Wall clock time and date at job start Sun Mar 7 2021 05:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86299 * 109.47234 * 2 1 4 4 C 1.50700 * 109.46881 * 120.00199 * 2 1 3 5 5 C 1.38331 * 119.87556 * 65.00196 * 4 2 1 6 6 C 1.38000 * 120.12784 * 179.97438 * 5 4 2 7 7 C 1.39400 * 119.87274 * 359.97438 * 6 5 4 8 8 C 1.48277 * 120.12827 * 179.97438 * 7 6 5 9 9 C 1.39503 * 119.97660 * 180.02562 * 8 7 6 10 10 C 1.37669 * 120.02526 * 180.02562 * 9 8 7 11 11 C 1.39706 * 119.97311 * 359.97438 * 10 9 8 12 12 C 1.47717 * 120.02316 * 179.97438 * 11 10 9 13 13 O 1.21574 * 120.00172 * 359.97438 * 12 11 10 14 14 N 1.34784 * 120.00134 * 180.02562 * 12 11 10 15 15 C 1.46493 * 119.99864 * 179.72605 * 14 12 11 16 16 H 1.08999 * 109.47597 * 34.99540 * 15 14 12 17 17 C 1.52996 * 109.47222 * 155.00033 * 15 14 12 18 18 C 1.52999 * 109.47703 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.47031 * 300.00331 * 18 17 15 20 20 H 1.08993 * 109.46921 * 299.99232 * 19 18 17 21 21 O 1.42898 * 109.47117 * 179.97438 * 19 18 17 22 22 C 1.42901 * 114.00417 * 149.99741 * 21 19 18 23 23 F 1.39903 * 109.46615 * 300.00319 * 22 21 19 24 24 F 1.39897 * 109.46812 * 59.99533 * 22 21 19 25 25 C 1.52997 * 109.47264 * 59.99703 * 19 18 17 26 26 C 1.53000 * 109.47099 * 274.99655 * 15 14 12 27 27 C 1.39710 * 119.95450 * 0.25372 * 11 10 9 28 28 C 1.37671 * 119.97191 * 359.47269 * 27 11 10 29 29 C 1.39407 * 119.74756 * 0.27551 * 7 6 5 30 30 C 1.38005 * 119.86454 * 359.42442 * 29 7 6 31 31 H 0.96690 * 113.99946 * 299.99766 * 1 2 3 32 32 H 1.09000 * 109.47529 * 240.00009 * 2 1 3 33 33 H 1.48495 * 110.00143 * 178.67692 * 3 2 1 34 34 H 1.48500 * 110.00029 * 300.00069 * 3 2 1 35 35 H 1.07997 * 119.93191 * 359.97438 * 5 4 2 36 36 H 1.07997 * 120.06096 * 180.02562 * 6 5 4 37 37 H 1.08002 * 119.98986 * 0.02562 * 9 8 7 38 38 H 1.08001 * 120.01145 * 179.97438 * 10 9 8 39 39 H 0.97000 * 119.99339 * 359.97438 * 14 12 11 40 40 H 1.09003 * 109.47300 * 299.99847 * 17 15 14 41 41 H 1.08999 * 109.47237 * 59.99286 * 17 15 14 42 42 H 1.09010 * 109.46539 * 59.99757 * 18 17 15 43 43 H 1.08994 * 109.47830 * 179.97438 * 18 17 15 44 44 H 1.08994 * 109.47568 * 180.02562 * 22 21 19 45 45 H 1.08993 * 109.47536 * 59.99905 * 25 19 18 46 46 H 1.09000 * 109.46884 * 180.02562 * 25 19 18 47 47 H 1.09005 * 109.47224 * 300.00512 * 26 15 14 48 48 H 1.09008 * 109.47230 * 60.00254 * 26 15 14 49 49 H 1.07999 * 120.01466 * 179.72204 * 27 11 10 50 50 H 1.08000 * 119.98629 * 180.27315 * 28 27 11 51 51 H 1.07991 * 120.06426 * 179.72692 * 29 7 6 52 52 H 1.07997 * 119.92985 * 180.27592 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.6830 -2.0612 1.3958 6 6 2.1410 -2.7171 2.5203 7 6 2.8555 -2.0159 3.4903 8 6 3.3497 -2.7149 4.7010 9 6 4.0640 -2.0100 5.6701 10 6 4.5238 -2.6581 6.7943 11 6 4.2744 -4.0221 6.9647 12 6 4.7677 -4.7187 8.1703 13 8 5.3914 -4.1051 9.0144 14 7 4.5273 -6.0348 8.3340 15 6 5.0217 -6.7268 9.5267 16 1 4.9799 -6.0523 10.3818 17 6 4.1507 -7.9541 9.8021 18 6 4.6674 -8.6774 11.0474 19 6 6.1137 -9.1199 10.8168 20 1 6.1553 -9.7943 9.9616 21 8 6.5965 -9.7949 11.9802 22 6 7.5791 -10.7955 11.7058 23 9 7.0315 -11.7677 10.8618 24 9 8.6839 -10.2056 11.0824 25 6 6.9848 -7.8926 10.5415 26 6 6.4682 -7.1694 9.2967 27 6 3.5631 -4.7281 5.9913 28 6 3.0994 -4.0768 4.8706 29 6 3.0982 -0.6536 3.3209 30 6 2.6406 -0.0097 2.1893 31 1 -0.3933 0.4416 0.7650 32 1 1.7924 -0.5138 -0.8900 33 1 3.5346 1.7703 0.0322 34 1 1.5615 2.4679 -1.2085 35 1 1.1297 -2.6035 0.6433 36 1 1.9469 -3.7718 2.6480 37 1 4.2563 -0.9554 5.5384 38 1 5.0771 -2.1122 7.5442 39 1 4.0300 -6.5243 7.6603 40 1 3.1202 -7.6389 9.9660 41 1 4.1926 -8.6287 8.9469 42 1 4.6257 -8.0028 11.9027 43 1 4.0466 -9.5514 11.2439 44 1 7.8941 -11.2612 12.6396 45 1 6.9432 -7.2182 11.3968 46 1 8.0151 -8.2079 10.3769 47 1 6.5101 -7.8440 8.4415 48 1 7.0889 -6.2950 9.1005 49 1 3.3736 -5.7835 6.1199 50 1 2.5457 -4.6214 4.1201 51 1 3.6473 -0.1045 4.0713 52 1 2.8319 1.0447 2.0549 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100670_13158362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:46:44 Heat of formation + Delta-G solvation = -174.839796 kcal Electronic energy + Delta-G solvation = -36413.598941 eV Core-core repulsion = 31172.254945 eV Total energy + Delta-G solvation = -5241.343996 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.163 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -50.08032 -48.19399 -41.59716 -40.86898 -40.08503 -39.19357 -37.74733 -37.47484 -35.03335 -33.94468 -32.59278 -31.96202 -31.60736 -31.12083 -29.70912 -27.04628 -26.30240 -24.66063 -24.61305 -23.93102 -23.22739 -22.58248 -22.11799 -21.46639 -21.09848 -19.50287 -19.18444 -18.75730 -18.65513 -18.39338 -17.75934 -17.51882 -16.87783 -16.52406 -16.33703 -16.17681 -16.01466 -15.82764 -15.66410 -15.40755 -15.23344 -15.07705 -15.04106 -14.93741 -14.85421 -14.61744 -14.46533 -14.34524 -14.21275 -14.20400 -14.05124 -13.72830 -13.59636 -13.42692 -13.27239 -13.20154 -12.83113 -12.74055 -12.54017 -12.44400 -12.25134 -12.11368 -12.02046 -11.93029 -11.60324 -11.55405 -11.16909 -11.03902 -10.76779 -10.41808 -10.17790 -10.06435 -9.95802 -9.07703 -5.01589 -0.69295 0.34853 0.40355 0.49956 1.30181 1.62045 1.78139 1.91418 1.95406 2.10440 2.60577 2.72352 3.01061 3.39435 3.47288 3.51577 3.54132 3.63009 3.66670 3.71285 3.77784 3.81875 3.87496 3.94449 3.98225 4.01424 4.03646 4.06310 4.13950 4.26591 4.27500 4.29154 4.36216 4.37112 4.47437 4.50422 4.64828 4.66130 4.68505 4.80754 4.89134 4.91613 4.96202 5.02931 5.04560 5.08540 5.10637 5.14664 5.19196 5.20720 5.26973 5.41367 5.41509 5.49962 5.59607 5.65285 5.79626 5.93109 6.44094 6.75598 7.11604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.073 4.073 3 Si 0.771 3.229 4 C -0.119 4.119 5 C -0.103 4.103 6 C -0.108 4.108 7 C -0.060 4.060 8 C -0.023 4.023 9 C -0.122 4.122 10 C -0.071 4.071 11 C -0.152 4.152 12 C 0.557 3.443 13 O -0.580 6.580 14 N -0.708 5.708 15 C 0.144 3.856 16 H 0.071 0.929 17 C -0.114 4.114 18 C -0.108 4.108 19 C 0.075 3.925 20 H 0.077 0.923 21 O -0.389 6.389 22 C 0.398 3.602 23 F -0.219 7.219 24 F -0.220 7.220 25 C -0.137 4.137 26 C -0.121 4.121 27 C -0.074 4.074 28 C -0.121 4.121 29 C -0.107 4.107 30 C -0.118 4.118 31 H 0.395 0.605 32 H 0.107 0.893 33 H -0.287 1.287 34 H -0.301 1.301 35 H 0.131 0.869 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.127 0.873 39 H 0.415 0.585 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.206 0.794 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.052 0.948 49 H 0.158 0.842 50 H 0.156 0.844 51 H 0.147 0.853 52 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.918 -2.387 0.049 4.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.183 4.183 3 Si 0.678 3.322 4 C -0.120 4.120 5 C -0.121 4.121 6 C -0.125 4.125 7 C -0.060 4.060 8 C -0.023 4.023 9 C -0.140 4.140 10 C -0.090 4.090 11 C -0.155 4.155 12 C 0.346 3.654 13 O -0.460 6.460 14 N -0.360 5.360 15 C 0.039 3.961 16 H 0.089 0.911 17 C -0.152 4.152 18 C -0.146 4.146 19 C 0.019 3.981 20 H 0.095 0.905 21 O -0.311 6.311 22 C 0.307 3.693 23 F -0.201 7.201 24 F -0.202 7.202 25 C -0.176 4.176 26 C -0.159 4.159 27 C -0.092 4.092 28 C -0.138 4.138 29 C -0.125 4.125 30 C -0.136 4.136 31 H 0.245 0.755 32 H 0.124 0.876 33 H -0.214 1.214 34 H -0.229 1.229 35 H 0.149 0.851 36 H 0.164 0.836 37 H 0.166 0.834 38 H 0.145 0.855 39 H 0.254 0.746 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.108 0.892 44 H 0.222 0.778 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.071 0.929 49 H 0.176 0.824 50 H 0.173 0.827 51 H 0.165 0.835 52 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.983 -1.671 -0.161 3.423 hybrid contribution 0.448 -0.667 -0.807 1.139 sum -2.535 -2.338 -0.968 3.582 Atomic orbital electron populations 1.86472 1.17151 1.82158 1.50520 1.25150 0.85331 1.10596 0.97260 0.93777 0.77884 0.75628 0.84929 1.20530 0.99355 0.95208 0.96890 1.21104 0.99043 0.94003 0.97925 1.21515 0.96888 1.01003 0.93137 1.18941 0.99203 0.93898 0.93981 1.19151 0.96048 0.93949 0.93147 1.21390 0.98235 1.01287 0.93082 1.21265 0.96935 0.93443 0.97347 1.19998 1.04352 0.95207 0.95978 1.18574 0.78655 0.82361 0.85857 1.90778 1.42501 1.67305 1.45457 1.45846 1.57094 1.08548 1.24480 1.21033 0.93281 0.94052 0.87686 0.91053 1.21732 0.99720 0.95108 0.98668 1.21510 0.92696 1.01568 0.98798 1.22456 0.95234 0.93128 0.87280 0.90464 1.88438 1.56882 1.51411 1.34323 1.23843 0.75936 0.78812 0.90718 1.93043 1.86339 1.64434 1.76259 1.93040 1.55898 1.85051 1.86196 1.22048 0.99819 0.97102 0.98582 1.21793 0.96010 1.00012 0.98126 1.21474 0.94668 1.00858 0.92230 1.21473 1.00359 0.93535 0.98472 1.21494 0.99257 0.93699 0.98008 1.21138 0.98369 1.00201 0.93866 0.75473 0.87605 1.21415 1.22924 0.85103 0.83641 0.83369 0.85471 0.74624 0.88861 0.89090 0.90853 0.89220 0.77776 0.91415 0.91164 0.90323 0.92917 0.82419 0.82700 0.83544 0.83658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.33 12.83 -148.98 -1.91 -1.58 16 2 C -0.07 0.10 2.80 71.24 0.20 0.30 16 3 Si 0.77 -2.00 29.79 68.60 2.04 0.04 16 4 C -0.12 0.15 5.36 -19.82 -0.11 0.04 16 5 C -0.10 0.09 9.67 22.24 0.21 0.31 16 6 C -0.11 0.22 9.43 22.49 0.21 0.43 16 7 C -0.06 0.06 5.88 -20.05 -0.12 -0.05 16 8 C -0.02 0.02 5.88 -20.00 -0.12 -0.10 16 9 C -0.12 0.00 9.41 22.44 0.21 0.21 16 10 C -0.07 -0.23 9.58 22.49 0.22 -0.02 16 11 C -0.15 -0.34 5.88 -20.06 -0.12 -0.45 16 12 C 0.56 3.03 7.73 86.75 0.67 3.70 16 13 O -0.58 -8.27 15.99 -3.95 -0.06 -8.33 16 14 N -0.71 1.18 5.03 -445.53 -2.24 -1.06 16 15 C 0.14 -0.11 2.46 44.99 0.11 0.01 16 16 H 0.07 0.32 7.57 -2.39 -0.02 0.30 16 17 C -0.11 0.71 5.39 30.59 0.16 0.87 16 18 C -0.11 0.39 5.57 30.59 0.17 0.56 16 19 C 0.08 -0.04 2.40 30.59 0.07 0.03 16 20 H 0.08 -0.08 7.20 -2.39 -0.02 -0.10 16 21 O -0.39 -0.31 10.29 -148.98 -1.53 -1.85 16 22 C 0.40 -0.77 6.26 113.37 0.71 -0.06 16 23 F -0.22 -0.29 16.63 44.97 0.75 0.45 16 24 F -0.22 -0.52 15.46 44.97 0.70 0.18 16 25 C -0.14 -0.20 5.39 30.58 0.16 -0.04 16 26 C -0.12 -0.11 5.49 30.58 0.17 0.06 16 27 C -0.07 0.28 9.52 22.49 0.21 0.49 16 28 C -0.12 0.44 9.41 22.44 0.21 0.65 16 29 C -0.11 0.25 9.43 22.50 0.21 0.46 16 30 C -0.12 0.33 8.65 22.24 0.19 0.52 16 31 H 0.40 -3.38 8.70 -74.06 -0.64 -4.02 16 32 H 0.11 -0.01 7.96 -2.39 -0.02 -0.03 16 33 H -0.29 -0.68 7.11 99.48 0.71 0.03 16 34 H -0.30 -1.58 7.11 99.48 0.71 -0.88 16 35 H 0.13 -0.24 8.06 -2.91 -0.02 -0.27 16 36 H 0.15 -0.93 6.19 -2.91 -0.02 -0.95 16 37 H 0.15 -0.60 6.19 -2.91 -0.02 -0.61 16 38 H 0.13 0.64 7.64 -2.91 -0.02 0.62 16 39 H 0.42 -3.50 6.62 -92.71 -0.61 -4.11 16 40 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 41 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 42 H 0.07 -0.15 8.14 -2.38 -0.02 -0.17 16 43 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 44 H 0.21 -2.11 8.14 -2.39 -0.02 -2.13 16 45 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.07 0.23 6.50 -2.39 -0.02 0.21 16 47 H 0.08 -0.12 8.14 -2.38 -0.02 -0.14 16 48 H 0.05 0.31 8.14 -2.38 -0.02 0.29 16 49 H 0.16 -1.70 6.39 -2.91 -0.02 -1.72 16 50 H 0.16 -1.32 6.19 -2.91 -0.02 -1.34 16 51 H 0.15 -0.89 6.19 -2.92 -0.02 -0.91 16 52 H 0.15 -1.00 4.89 -2.91 -0.01 -1.02 16 Total: 0.00 -24.19 423.24 1.18 -23.02 By element: Atomic # 1 Polarization: -18.57 SS G_CDS: -0.22 Total: -18.79 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 3.66 Total: 7.93 kcal Atomic # 7 Polarization: 1.18 SS G_CDS: -2.24 Total: -1.06 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -3.51 Total: -11.76 kcal Atomic # 9 Polarization: -0.81 SS G_CDS: 1.44 Total: 0.63 kcal Atomic # 14 Polarization: -2.00 SS G_CDS: 2.04 Total: 0.04 kcal Total: -24.19 1.18 -23.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100670_13158362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.823 kcal (2) G-P(sol) polarization free energy of solvation -24.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds