Wall clock time and date at job start Sun Mar 7 2021 05:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50699 * 109.47152 * 119.99802 * 2 1 3 5 5 C 1.35451 * 126.06378 * 244.69077 * 4 2 1 6 6 N 1.35535 * 108.86948 * 179.89470 * 5 4 2 7 7 C 1.37650 * 108.64313 * 0.37461 * 6 5 4 8 8 C 1.46681 * 126.23345 * 179.79411 * 7 6 5 9 9 O 1.21691 * 119.99838 * 179.97438 * 8 7 6 10 10 N 1.34777 * 119.99834 * 359.97438 * 8 7 6 11 11 C 1.46499 * 120.00106 * 180.02562 * 10 8 7 12 12 H 1.09009 * 109.46898 * 325.00063 * 11 10 8 13 13 C 1.52999 * 109.47258 * 84.99486 * 11 10 8 14 14 C 1.52998 * 109.47376 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47297 * 300.00550 * 14 13 11 16 16 H 1.09001 * 109.47363 * 299.99978 * 15 14 13 17 17 O 1.42893 * 109.47400 * 179.97438 * 15 14 13 18 18 C 1.42898 * 114.00091 * 89.99832 * 17 15 14 19 19 F 1.39901 * 109.47086 * 299.99878 * 18 17 15 20 20 F 1.39898 * 109.47291 * 60.00241 * 18 17 15 21 21 C 1.52999 * 109.47357 * 59.99438 * 15 14 13 22 22 C 1.52998 * 109.47376 * 300.00514 * 21 15 14 23 23 C 1.37869 * 107.53310 * 359.76951 * 7 6 5 24 24 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 25 25 H 1.08997 * 109.47332 * 240.00042 * 2 1 3 26 26 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 27 27 H 1.48492 * 109.99800 * 181.32238 * 3 2 1 28 28 H 1.08005 * 125.56749 * 0.04217 * 5 4 2 29 29 H 0.97007 * 125.67574 * 180.12927 * 6 5 4 30 30 H 0.97004 * 119.99967 * 359.97438 * 10 8 7 31 31 H 1.08999 * 109.47412 * 300.00540 * 13 11 10 32 32 H 1.09009 * 109.46695 * 60.00452 * 13 11 10 33 33 H 1.09002 * 109.47220 * 180.02562 * 14 13 11 34 34 H 1.08996 * 109.46702 * 60.00386 * 14 13 11 35 35 H 1.09011 * 109.47357 * 180.02562 * 18 17 15 36 36 H 1.08999 * 109.47412 * 180.02562 * 21 15 14 37 37 H 1.09009 * 109.46695 * 60.00159 * 21 15 14 38 38 H 1.08996 * 109.46702 * 299.99614 * 22 21 15 39 39 H 1.09002 * 109.47220 * 179.97438 * 22 21 15 40 40 H 1.08005 * 126.45701 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 2.6385 -0.1510 2.2413 6 7 2.9066 -1.1030 3.1680 7 6 2.3695 -2.2963 2.7410 8 6 2.4376 -3.5799 3.4476 9 8 1.9199 -4.5691 2.9636 10 7 3.0737 -3.6637 4.6329 11 6 3.1422 -4.9458 5.3384 12 1 2.2197 -5.5020 5.1716 13 6 4.3283 -5.7555 4.8107 14 6 4.3995 -7.0948 5.5471 15 6 4.5794 -6.8439 7.0456 16 1 5.5020 -6.2879 7.2128 17 8 4.6454 -8.0947 7.7334 18 6 5.9685 -8.6193 7.8601 19 9 6.5150 -8.8186 6.5878 20 9 6.7628 -7.7143 8.5723 21 6 3.3934 -6.0342 7.5732 22 6 3.3221 -4.6950 6.8369 23 6 1.7555 -2.0652 1.5284 24 1 -0.3934 0.4416 -0.7651 25 1 1.7924 -0.5138 -0.8899 26 1 1.5613 2.4680 1.2084 27 1 3.5344 1.7705 -0.0322 28 1 2.9376 0.8851 2.3005 29 1 3.3984 -0.9669 3.9930 30 1 3.4867 -2.8752 5.0185 31 1 4.1999 -5.9346 3.7433 32 1 5.2508 -5.1993 4.9775 33 1 5.2448 -7.6714 5.1715 34 1 3.4770 -7.6507 5.3799 35 1 5.9332 -9.5697 8.3929 36 1 3.5218 -5.8551 8.6407 37 1 2.4708 -6.5903 7.4061 38 1 4.2446 -4.1390 7.0040 39 1 2.4769 -4.1183 7.2125 40 1 1.2361 -2.7933 0.9229 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100670_10543058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:45:04 Heat of formation + Delta-G solvation = -186.199481 kcal Electronic energy + Delta-G solvation = -26552.398918 eV Core-core repulsion = 22197.342358 eV Total energy + Delta-G solvation = -4355.056560 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.127 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.10585 -48.21969 -42.62939 -41.00783 -39.77891 -37.78116 -37.58292 -35.05127 -32.82337 -32.01548 -31.21486 -29.82557 -26.73458 -26.21468 -24.58150 -23.95818 -22.87547 -21.60209 -21.26447 -20.64257 -19.84011 -19.34909 -18.78910 -18.68166 -18.27442 -17.53078 -17.31388 -16.52463 -16.34090 -15.78515 -15.64040 -15.36497 -15.21141 -15.11682 -15.00418 -14.76584 -14.68368 -14.52721 -14.35086 -14.27253 -14.10679 -13.76908 -13.49357 -13.44389 -13.32859 -12.90250 -12.52503 -12.47349 -12.30713 -12.06631 -11.94525 -11.61224 -11.42178 -11.14219 -10.36455 -10.29914 -9.99086 -9.45266 -4.86979 0.20592 1.30575 1.42933 1.75521 1.77296 1.92029 2.02266 2.06032 2.14105 2.69589 3.41325 3.46799 3.58635 3.66044 3.69057 3.77477 3.86933 3.89655 3.93345 3.98864 4.03981 4.07762 4.20236 4.22402 4.30628 4.42555 4.60266 4.61913 4.74453 4.78144 4.86607 4.90924 4.97870 4.99458 5.04545 5.13108 5.28213 5.43990 5.55930 5.59148 6.19451 6.37429 6.94738 7.01174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.571 6.571 2 C -0.058 4.058 3 Si 0.787 3.213 4 C -0.189 4.189 5 C 0.034 3.966 6 N -0.514 5.514 7 C -0.063 4.063 8 C 0.591 3.409 9 O -0.568 6.568 10 N -0.710 5.710 11 C 0.145 3.855 12 H 0.073 0.927 13 C -0.121 4.121 14 C -0.137 4.137 15 C 0.076 3.924 16 H 0.078 0.922 17 O -0.388 6.388 18 C 0.398 3.602 19 F -0.220 7.220 20 F -0.219 7.219 21 C -0.108 4.108 22 C -0.114 4.114 23 C -0.103 4.103 24 H 0.399 0.601 25 H 0.077 0.923 26 H -0.288 1.288 27 H -0.283 1.283 28 H 0.189 0.811 29 H 0.437 0.563 30 H 0.411 0.589 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.207 0.793 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.566 5.620 1.859 6.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.381 6.381 2 C -0.167 4.167 3 Si 0.691 3.309 4 C -0.195 4.195 5 C -0.104 4.104 6 N -0.112 5.112 7 C -0.177 4.177 8 C 0.380 3.620 9 O -0.447 6.447 10 N -0.361 5.361 11 C 0.040 3.960 12 H 0.091 0.909 13 C -0.159 4.159 14 C -0.176 4.176 15 C 0.019 3.981 16 H 0.096 0.904 17 O -0.310 6.310 18 C 0.307 3.693 19 F -0.202 7.202 20 F -0.201 7.201 21 C -0.146 4.146 22 C -0.152 4.152 23 C -0.129 4.129 24 H 0.250 0.750 25 H 0.095 0.905 26 H -0.215 1.215 27 H -0.209 1.209 28 H 0.206 0.794 29 H 0.278 0.722 30 H 0.248 0.752 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.223 0.777 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.722 5.076 2.737 6.377 hybrid contribution 0.676 -0.338 0.282 0.807 sum 3.399 4.738 3.019 6.566 Atomic orbital electron populations 1.86463 1.18126 1.82498 1.50986 1.24402 0.85112 1.11459 0.95741 0.93807 0.77417 0.74236 0.85454 1.19233 1.07016 0.94097 0.99177 1.22023 1.03053 0.95130 0.90186 1.41775 1.43141 1.06541 1.19741 1.20251 1.11289 0.86653 0.99464 1.17140 0.77774 0.86197 0.80914 1.90852 1.48524 1.37651 1.67674 1.45759 1.56600 1.13139 1.20616 1.21078 0.98937 0.83702 0.92245 0.90860 1.21798 0.98843 0.95648 0.99640 1.22058 1.03339 0.97723 0.94453 1.22446 1.00784 0.83648 0.91198 0.90440 1.88440 1.26485 1.39274 1.76804 1.23858 0.75582 0.92681 0.77212 1.93042 1.86855 1.95429 1.44843 1.93041 1.76084 1.72341 1.78608 1.21510 0.97262 0.94717 1.01097 1.21731 1.04719 0.97487 0.91248 1.21286 1.00215 0.96316 0.95133 0.74995 0.90463 1.21485 1.20937 0.79383 0.72159 0.75206 0.92829 0.90289 0.91036 0.91332 0.77713 0.89158 0.90787 0.89054 0.88967 0.84751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -1.41 12.86 -148.98 -1.92 -3.33 16 2 C -0.06 -0.05 3.01 71.24 0.21 0.16 16 3 Si 0.79 -3.22 30.60 68.60 2.10 -1.12 16 4 C -0.19 -1.07 5.46 -20.12 -0.11 -1.18 16 5 C 0.03 0.03 10.45 83.48 0.87 0.90 16 6 N -0.51 0.85 5.99 -183.62 -1.10 -0.25 16 7 C -0.06 -0.37 7.06 40.35 0.28 -0.09 16 8 C 0.59 4.43 7.75 86.45 0.67 5.11 16 9 O -0.57 -9.44 16.54 -4.32 -0.07 -9.51 16 10 N -0.71 0.72 5.07 -446.49 -2.27 -1.54 16 11 C 0.14 -0.04 2.45 44.99 0.11 0.07 16 12 H 0.07 0.36 7.58 -2.38 -0.02 0.35 16 13 C -0.12 -0.14 5.49 30.59 0.17 0.03 16 14 C -0.14 -0.23 5.39 30.59 0.17 -0.06 16 15 C 0.08 -0.04 2.40 30.59 0.07 0.04 16 16 H 0.08 -0.08 7.20 -2.39 -0.02 -0.10 16 17 O -0.39 -0.35 10.29 -148.98 -1.53 -1.89 16 18 C 0.40 -0.74 6.26 113.37 0.71 -0.03 16 19 F -0.22 -0.53 15.46 44.97 0.70 0.16 16 20 F -0.22 -0.31 16.63 44.97 0.75 0.44 16 21 C -0.11 0.37 5.57 30.59 0.17 0.54 16 22 C -0.11 0.68 5.39 30.59 0.16 0.84 16 23 C -0.10 -0.99 10.59 22.57 0.24 -0.75 16 24 H 0.40 -3.35 8.74 -74.06 -0.65 -4.00 16 25 H 0.08 -0.09 7.96 -2.39 -0.02 -0.11 16 26 H -0.29 -0.46 7.11 99.48 0.71 0.25 16 27 H -0.28 -0.04 7.11 99.48 0.71 0.67 16 28 H 0.19 -0.73 6.21 -2.91 -0.02 -0.75 16 29 H 0.44 -4.40 8.19 -92.70 -0.76 -5.16 16 30 H 0.41 -3.44 7.73 -92.71 -0.72 -4.16 16 31 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.08 -0.12 8.14 -2.38 -0.02 -0.14 16 33 H 0.07 0.24 6.50 -2.39 -0.02 0.22 16 34 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.21 -2.10 8.14 -2.38 -0.02 -2.12 16 36 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 37 H 0.07 -0.13 8.14 -2.38 -0.02 -0.15 16 38 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 39 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 40 H 0.13 1.62 8.06 -2.91 -0.02 1.60 16 Total: 0.00 -25.94 338.26 -0.59 -26.52 By element: Atomic # 1 Polarization: -14.10 SS G_CDS: -0.98 Total: -15.08 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 3.73 Total: 5.59 kcal Atomic # 7 Polarization: 1.57 SS G_CDS: -3.37 Total: -1.79 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -3.52 Total: -14.72 kcal Atomic # 9 Polarization: -0.84 SS G_CDS: 1.44 Total: 0.60 kcal Atomic # 14 Polarization: -3.22 SS G_CDS: 2.10 Total: -1.12 kcal Total: -25.94 -0.59 -26.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100670_10543058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.678 kcal (2) G-P(sol) polarization free energy of solvation -25.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds