Wall clock time and date at job start Sun Mar 7 2021 05:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86297 * 109.47522 * 2 1 4 4 C 1.50710 * 109.46712 * 240.00494 * 2 1 3 5 5 C 1.34848 * 125.89846 * 150.02726 * 4 2 1 6 6 C 1.40939 * 107.47099 * 179.97438 * 5 4 2 7 7 C 1.34856 * 107.46256 * 359.75504 * 6 5 4 8 8 N 1.36565 * 125.90074 * 330.00042 * 4 2 1 9 9 C 1.40198 * 125.66781 * 359.97438 * 8 4 2 10 10 C 1.38828 * 120.06334 * 129.99975 * 9 8 4 11 11 C 1.38128 * 119.93443 * 180.02562 * 10 9 8 12 12 C 1.38277 * 120.06193 * 359.97438 * 11 10 9 13 13 C 1.50704 * 119.93178 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.47159 * 89.99768 * 13 12 11 15 15 O 1.21281 * 119.99912 * 0.02562 * 14 13 12 16 16 N 1.34767 * 119.99889 * 179.97438 * 14 13 12 17 17 C 1.46506 * 120.00003 * 180.02562 * 16 14 13 18 18 H 1.09004 * 109.47073 * 325.00393 * 17 16 14 19 19 C 1.53002 * 109.47035 * 85.00075 * 17 16 14 20 20 C 1.52996 * 109.46969 * 180.02562 * 19 17 16 21 21 C 1.52997 * 109.47131 * 299.99938 * 20 19 17 22 22 H 1.09004 * 109.47261 * 300.00306 * 21 20 19 23 23 O 1.42905 * 109.47264 * 180.02562 * 21 20 19 24 24 C 1.42903 * 113.99741 * 90.00040 * 23 21 20 25 25 F 1.39902 * 109.47269 * 299.99819 * 24 23 21 26 26 F 1.39896 * 109.47095 * 60.00476 * 24 23 21 27 27 C 1.53002 * 109.47143 * 60.00169 * 21 20 19 28 28 C 1.52996 * 109.46969 * 299.99930 * 27 21 20 29 29 C 1.38275 * 120.13457 * 0.27783 * 12 11 10 30 30 C 1.38119 * 120.06573 * 359.48886 * 29 12 11 31 31 H 0.96702 * 114.00322 * 59.99070 * 1 2 3 32 32 H 1.09000 * 109.47217 * 120.00814 * 2 1 3 33 33 H 1.48502 * 110.00525 * 298.68701 * 3 2 1 34 34 H 1.48504 * 109.99611 * 60.00195 * 3 2 1 35 35 H 1.08006 * 126.26819 * 359.93962 * 5 4 2 36 36 H 1.07995 * 126.26846 * 180.02562 * 6 5 4 37 37 H 1.08001 * 125.89520 * 180.23115 * 7 6 5 38 38 H 1.08000 * 120.03569 * 0.04612 * 10 9 8 39 39 H 1.07993 * 119.96734 * 180.02562 * 11 10 9 40 40 H 1.09001 * 109.47029 * 330.00162 * 13 12 11 41 41 H 1.08994 * 109.47142 * 210.00136 * 13 12 11 42 42 H 0.96996 * 120.00319 * 0.02562 * 16 14 13 43 43 H 1.09004 * 109.47059 * 300.00628 * 19 17 16 44 44 H 1.09004 * 109.46930 * 60.00230 * 19 17 16 45 45 H 1.09001 * 109.46997 * 180.02562 * 20 19 17 46 46 H 1.08992 * 109.47534 * 60.00418 * 20 19 17 47 47 H 1.09001 * 109.46593 * 180.02562 * 24 23 21 48 48 H 1.09004 * 109.46930 * 59.99935 * 27 21 20 49 49 H 1.09004 * 109.47059 * 179.97438 * 27 21 20 50 50 H 1.09001 * 109.46997 * 179.97438 * 28 27 21 51 51 H 1.08996 * 109.47452 * 300.00062 * 28 27 21 52 52 H 1.07996 * 119.96888 * 179.74605 * 29 12 11 53 53 H 1.07996 * 120.03700 * 180.25630 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 -1.2306 5 6 3.0869 -0.4528 -1.8760 6 6 3.1689 -1.3405 -2.9676 7 6 2.0628 -2.1117 -2.9460 8 7 1.2948 -1.7265 -1.8845 9 6 0.0613 -2.2857 -1.5223 10 6 -0.9401 -2.4357 -2.4721 11 6 -2.1546 -2.9865 -2.1121 12 6 -2.3732 -3.3889 -0.8074 13 6 -3.6995 -3.9890 -0.4178 14 6 -3.6490 -5.4836 -0.6047 15 8 -2.6356 -6.0097 -1.0135 16 7 -4.7296 -6.2356 -0.3165 17 6 -4.6803 -7.6886 -0.4977 18 1 -4.0635 -7.9260 -1.3645 19 6 -4.0780 -8.3379 0.7499 20 6 -4.0259 -9.8552 0.5605 21 6 -5.4422 -10.3906 0.3402 22 1 -6.0592 -10.1535 1.2070 23 8 -5.3937 -11.8079 0.1638 24 6 -5.5119 -12.5492 1.3798 25 9 -4.4641 -12.2042 2.2401 26 9 -6.7345 -12.2509 1.9908 27 6 -6.0445 -9.7412 -0.9074 28 6 -6.0965 -8.2239 -0.7180 29 6 -1.3795 -3.2361 0.1420 30 6 -0.1614 -2.6903 -0.2130 31 1 -0.3934 0.4418 -0.7650 32 1 1.7923 -0.5140 0.8899 33 1 1.5879 2.4587 -1.2241 34 1 1.5616 2.4678 1.2086 35 1 3.8159 0.2970 -1.6061 36 1 3.9726 -1.3961 -3.6868 37 1 1.8243 -2.8964 -3.6486 38 1 -0.7696 -2.1222 -3.4914 39 1 -2.9338 -3.1038 -2.8506 40 1 -4.4861 -3.5708 -1.0459 41 1 -3.9088 -3.7604 0.6272 42 1 -5.5400 -5.8150 0.0108 43 1 -3.0689 -7.9568 0.9067 44 1 -4.6947 -8.1006 1.6168 45 1 -3.5972 -10.3179 1.4495 46 1 -3.4090 -10.0923 -0.3062 47 1 -5.4655 -13.6160 1.1608 48 1 -5.4275 -9.9783 -1.7742 49 1 -7.0533 -10.1230 -1.0646 50 1 -6.5252 -7.7613 -1.6070 51 1 -6.7134 -7.9869 0.1488 52 1 -1.5546 -3.5475 1.1611 53 1 0.6158 -2.5750 0.5279 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100670_13287746.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:47:18 Heat of formation + Delta-G solvation = -144.036271 kcal Electronic energy + Delta-G solvation = -38315.570449 eV Core-core repulsion = 32982.824804 eV Total energy + Delta-G solvation = -5332.745645 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 407.174 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -50.10017 -48.21406 -42.71922 -41.32624 -40.24822 -39.49663 -37.87207 -37.71107 -34.89473 -34.76319 -32.18191 -31.98369 -31.94339 -31.05614 -30.02289 -27.70516 -26.29757 -26.07819 -24.03924 -24.00285 -23.75148 -22.85121 -21.54207 -21.37968 -21.13210 -20.65380 -19.40822 -19.33515 -18.84303 -18.67521 -18.04839 -17.73641 -17.44688 -17.00992 -16.57315 -16.42174 -16.08722 -15.95310 -15.84167 -15.67309 -15.31108 -15.26943 -15.12852 -14.96010 -14.70362 -14.63872 -14.53144 -14.45187 -14.32455 -14.28377 -14.15766 -13.96002 -13.73927 -13.46786 -13.30680 -13.29458 -13.18314 -13.05972 -12.77881 -12.65300 -12.42375 -12.40260 -12.25969 -12.12315 -12.00790 -11.94886 -11.56093 -11.13660 -11.00322 -10.91310 -10.31406 -10.10430 -9.99916 -9.17211 -9.05172 -4.90805 -0.03210 0.33196 1.05479 1.39728 1.62253 1.65190 1.82360 1.93841 1.98614 2.10673 2.17231 2.68763 2.72606 3.22520 3.46664 3.50095 3.60370 3.65521 3.69958 3.73598 3.78728 3.85939 3.89892 3.94073 4.01312 4.06555 4.11881 4.13911 4.20090 4.28069 4.29837 4.35265 4.46662 4.50470 4.52720 4.53654 4.61423 4.64843 4.66321 4.79975 4.82971 4.94109 4.95269 5.01901 5.03673 5.13525 5.17223 5.19313 5.20065 5.26596 5.36117 5.48019 5.48173 5.57789 5.77164 5.92813 6.18141 6.34521 6.47950 6.55052 7.26506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.060 4.060 3 Si 0.803 3.197 4 C -0.028 4.028 5 C -0.192 4.192 6 C -0.199 4.199 7 C -0.025 4.025 8 N -0.398 5.398 9 C 0.111 3.889 10 C -0.128 4.128 11 C -0.098 4.098 12 C -0.067 4.067 13 C -0.098 4.098 14 C 0.514 3.486 15 O -0.579 6.579 16 N -0.715 5.715 17 C 0.145 3.855 18 H 0.066 0.934 19 C -0.120 4.120 20 C -0.138 4.138 21 C 0.076 3.924 22 H 0.077 0.923 23 O -0.390 6.390 24 C 0.398 3.602 25 F -0.220 7.220 26 F -0.218 7.218 27 C -0.109 4.109 28 C -0.114 4.114 29 C -0.100 4.100 30 C -0.095 4.095 31 H 0.378 0.622 32 H 0.123 0.877 33 H -0.295 1.295 34 H -0.293 1.293 35 H 0.172 0.828 36 H 0.157 0.843 37 H 0.170 0.830 38 H 0.131 0.869 39 H 0.145 0.855 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.419 0.581 43 H 0.051 0.949 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.206 0.794 48 H 0.071 0.929 49 H 0.088 0.912 50 H 0.092 0.908 51 H 0.090 0.910 52 H 0.137 0.863 53 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.808 0.655 0.373 4.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.168 4.168 3 Si 0.706 3.294 4 C -0.137 4.137 5 C -0.217 4.217 6 C -0.223 4.223 7 C -0.153 4.153 8 N -0.072 5.072 9 C 0.021 3.979 10 C -0.148 4.148 11 C -0.116 4.116 12 C -0.067 4.067 13 C -0.137 4.137 14 C 0.301 3.699 15 O -0.458 6.458 16 N -0.367 5.367 17 C 0.040 3.960 18 H 0.084 0.916 19 C -0.158 4.158 20 C -0.176 4.176 21 C 0.020 3.980 22 H 0.095 0.905 23 O -0.312 6.312 24 C 0.307 3.693 25 F -0.202 7.202 26 F -0.200 7.200 27 C -0.147 4.147 28 C -0.151 4.151 29 C -0.118 4.118 30 C -0.115 4.115 31 H 0.226 0.774 32 H 0.141 0.859 33 H -0.221 1.221 34 H -0.220 1.220 35 H 0.190 0.810 36 H 0.174 0.826 37 H 0.188 0.812 38 H 0.149 0.851 39 H 0.163 0.837 40 H 0.153 0.847 41 H 0.148 0.852 42 H 0.256 0.744 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.222 0.778 48 H 0.090 0.910 49 H 0.106 0.894 50 H 0.111 0.889 51 H 0.108 0.892 52 H 0.155 0.845 53 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.493 0.598 0.574 4.569 hybrid contribution -0.980 -0.191 -0.125 1.006 sum -5.474 0.407 0.449 5.507 Atomic orbital electron populations 1.86592 1.18106 1.80004 1.49632 1.25059 0.83565 1.11915 0.96239 0.93470 0.89995 0.69835 0.76128 1.21301 0.96753 0.95608 1.00071 1.21066 0.98009 1.04588 0.97989 1.21242 0.99619 0.99529 1.01866 1.22314 0.94076 1.04479 0.94414 1.41572 1.15105 1.27111 1.23381 1.17811 0.85005 1.00354 0.94700 1.21121 0.92740 1.01583 0.99318 1.21071 0.96876 0.97545 0.96127 1.19570 0.95769 0.97881 0.93529 1.20763 0.96219 0.89863 1.06838 1.20996 0.82725 0.90049 0.76119 1.90753 1.32858 1.75274 1.46880 1.45941 1.16195 1.07018 1.67562 1.20932 0.97861 0.79640 0.97533 0.91566 1.21788 1.01302 0.94004 0.98741 1.22058 0.96844 0.95941 1.02799 1.22457 0.96660 0.78459 1.00472 0.90490 1.88440 1.92503 1.20406 1.29817 1.23846 0.70608 0.99153 0.75718 1.93041 1.59651 1.94335 1.73161 1.93041 1.46976 1.95260 1.84761 1.21522 1.02361 0.94591 0.96216 1.21718 0.94717 0.94131 1.04573 1.21032 0.92243 0.98280 1.00266 1.20895 0.98214 0.97772 0.94575 0.77403 0.85902 1.22150 1.22022 0.81029 0.82579 0.81223 0.85062 0.83718 0.84737 0.85213 0.74395 0.93001 0.90318 0.91294 0.91681 0.77763 0.91040 0.89363 0.88922 0.89168 0.84550 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -2.20 9.85 -148.98 -1.47 -3.67 16 2 C -0.06 -0.11 2.27 71.24 0.16 0.05 16 3 Si 0.80 -0.42 31.14 68.60 2.14 1.72 16 4 C -0.03 -0.14 6.02 41.05 0.25 0.11 16 5 C -0.19 -0.63 9.43 22.15 0.21 -0.42 16 6 C -0.20 -0.89 10.86 22.15 0.24 -0.65 16 7 C -0.03 -0.16 11.13 83.18 0.93 0.77 16 8 N -0.40 -2.81 2.87 -333.40 -0.96 -3.76 16 9 C 0.11 0.76 4.90 38.09 0.19 0.95 16 10 C -0.13 -0.59 9.67 22.38 0.22 -0.37 16 11 C -0.10 -0.21 9.69 22.25 0.22 0.00 16 12 C -0.07 -0.11 4.38 -19.84 -0.09 -0.19 16 13 C -0.10 0.51 5.83 29.11 0.17 0.68 16 14 C 0.51 0.40 7.79 87.66 0.68 1.08 16 15 O -0.58 -6.64 15.70 -3.03 -0.05 -6.69 16 16 N -0.71 3.43 5.08 -442.52 -2.25 1.18 16 17 C 0.15 -0.28 2.45 44.99 0.11 -0.17 16 18 H 0.07 0.25 7.58 -2.38 -0.02 0.24 16 19 C -0.12 -0.02 5.49 30.59 0.17 0.15 16 20 C -0.14 -0.21 5.39 30.59 0.17 -0.04 16 21 C 0.08 -0.04 2.40 30.59 0.07 0.04 16 22 H 0.08 -0.07 7.20 -2.38 -0.02 -0.09 16 23 O -0.39 -0.41 10.29 -148.98 -1.53 -1.95 16 24 C 0.40 -0.70 6.26 113.37 0.71 0.01 16 25 F -0.22 -0.55 15.46 44.97 0.70 0.15 16 26 F -0.22 -0.31 16.63 44.97 0.75 0.43 16 27 C -0.11 0.39 5.57 30.59 0.17 0.56 16 28 C -0.11 0.77 5.39 30.59 0.16 0.93 16 29 C -0.10 -0.40 9.69 22.25 0.22 -0.18 16 30 C -0.10 -0.63 7.64 22.38 0.17 -0.46 16 31 H 0.38 0.50 8.70 -74.06 -0.64 -0.14 16 32 H 0.12 0.04 7.96 -2.39 -0.02 0.02 16 33 H -0.29 -1.60 7.11 99.48 0.71 -0.89 16 34 H -0.29 -1.61 7.11 99.48 0.71 -0.90 16 35 H 0.17 -0.49 6.89 -2.91 -0.02 -0.51 16 36 H 0.16 0.10 8.06 -2.91 -0.02 0.08 16 37 H 0.17 0.55 8.06 -2.91 -0.02 0.52 16 38 H 0.13 0.36 8.06 -2.91 -0.02 0.34 16 39 H 0.15 -0.32 8.06 -2.91 -0.02 -0.34 16 40 H 0.13 -1.46 8.08 -2.39 -0.02 -1.48 16 41 H 0.13 -1.27 8.08 -2.39 -0.02 -1.29 16 42 H 0.42 -4.94 8.60 -92.71 -0.80 -5.74 16 43 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 44 H 0.08 -0.18 8.14 -2.38 -0.02 -0.20 16 45 H 0.07 0.24 6.50 -2.39 -0.02 0.22 16 46 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 47 H 0.21 -2.08 8.14 -2.39 -0.02 -2.10 16 48 H 0.07 -0.13 8.14 -2.38 -0.02 -0.15 16 49 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 50 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 51 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 52 H 0.14 0.11 8.06 -2.91 -0.02 0.09 16 53 H 0.12 0.82 7.65 -2.91 -0.02 0.80 16 Total: 0.00 -24.95 436.16 1.99 -22.95 By element: Atomic # 1 Polarization: -12.74 SS G_CDS: -0.45 Total: -13.19 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 5.12 Total: 2.82 kcal Atomic # 7 Polarization: 0.63 SS G_CDS: -3.20 Total: -2.58 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -3.05 Total: -12.31 kcal Atomic # 9 Polarization: -0.86 SS G_CDS: 1.44 Total: 0.58 kcal Atomic # 14 Polarization: -0.42 SS G_CDS: 2.14 Total: 1.72 kcal Total: -24.95 1.99 -22.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100670_13287746.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.082 kcal (2) G-P(sol) polarization free energy of solvation -24.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds