0000 6 6 3.3018 3.6758 -0.0005 7 6 3.9859 5.0186 -0.0017 8 1 5.0562 4.9486 0.1930 9 6 3.6375 5.8865 -1.2225 10 6 3.5926 7.0845 -0.2593 11 1 4.5548 7.5813 -0.1352 12 7 2.5007 8.0207 -0.5376 13 6 2.5914 9.3022 -0.1301 14 8 3.5795 9.6812 0.4692 15 6 1.4935 10.2431 -0.4094 16 6 1.4356 11.5609 -0.0648 17 6 2.4872 12.3480 0.6798 18 6 2.1872 13.8414 0.4990 19 6 0.7056 14.0929 0.7947 20 6 -0.1504 13.4693 -0.3112 21 7 0.2626 12.0714 -0.5027 22 6 -0.4583 11.1017 -1.1361 23 6 -1.8177 11.2882 -1.7592 24 8 -1.9500 12.6345 -2.2195 25 14 -2.0075 10.1187 -3.1969 26 6 0.2375 9.9509 -1.1098 27 6 3.2709 6.0773 0.8574 28 6 1.9210 3.6048 0.0052 29 6 1.2915 2.3751 0.0000 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 4.0209 0.3800 0.0005 34 1 5.1345 2.5752 0.0000 35 1 2.6714 5.6471 -1.6668 36 1 4.4387 5.9482 -1.9590 37 1 1.7125 7.7183 -1.0153 38 1 2.4562 12.0926 1.7390 39 1 3.4731 12.1190 0.2753 40 1 2.8002 14.4226 1.1879 41 1 2.4095 14.1365 -0.5265 42 1 0.4450 13.6428 1.7526 43 1 0.5205 15.1663 0.8357 44 1 -0.0067 14.0230 -1.2391 45 1 -1.2011 13.5032 -0.0230 46 1 -2.5889 11.0804 -1.0175 47 1 -1.2944 12.8894 -2.8832 48 1 -3.3439 10.2932 -3.8205 49 1 -0.9424 10.3707 -4.2006 50 1 -0.0670 9.0009 -1.5236 51 1 3.7773 6.2921 1.7983 52 1 2.2044 5.8902 0.9827 53 1 1.3342 4.5114 0.0092 54 1 0.2128 2.3202 0.0000 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100430_16915396.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:21:13 Heat of formation + Delta-G solvation = -9.809564 kcal Electronic energy + Delta-G solvation = -35022.019573 eV Core-core repulsion = 30505.776245 eV Total energy + Delta-G solvation = -4516.243327 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.193 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.77627 -41.43883 -40.59090 -39.40861 -38.07962 -37.71461 -36.87596 -34.43178 -33.47046 -31.98046 -31.23103 -31.06960 -29.45013 -28.20928 -26.70617 -26.59340 -25.62535 -24.63662 -23.97569 -23.44009 -22.07427 -21.71580 -21.11561 -20.37106 -19.58221 -19.10607 -18.81540 -17.66934 -17.25242 -17.04743 -16.91664 -16.61250 -16.60305 -16.08388 -15.93919 -15.72718 -15.58588 -15.38893 -15.30266 -15.15493 -14.96958 -14.71198 -14.58063 -14.46948 -14.27197 -14.23225 -14.00343 -13.88574 -13.35921 -13.20141 -13.12961 -12.92970 -12.74649 -12.70022 -12.40488 -12.27797 -12.16422 -12.03651 -12.00307 -11.85689 -11.76214 -11.54997 -11.47966 -11.33779 -10.89387 -10.79546 -9.98363 -9.90117 -9.53755 -9.03240 -8.95744 -4.90485 0.44244 0.47314 0.74158 1.07343 1.45484 1.68685 1.79774 2.05130 2.43028 2.49497 2.57079 2.79545 3.22227 3.47884 3.56558 3.58397 3.67980 3.77848 3.80394 3.81178 3.83486 3.95013 4.02159 4.08063 4.15316 4.28744 4.29537 4.32432 4.35803 4.39222 4.40317 4.48089 4.52905 4.55653 4.63166 4.69501 4.74987 4.76631 4.77513 4.80170 4.83078 4.84804 4.91714 4.95193 5.00487 5.06093 5.12349 5.16384 5.18798 5.19167 5.29517 5.41947 5.46960 5.69230 5.75634 5.79567 5.88879 6.04300 6.22495 6.35922 6.49396 6.75315 7.42485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.343 6.343 3 C 0.102 3.898 4 C -0.169 4.169 5 C -0.083 4.083 6 C -0.109 4.109 7 C -0.061 4.061 8 H 0.104 0.896 9 C -0.123 4.123 10 C 0.121 3.879 11 H 0.094 0.906 12 N -0.703 5.703 13 C 0.589 3.411 14 O -0.592 6.592 15 C -0.255 4.255 16 C 0.101 3.899 17 C -0.054 4.054 18 C -0.124 4.124 19 C -0.135 4.135 20 C 0.105 3.895 21 N -0.429 5.429 22 C -0.018 4.018 23 C -0.055 4.055 24 O -0.545 6.545 25 Si 0.801 3.199 26 C -0.160 4.160 27 C -0.141 4.141 28 C -0.077 4.077 29 C -0.210 4.210 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.112 0.888 33 H 0.129 0.871 34 H 0.142 0.858 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.414 0.586 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.107 0.893 44 H 0.092 0.908 45 H 0.098 0.902 46 H 0.130 0.870 47 H 0.384 0.616 48 H -0.297 1.297 49 H -0.292 1.292 50 H 0.185 0.815 51 H 0.061 0.939 52 H 0.097 0.903 53 H 0.146 0.854 54 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.742 0.043 -1.623 5.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.257 6.257 3 C 0.057 3.943 4 C -0.188 4.188 5 C -0.100 4.100 6 C -0.109 4.109 7 C -0.079 4.079 8 H 0.122 0.878 9 C -0.161 4.161 10 C 0.016 3.984 11 H 0.112 0.888 12 N -0.354 5.354 13 C 0.379 3.621 14 O -0.474 6.474 15 C -0.265 4.265 16 C -0.018 4.018 17 C -0.091 4.091 18 C -0.161 4.161 19 C -0.172 4.172 20 C -0.015 4.015 21 N -0.105 5.105 22 C -0.127 4.127 23 C -0.164 4.164 24 O -0.353 6.353 25 Si 0.705 3.295 26 C -0.183 4.183 27 C -0.180 4.180 28 C -0.095 4.095 29 C -0.228 4.228 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.131 0.869 33 H 0.147 0.853 34 H 0.160 0.840 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.251 0.749 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.125 0.875 44 H 0.110 0.890 45 H 0.116 0.884 46 H 0.148 0.852 47 H 0.234 0.766 48 H -0.224 1.224 49 H -0.219 1.219 50 H 0.202 0.798 51 H 0.080 0.920 52 H 0.115 0.885 53 H 0.163 0.837 54 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.766 0.386 -1.619 5.048 hybrid contribution 0.075 0.946 -0.271 0.987 sum -4.690 1.332 -1.889 5.229 Atomic orbital electron populations 1.23295 0.76636 1.05298 1.02234 1.86047 1.23332 1.27444 1.88859 1.19337 0.92830 0.84773 0.97328 1.20638 0.91785 0.99295 1.07069 1.21100 1.00745 0.90807 0.97389 1.19693 0.93682 0.94490 1.03077 1.21244 0.99901 0.89572 0.97219 0.87780 1.23408 1.03812 0.92639 0.96254 1.22444 0.91233 0.87776 0.96938 0.88786 1.45625 1.22115 1.08731 1.58881 1.17601 0.85049 0.82176 0.77260 1.90734 1.34084 1.78626 1.43959 1.20015 0.98341 0.93765 1.14399 1.20563 0.88675 0.93129 0.99413 1.20422 0.95587 0.93837 0.99283 1.21695 0.96659 0.94759 1.03008 1.21925 0.94407 1.02985 0.97891 1.22245 1.00548 0.77814 1.00889 1.44028 1.13831 1.10313 1.42359 1.20993 0.97151 0.89378 1.05183 1.25041 0.93346 0.90802 1.07176 1.86567 1.59186 1.27756 1.61742 0.93540 0.76027 0.85884 0.74095 1.22010 0.92743 0.98562 1.05001 1.23632 1.01879 0.94753 0.97744 1.21046 0.94098 0.97512 0.96868 1.21465 1.00980 0.92037 1.08326 0.91806 0.91570 0.86942 0.85317 0.84031 0.87878 0.90103 0.74859 0.90299 0.90140 0.89324 0.91364 0.91329 0.87468 0.88962 0.88376 0.85210 0.76636 1.22443 1.21868 0.79829 0.91978 0.88476 0.83659 0.83793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 113.37 1.11 1.06 16 2 O -0.34 -1.79 10.50 -92.50 -0.97 -2.77 16 3 C 0.10 0.48 6.69 22.51 0.15 0.64 16 4 C -0.17 -0.72 9.99 22.37 0.22 -0.50 16 5 C -0.08 -0.12 9.70 22.25 0.22 0.10 16 6 C -0.11 0.02 5.29 -19.85 -0.11 -0.09 16 7 C -0.06 0.15 3.98 -10.95 -0.04 0.11 16 8 H 0.10 -0.31 8.09 -2.38 -0.02 -0.32 16 9 C -0.12 0.50 7.30 31.12 0.23 0.73 16 10 C 0.12 0.01 4.21 45.52 0.19 0.21 16 11 H 0.09 0.45 7.50 -2.39 -0.02 0.44 16 12 N -0.70 -0.22 5.36 -443.45 -2.38 -2.59 16 13 C 0.59 4.52 7.81 86.62 0.68 5.20 16 14 O -0.59 -9.04 14.95 -4.11 -0.06 -9.10 16 15 C -0.26 -1.35 6.28 -19.12 -0.12 -1.47 16 16 C 0.10 0.54 6.57 41.69 0.27 0.81 16 17 C -0.05 -0.24 5.32 30.07 0.16 -0.08 16 18 C -0.12 0.17 5.98 30.78 0.18 0.35 16 19 C -0.13 0.50 5.92 30.69 0.18 0.68 16 20 C 0.10 -0.29 5.32 86.32 0.46 0.17 16 21 N -0.43 -0.62 3.11 -493.63 -1.54 -2.15 16 22 C -0.02 0.01 6.14 40.99 0.25 0.26 16 23 C -0.06 0.21 2.99 71.24 0.21 0.42 16 24 O -0.55 1.13 10.68 -148.98 -1.59 -0.46 16 25 Si 0.80 -4.17 31.12 68.60 2.13 -2.04 16 26 C -0.16 0.19 9.09 23.64 0.21 0.40 16 27 C -0.14 0.14 7.27 31.18 0.23 0.37 16 28 C -0.08 0.09 8.62 22.25 0.19 0.28 16 29 C -0.21 -0.15 9.04 22.36 0.20 0.06 16 30 H 0.06 -0.30 7.66 -2.39 -0.02 -0.31 16 31 H 0.07 -0.34 7.66 -2.39 -0.02 -0.35 16 32 H 0.11 -0.65 8.14 -2.39 -0.02 -0.67 16 33 H 0.13 0.42 8.06 -2.91 -0.02 0.39 16 34 H 0.14 -0.30 8.05 -2.91 -0.02 -0.33 16 35 H 0.10 -0.69 7.70 -2.39 -0.02 -0.71 16 36 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 37 H 0.41 -2.47 7.84 -92.71 -0.73 -3.19 16 38 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.08 0.65 7.40 -2.39 -0.02 0.63 16 40 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 41 H 0.07 -0.08 8.12 -2.39 -0.02 -0.10 16 42 H 0.07 -0.14 8.11 -2.39 -0.02 -0.16 16 43 H 0.11 -0.78 8.14 -2.39 -0.02 -0.80 16 44 H 0.09 -0.44 7.94 -2.38 -0.02 -0.46 16 45 H 0.10 -0.28 7.69 -2.39 -0.02 -0.30 16 46 H 0.13 -0.72 7.96 -2.38 -0.02 -0.74 16 47 H 0.38 -2.37 8.63 -74.05 -0.64 -3.01 16 48 H -0.30 -0.58 7.11 99.48 0.71 0.13 16 49 H -0.29 -0.24 7.11 99.48 0.71 0.46 16 50 H 0.18 -1.69 6.54 -2.91 -0.02 -1.71 16 51 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 52 H 0.10 -0.27 6.31 -2.39 -0.02 -0.29 16 53 H 0.15 -0.86 6.64 -2.91 -0.02 -0.88 16 54 H 0.14 -0.51 6.30 -2.91 -0.02 -0.53 16 Total: 0.00 -22.64 426.30 0.29 -22.35 By element: Atomic # 1 Polarization: -12.55 SS G_CDS: -0.39 Total: -12.94 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 5.09 Total: 9.71 kcal Atomic # 7 Polarization: -0.83 SS G_CDS: -3.91 Total: -4.75 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -2.62 Total: -12.33 kcal Atomic # 14 Polarization: -4.17 SS G_CDS: 2.13 Total: -2.04 kcal Total: -22.64 0.29 -22.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100430_16915396.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.538 kcal (2) G-P(sol) polarization free energy of solvation -22.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds