Wall clock time and date at job start Sun Mar 7 2021 05:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35902 * 116.99530 * 2 1 4 4 C 1.38734 * 120.05393 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94577 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05537 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.94583 * 179.97438 * 6 5 4 8 8 H 1.09002 * 112.84782 * 9.67048 * 7 6 5 9 9 C 1.53786 * 113.61519 * 140.86458 * 7 6 5 10 10 C 1.54049 * 86.98426 * 140.01979 * 9 7 6 11 11 H 1.09003 * 113.61268 * 89.11946 * 10 9 7 12 12 N 1.46497 * 113.61947 * 220.02008 * 10 9 7 13 13 C 1.34773 * 120.00221 * 252.49496 * 12 10 9 14 14 O 1.21278 * 119.99816 * 0.02562 * 13 12 10 15 15 C 1.50703 * 120.00031 * 179.97438 * 13 12 10 16 16 O 1.42901 * 109.46971 * 180.02562 * 15 13 12 17 17 C 1.35997 * 116.99881 * 180.02562 * 16 15 13 18 18 C 1.39153 * 120.07383 * 179.72805 * 17 16 15 19 19 O 1.35996 * 120.07308 * 0.02562 * 18 17 16 20 20 C 1.42899 * 117.00273 * 179.97438 * 19 18 17 21 21 C 1.38564 * 119.85313 * 179.71826 * 18 17 16 22 22 C 1.38240 * 120.00038 * 0.55551 * 21 18 17 23 23 C 1.50695 * 119.92703 * 179.69454 * 22 21 18 24 24 O 1.42910 * 109.46850 * 65.02426 * 23 22 21 25 25 Si 1.86297 * 109.47298 * 185.01997 * 23 22 21 26 26 C 1.38256 * 120.14521 * 359.71854 * 22 21 18 27 27 C 1.38239 * 120.14522 * 0.02562 * 26 22 21 28 28 C 1.53781 * 113.61630 * 238.47406 * 7 6 5 29 29 C 1.38267 * 120.11178 * 0.27648 * 6 5 4 30 30 C 1.38152 * 120.05496 * 359.44802 * 29 6 5 31 31 H 1.09003 * 109.47167 * 299.99712 * 1 2 3 32 32 H 1.09000 * 109.47405 * 60.00491 * 1 2 3 33 33 H 1.09000 * 109.46766 * 180.02562 * 1 2 3 34 34 H 1.08001 * 120.02499 * 359.95826 * 4 3 2 35 35 H 1.08000 * 119.97708 * 180.02562 * 5 4 3 36 36 H 1.08992 * 113.61675 * 254.61723 * 9 7 6 37 37 H 1.09000 * 113.60973 * 25.52011 * 9 7 6 38 38 H 0.97001 * 119.99862 * 72.50056 * 12 10 9 39 39 H 1.09003 * 109.47320 * 300.00554 * 15 13 12 40 40 H 1.08995 * 109.47245 * 60.00423 * 15 13 12 41 41 H 1.09000 * 109.46838 * 59.99832 * 20 19 18 42 42 H 1.09004 * 109.47212 * 179.97438 * 20 19 18 43 43 H 1.08994 * 109.46982 * 300.00148 * 20 19 18 44 44 H 1.08008 * 119.99807 * 180.26963 * 21 18 17 45 45 H 1.08998 * 109.47591 * 305.02200 * 23 22 21 46 46 H 0.96702 * 113.99506 * 180.02562 * 24 23 22 47 47 H 1.48497 * 110.00552 * 178.68407 * 25 23 22 48 48 H 1.48506 * 110.00119 * 300.00632 * 25 23 22 49 49 H 1.07998 * 119.92230 * 179.97438 * 26 22 21 50 50 H 1.08001 * 119.99903 * 179.97438 * 27 26 22 51 51 H 1.08999 * 113.61567 * 334.48200 * 28 7 6 52 52 H 1.09000 * 113.61379 * 105.30323 * 28 7 6 53 53 H 1.08003 * 119.97568 * 179.72634 * 29 6 5 54 54 H 1.07993 * 120.02822 * 180.27567 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4312 1.2850 -0.0005 5 6 4.0560 2.5171 -0.0011 6 6 3.3018 3.6759 -0.0016 7 6 3.9858 5.0187 -0.0016 8 1 5.0603 4.9462 -0.1699 9 6 3.2920 6.0635 -0.8914 10 6 3.5889 7.0880 0.2201 11 1 4.5549 7.5814 0.1124 12 7 2.4917 8.0287 0.4596 13 6 2.6066 9.3125 0.0657 14 8 3.6182 9.6888 -0.4875 15 6 1.4777 10.2801 0.3116 16 8 1.8360 11.5682 -0.1928 17 6 0.9209 12.5639 -0.0494 18 6 1.2056 13.8448 -0.5125 19 8 2.3995 14.1036 -1.1101 20 6 2.6227 15.4410 -1.5614 21 6 0.2675 14.8545 -0.3692 22 6 -0.9435 14.5909 0.2431 23 6 -1.9598 15.6919 0.4042 24 8 -2.4116 16.1153 -0.8838 25 14 -3.4071 15.0613 1.3934 26 6 -1.2242 13.3196 0.7083 27 6 -0.2948 12.3066 0.5638 28 6 3.6085 5.9023 1.1991 29 6 1.9209 3.6048 0.0042 30 6 1.2913 2.3751 -0.0010 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 4.0208 0.3801 -0.0003 35 1 5.1344 2.5753 -0.0019 36 1 3.8203 6.2631 -1.8236 37 1 2.2286 5.8747 -1.0384 38 1 1.6826 7.7277 0.9018 39 1 0.5801 9.9279 -0.1968 40 1 1.2853 10.3494 1.3822 41 1 2.5648 16.1246 -0.7145 42 1 3.6104 15.5106 -2.0172 43 1 1.8634 15.7079 -2.2964 44 1 0.4844 15.8485 -0.7318 45 1 -1.5037 16.5342 0.9243 46 1 -3.0688 16.8242 -0.8566 47 1 -4.4020 16.1466 1.5865 48 1 -4.0378 13.9125 0.6949 49 1 -2.1713 13.1178 1.1865 50 1 -0.5164 11.3144 0.9285 51 1 2.6315 5.6695 1.6226 52 1 4.3917 5.9706 1.9541 53 1 1.3340 4.5114 0.0082 54 1 0.2128 2.3202 -0.0010 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100430_60476.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:22:42 Heat of formation + Delta-G solvation = -84.802012 kcal Electronic energy + Delta-G solvation = -35954.592682 eV Core-core repulsion = 31018.696584 eV Total energy + Delta-G solvation = -4935.896098 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.181 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.84390 -41.51302 -40.85843 -39.93446 -39.16424 -38.78470 -37.79198 -37.11530 -34.71494 -32.18125 -32.02061 -31.51346 -31.20893 -29.54327 -28.47207 -28.19172 -26.65717 -26.22463 -25.44231 -23.81818 -23.49698 -22.58776 -22.17150 -21.62410 -20.39179 -19.72970 -19.15520 -18.61888 -18.31745 -18.23144 -17.69839 -17.48443 -17.40961 -17.01098 -16.65515 -16.63014 -16.16040 -16.10289 -15.96853 -15.81340 -15.67078 -15.45697 -15.39792 -14.84926 -14.61587 -14.38648 -14.34152 -14.12519 -14.05697 -13.99566 -13.56231 -13.49839 -13.41720 -13.20305 -13.00303 -12.79320 -12.74872 -12.58658 -12.33671 -12.21797 -12.16922 -12.10324 -11.93132 -11.68925 -11.60427 -11.54802 -11.42098 -10.91609 -10.49010 -10.09963 -9.94506 -9.77976 -9.00493 -8.91247 -4.89232 0.16863 0.27533 0.39882 0.42916 1.32138 1.46443 1.52090 1.63993 1.97456 2.31013 2.39476 2.52170 2.61043 2.74733 3.38377 3.48778 3.55689 3.70492 3.72432 3.75340 3.88605 3.89694 3.92348 3.97292 4.01951 4.05898 4.13973 4.17678 4.19710 4.27059 4.27971 4.31096 4.34122 4.36576 4.43299 4.48294 4.50927 4.62380 4.64992 4.66263 4.72484 4.74689 4.77923 4.86162 4.98525 4.99813 5.06909 5.11036 5.11619 5.17765 5.34832 5.39060 5.41480 5.54371 5.59061 5.73325 5.84742 5.97524 6.43934 6.45437 6.55387 6.59554 7.17160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.343 6.343 3 C 0.103 3.897 4 C -0.169 4.169 5 C -0.082 4.082 6 C -0.110 4.110 7 C -0.062 4.062 8 H 0.104 0.896 9 C -0.143 4.143 10 C 0.119 3.881 11 H 0.094 0.906 12 N -0.697 5.697 13 C 0.513 3.487 14 O -0.574 6.574 15 C 0.033 3.967 16 O -0.313 6.313 17 C 0.085 3.915 18 C 0.077 3.923 19 O -0.334 6.334 20 C 0.020 3.980 21 C -0.153 4.153 22 C -0.081 4.081 23 C -0.089 4.089 24 O -0.560 6.560 25 Si 0.773 3.227 26 C -0.113 4.113 27 C -0.159 4.159 28 C -0.121 4.121 29 C -0.077 4.077 30 C -0.211 4.211 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.113 0.887 34 H 0.129 0.871 35 H 0.142 0.858 36 H 0.061 0.939 37 H 0.100 0.900 38 H 0.422 0.578 39 H 0.125 0.875 40 H 0.131 0.869 41 H 0.068 0.932 42 H 0.112 0.888 43 H 0.060 0.940 44 H 0.143 0.857 45 H 0.093 0.907 46 H 0.395 0.605 47 H -0.289 1.289 48 H -0.291 1.291 49 H 0.155 0.845 50 H 0.178 0.822 51 H 0.106 0.894 52 H 0.082 0.918 53 H 0.147 0.853 54 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.556 -0.642 6.446 9.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.257 6.257 3 C 0.058 3.942 4 C -0.188 4.188 5 C -0.100 4.100 6 C -0.110 4.110 7 C -0.081 4.081 8 H 0.122 0.878 9 C -0.181 4.181 10 C 0.014 3.986 11 H 0.112 0.888 12 N -0.351 5.351 13 C 0.299 3.701 14 O -0.452 6.452 15 C -0.045 4.045 16 O -0.227 6.227 17 C 0.039 3.961 18 C 0.032 3.968 19 O -0.249 6.249 20 C -0.074 4.074 21 C -0.171 4.171 22 C -0.082 4.082 23 C -0.196 4.196 24 O -0.370 6.370 25 Si 0.678 3.322 26 C -0.131 4.131 27 C -0.177 4.177 28 C -0.159 4.159 29 C -0.095 4.095 30 C -0.229 4.229 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.131 0.869 34 H 0.147 0.853 35 H 0.160 0.840 36 H 0.080 0.920 37 H 0.118 0.882 38 H 0.260 0.740 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.086 0.914 42 H 0.130 0.870 43 H 0.078 0.922 44 H 0.161 0.839 45 H 0.111 0.889 46 H 0.245 0.755 47 H -0.216 1.216 48 H -0.219 1.219 49 H 0.172 0.828 50 H 0.195 0.805 51 H 0.124 0.876 52 H 0.101 0.899 53 H 0.164 0.836 54 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.831 -1.271 5.755 8.291 hybrid contribution -0.683 0.967 -1.127 1.634 sum -6.514 -0.305 4.628 7.997 Atomic orbital electron populations 1.23296 0.76617 1.05344 1.02203 1.86048 1.23346 1.27459 1.88833 1.19343 0.92840 0.84784 0.97263 1.20647 0.91787 0.99342 1.07011 1.21109 1.00770 0.90824 0.97307 1.19687 0.93666 0.94476 1.03156 1.21222 0.99992 0.89621 0.97290 0.87818 1.23668 1.02176 0.94644 0.97637 1.22551 0.91114 0.87595 0.97326 0.88789 1.45658 1.20835 1.07828 1.60786 1.20596 0.87990 0.83616 0.77900 1.90769 1.32889 1.78469 1.43122 1.22813 0.97117 0.81208 1.03362 1.86225 1.41074 1.17829 1.77579 1.18570 0.90586 0.86280 1.00625 1.18640 0.87186 0.92327 0.98680 1.86188 1.32768 1.32808 1.73091 1.23292 1.03708 0.80608 0.99828 1.21027 0.93857 0.98943 1.03312 1.19255 0.94014 0.94871 1.00032 1.25093 1.04603 0.99478 0.90462 1.86557 1.63179 1.59285 1.27996 0.94047 0.74774 0.77705 0.85669 1.20996 1.00144 0.91341 1.00600 1.21352 0.91478 1.02428 1.02451 1.23414 1.04001 0.92235 0.96228 1.21031 0.94048 0.97484 0.96940 1.21470 1.00959 0.92102 1.08398 0.91583 0.91824 0.86899 0.85305 0.84028 0.92008 0.88168 0.73969 0.85740 0.85174 0.91362 0.86996 0.92151 0.83949 0.88933 0.75506 1.21641 1.21856 0.82779 0.80522 0.87554 0.89920 0.83562 0.83858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 113.37 1.11 1.05 16 2 O -0.34 -1.70 10.50 -92.45 -0.97 -2.67 16 3 C 0.10 0.44 6.69 22.51 0.15 0.59 16 4 C -0.17 -0.65 9.99 22.37 0.22 -0.43 16 5 C -0.08 -0.07 9.70 22.25 0.22 0.15 16 6 C -0.11 0.12 5.29 -19.85 -0.11 0.02 16 7 C -0.06 0.23 3.97 -11.01 -0.04 0.19 16 8 H 0.10 -0.39 8.08 -2.39 -0.02 -0.41 16 9 C -0.14 0.38 7.28 31.21 0.23 0.60 16 10 C 0.12 -0.25 4.25 45.61 0.19 -0.06 16 11 H 0.09 0.33 7.47 -2.39 -0.02 0.32 16 12 N -0.70 3.05 5.36 -439.61 -2.35 0.70 16 13 C 0.51 1.93 7.91 87.66 0.69 2.62 16 14 O -0.57 -9.44 16.10 16.01 0.26 -9.18 16 15 C 0.03 -0.06 5.22 71.24 0.37 0.31 16 16 O -0.31 -2.95 9.46 -67.11 -0.63 -3.59 16 17 C 0.08 0.59 6.70 22.57 0.15 0.74 16 18 C 0.08 0.73 6.70 22.57 0.15 0.88 16 19 O -0.33 -4.05 10.28 -79.64 -0.82 -4.87 16 20 C 0.02 0.06 9.81 113.37 1.11 1.17 16 21 C -0.15 -0.85 8.67 22.35 0.19 -0.66 16 22 C -0.08 -0.21 5.38 -19.86 -0.11 -0.32 16 23 C -0.09 0.10 2.79 71.23 0.20 0.30 16 24 O -0.56 -1.09 12.81 -148.98 -1.91 -3.00 16 25 Si 0.77 -3.03 29.84 68.60 2.05 -0.98 16 26 C -0.11 0.07 8.66 22.27 0.19 0.26 16 27 C -0.16 0.13 9.04 22.35 0.20 0.34 16 28 C -0.12 0.75 7.29 31.12 0.23 0.97 16 29 C -0.08 0.17 8.52 22.26 0.19 0.36 16 30 C -0.21 -0.02 9.04 22.37 0.20 0.19 16 31 H 0.07 -0.36 7.66 -2.39 -0.02 -0.37 16 32 H 0.06 -0.31 7.66 -2.39 -0.02 -0.33 16 33 H 0.11 -0.68 8.14 -2.39 -0.02 -0.70 16 34 H 0.13 0.37 8.06 -2.91 -0.02 0.35 16 35 H 0.14 -0.37 8.05 -2.91 -0.02 -0.40 16 36 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 37 H 0.10 -0.50 6.41 -2.39 -0.02 -0.52 16 38 H 0.42 -5.33 8.73 -92.71 -0.81 -6.14 16 39 H 0.13 -1.08 7.67 -2.39 -0.02 -1.10 16 40 H 0.13 -1.24 7.66 -2.39 -0.02 -1.26 16 41 H 0.07 -0.01 7.68 -2.39 -0.02 -0.03 16 42 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 43 H 0.06 0.09 7.65 -2.39 -0.02 0.07 16 44 H 0.14 0.46 6.30 -2.91 -0.02 0.44 16 45 H 0.09 -0.44 7.96 -2.39 -0.02 -0.46 16 46 H 0.39 -2.45 8.74 -74.06 -0.65 -3.10 16 47 H -0.29 -0.17 7.11 99.48 0.71 0.53 16 48 H -0.29 -0.65 7.05 99.48 0.70 0.05 16 49 H 0.16 -0.89 4.85 -2.91 -0.01 -0.90 16 50 H 0.18 -1.69 6.30 -2.91 -0.02 -1.71 16 51 H 0.11 -0.99 7.59 -2.39 -0.02 -1.01 16 52 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 53 H 0.15 -1.11 6.72 -2.91 -0.02 -1.13 16 54 H 0.14 -0.58 6.30 -2.91 -0.02 -0.60 16 Total: 0.00 -34.07 441.30 0.91 -33.16 By element: Atomic # 1 Polarization: -18.40 SS G_CDS: -0.46 Total: -18.86 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 5.75 Total: 9.29 kcal Atomic # 7 Polarization: 3.05 SS G_CDS: -2.35 Total: 0.70 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -4.07 Total: -23.30 kcal Atomic # 14 Polarization: -3.03 SS G_CDS: 2.05 Total: -0.98 kcal Total: -34.07 0.91 -33.16 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100430_60476.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.639 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds