Wall clock time and date at job start Sun Mar 7 2021 05:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37787 * 119.85110 * 2 1 4 4 C 1.39710 * 119.90234 * 180.30135 * 3 2 1 5 5 C 1.47542 * 120.18666 * 179.70072 * 4 3 2 6 6 O 1.21593 * 119.99886 * 179.72282 * 5 4 3 7 7 N 1.34777 * 120.00165 * 359.72420 * 5 4 3 8 8 C 1.46498 * 119.99828 * 180.27934 * 7 5 4 9 9 H 1.08995 * 109.47013 * 324.72129 * 8 7 5 10 10 C 1.52999 * 109.47257 * 84.72116 * 8 7 5 11 11 C 1.53003 * 109.47010 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47127 * 300.00125 * 11 10 8 13 13 H 1.08995 * 109.47275 * 299.99879 * 12 11 10 14 14 O 1.42907 * 109.47171 * 180.02562 * 12 11 10 15 15 C 1.42899 * 114.00150 * 89.99789 * 14 12 11 16 16 F 1.39901 * 109.46900 * 300.00100 * 15 14 12 17 17 F 1.39900 * 109.46888 * 59.99843 * 15 14 12 18 18 C 1.52999 * 109.47278 * 60.00039 * 12 11 10 19 19 C 1.52994 * 109.47024 * 299.99839 * 18 12 11 20 20 C 1.40133 * 119.62040 * 359.42469 * 4 3 2 21 21 O 1.35656 * 120.15108 * 180.30013 * 20 4 3 22 22 C 1.38706 * 119.69756 * 0.27463 * 20 4 3 23 23 C 1.50707 * 119.95799 * 180.02562 * 22 20 4 24 24 O 1.42901 * 109.46770 * 285.00384 * 23 22 20 25 25 Si 1.86295 * 109.47490 * 165.00138 * 23 22 20 26 26 C 1.38055 * 120.08549 * 0.02562 * 22 20 4 27 27 H 1.09004 * 109.47053 * 270.30120 * 1 2 3 28 28 H 1.09002 * 109.46825 * 30.29970 * 1 2 3 29 29 H 1.08992 * 109.47263 * 150.29754 * 1 2 3 30 30 H 1.07998 * 120.04915 * 0.02562 * 3 2 1 31 31 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 32 32 H 1.08996 * 109.47245 * 299.99926 * 10 8 7 33 33 H 1.08995 * 109.47098 * 60.00065 * 10 8 7 34 34 H 1.08996 * 109.47077 * 179.97438 * 11 10 8 35 35 H 1.09003 * 109.47062 * 60.00488 * 11 10 8 36 36 H 1.08996 * 109.46880 * 180.02562 * 15 14 12 37 37 H 1.08996 * 109.47245 * 179.97438 * 18 12 11 38 38 H 1.09003 * 109.46809 * 59.99699 * 18 12 11 39 39 H 1.08994 * 109.47599 * 300.00048 * 19 18 12 40 40 H 1.08998 * 109.47530 * 179.97438 * 19 18 12 41 41 H 0.96705 * 113.99747 * 89.99641 * 21 20 4 42 42 H 1.08995 * 109.47153 * 44.99758 * 23 22 20 43 43 H 0.96706 * 114.00030 * 299.99696 * 24 23 22 44 44 H 1.48500 * 110.00239 * 179.97438 * 25 23 22 45 45 H 1.48501 * 109.99804 * 301.32395 * 25 23 22 46 46 H 1.08005 * 119.80317 * 179.97438 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1951 0.0000 4 6 3.5899 1.1963 -0.0064 5 6 4.3306 2.4723 -0.0131 6 8 5.5466 2.4694 -0.0135 7 7 3.6595 3.6411 -0.0187 8 6 4.3950 4.9080 -0.0315 9 1 5.3057 4.8054 0.5586 10 6 4.7592 5.2717 -1.4723 11 6 5.5268 6.5952 -1.4857 12 6 4.6520 7.6983 -0.8868 13 1 3.7414 7.8005 -1.4770 14 8 5.3687 8.9345 -0.8999 15 6 5.1823 9.7020 -2.0908 16 9 5.6164 8.9614 -3.1955 17 9 3.8257 10.0097 -2.2396 18 6 4.2878 7.3345 0.5540 19 6 3.5202 6.0112 0.5674 20 6 4.2837 -0.0212 -0.0005 21 8 5.6402 -0.0325 -0.0004 22 6 3.5770 -1.2148 0.0058 23 6 4.3171 -2.5276 0.0127 24 8 4.8549 -2.7780 -1.2873 25 14 3.1443 -3.8993 0.4745 26 6 2.1965 -1.2017 0.0057 27 1 -0.3633 0.0054 1.0277 28 1 -0.3633 0.8873 -0.5185 29 1 -0.3633 -0.8926 -0.5092 30 1 1.6512 2.1294 0.0004 31 1 2.6895 3.6433 -0.0187 32 1 5.3821 4.4857 -1.8991 33 1 3.8486 5.3743 -2.0624 34 1 5.7867 6.8541 -2.5121 35 1 6.4376 6.4930 -0.8955 36 1 5.7591 10.6243 -2.0227 37 1 3.6649 8.1206 0.9808 38 1 5.1985 7.2323 1.1442 39 1 2.6096 6.1133 -0.0228 40 1 3.2611 5.7517 1.5939 41 1 6.0335 -0.0315 0.8830 42 1 5.1286 -2.4833 0.7391 43 1 4.1878 -2.8302 -1.9855 44 1 3.8619 -5.1994 0.4843 45 1 2.5539 -3.6343 1.8111 46 1 1.6508 -2.1337 0.0102 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100670_13422088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:47:39 Heat of formation + Delta-G solvation = -249.734996 kcal Electronic energy + Delta-G solvation = -32611.036924 eV Core-core repulsion = 27716.205217 eV Total energy + Delta-G solvation = -4894.831707 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.147 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -50.08670 -48.20034 -41.84851 -40.71430 -39.66224 -38.11509 -37.77810 -37.51305 -34.95366 -33.05218 -32.83959 -31.97706 -29.91419 -27.50127 -26.80327 -26.47491 -25.12965 -23.95661 -23.10393 -21.99968 -21.55528 -21.11438 -19.69467 -19.36843 -18.83287 -18.66216 -18.35890 -18.06504 -17.52641 -16.87343 -16.79133 -16.38424 -16.04658 -16.00272 -15.68947 -15.53655 -15.24683 -15.15105 -14.96647 -14.80069 -14.62830 -14.45429 -14.35109 -14.24944 -14.19503 -13.76503 -13.62270 -13.45113 -13.31341 -13.28411 -12.88070 -12.81316 -12.54597 -12.44548 -12.27155 -12.19717 -12.10233 -12.02398 -11.73805 -11.56855 -11.14123 -10.96927 -10.41128 -10.28797 -10.03006 -9.50508 -5.04741 -0.35507 0.06716 1.24877 1.62239 1.70062 1.88632 1.95550 2.09182 2.55427 2.71499 3.15021 3.39376 3.44781 3.50108 3.53787 3.63868 3.70173 3.78186 3.82573 3.92772 3.95839 4.02335 4.11179 4.13382 4.18871 4.25931 4.33242 4.34443 4.47174 4.52593 4.61599 4.65250 4.78774 4.83666 4.93788 4.94335 4.98031 5.01266 5.02742 5.09942 5.17757 5.19420 5.28439 5.40322 5.43554 5.58241 5.69251 6.43740 6.67360 6.74569 7.13645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.093 4.093 3 C -0.062 4.062 4 C -0.181 4.181 5 C 0.555 3.445 6 O -0.564 6.564 7 N -0.709 5.709 8 C 0.146 3.854 9 H 0.069 0.931 10 C -0.120 4.120 11 C -0.137 4.137 12 C 0.076 3.924 13 H 0.078 0.922 14 O -0.389 6.389 15 C 0.398 3.602 16 F -0.220 7.220 17 F -0.218 7.218 18 C -0.108 4.108 19 C -0.113 4.113 20 C 0.158 3.842 21 O -0.492 6.492 22 C -0.160 4.160 23 C -0.076 4.076 24 O -0.555 6.555 25 Si 0.792 3.208 26 C -0.070 4.070 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.161 0.839 31 H 0.414 0.586 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.207 0.793 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.398 0.602 42 H 0.095 0.905 43 H 0.392 0.608 44 H -0.301 1.301 45 H -0.276 1.276 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.565 1.452 1.564 10.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.093 4.093 3 C -0.080 4.080 4 C -0.185 4.185 5 C 0.343 3.657 6 O -0.444 6.444 7 N -0.361 5.361 8 C 0.042 3.958 9 H 0.087 0.913 10 C -0.159 4.159 11 C -0.176 4.176 12 C 0.020 3.980 13 H 0.096 0.904 14 O -0.311 6.311 15 C 0.307 3.693 16 F -0.202 7.202 17 F -0.200 7.200 18 C -0.146 4.146 19 C -0.151 4.151 20 C 0.111 3.889 21 O -0.304 6.304 22 C -0.161 4.161 23 C -0.185 4.185 24 O -0.363 6.363 25 Si 0.696 3.304 26 C -0.088 4.088 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.178 0.822 31 H 0.253 0.747 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.223 0.777 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.257 0.743 42 H 0.113 0.887 43 H 0.242 0.758 44 H -0.229 1.229 45 H -0.202 1.202 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.294 0.903 1.984 9.546 hybrid contribution 0.854 0.306 0.215 0.933 sum -8.440 1.209 2.199 8.805 Atomic orbital electron populations 1.20940 0.87697 1.04918 1.03858 1.20164 0.98291 0.91660 0.99198 1.21452 0.90815 1.00070 0.95688 1.20421 0.95203 0.92405 1.10482 1.18375 0.86939 0.84481 0.75895 1.90815 1.15084 1.87925 1.50549 1.45823 1.10936 1.04525 1.74861 1.21004 0.95937 0.82776 0.96119 0.91301 1.21790 1.00772 0.96190 0.97158 1.22055 0.99251 0.94338 1.01920 1.22446 0.94298 0.81922 0.99339 0.90353 1.88439 1.70684 1.33947 1.38001 1.23853 0.78253 0.92526 0.74705 1.93042 1.89531 1.80438 1.57207 1.93042 1.38245 1.93243 1.95478 1.21512 1.01647 0.97713 0.93701 1.21728 0.98488 0.91783 1.03116 1.18611 0.83457 0.91062 0.95733 1.84771 1.15660 1.96099 1.33849 1.20778 0.94967 0.95061 1.05308 1.25300 1.04163 1.00030 0.88989 1.86536 1.38621 1.94106 1.17036 0.93801 0.80923 0.72928 0.82774 1.21317 0.91685 0.99553 0.96212 0.89821 0.89894 0.89471 0.82189 0.74734 0.93368 0.90253 0.91212 0.91588 0.77731 0.89075 0.90961 0.88946 0.88805 0.74317 0.88726 0.75816 1.22926 1.20223 0.81853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.35 10.00 71.24 0.71 2.07 16 2 C -0.09 0.55 5.87 -19.90 -0.12 0.43 16 3 C -0.06 0.25 9.18 22.52 0.21 0.46 16 4 C -0.18 -0.69 5.89 -20.01 -0.12 -0.80 16 5 C 0.55 3.94 7.73 86.70 0.67 4.61 16 6 O -0.56 -9.16 14.83 16.91 0.25 -8.91 16 7 N -0.71 0.54 5.03 -445.69 -2.24 -1.70 16 8 C 0.15 0.02 2.45 44.99 0.11 0.13 16 9 H 0.07 0.38 7.58 -2.39 -0.02 0.36 16 10 C -0.12 -0.27 5.49 30.60 0.17 -0.10 16 11 C -0.14 -0.35 5.39 30.59 0.17 -0.18 16 12 C 0.08 -0.01 2.40 30.59 0.07 0.07 16 13 H 0.08 -0.06 7.20 -2.39 -0.02 -0.07 16 14 O -0.39 -0.49 10.29 -148.98 -1.53 -2.02 16 15 C 0.40 -0.62 6.26 113.37 0.71 0.09 16 16 F -0.22 -0.64 15.46 44.97 0.70 0.06 16 17 F -0.22 -0.33 16.63 44.97 0.75 0.42 16 18 C -0.11 0.36 5.57 30.59 0.17 0.53 16 19 C -0.11 0.67 5.39 30.59 0.16 0.84 16 20 C 0.16 1.06 6.69 22.84 0.15 1.21 16 21 O -0.49 -5.53 10.91 -68.80 -0.75 -6.28 16 22 C -0.16 -0.24 5.27 -19.79 -0.10 -0.34 16 23 C -0.08 -0.14 2.38 71.24 0.17 0.03 16 24 O -0.56 -2.56 12.88 -148.98 -1.92 -4.48 16 25 Si 0.79 -2.36 29.91 68.60 2.05 -0.30 16 26 C -0.07 0.31 8.30 22.30 0.19 0.50 16 27 H 0.08 -1.02 8.14 -2.38 -0.02 -1.04 16 28 H 0.08 -1.09 8.08 -2.39 -0.02 -1.11 16 29 H 0.09 -1.17 8.08 -2.39 -0.02 -1.19 16 30 H 0.16 -1.75 6.40 -2.91 -0.02 -1.77 16 31 H 0.41 -3.27 6.63 -92.71 -0.61 -3.89 16 32 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.07 0.31 6.50 -2.39 -0.02 0.29 16 35 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.21 -2.05 8.14 -2.39 -0.02 -2.07 16 37 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 38 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 39 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 40 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 41 H 0.40 2.06 9.06 -74.05 -0.67 1.39 16 42 H 0.10 0.39 7.83 -2.39 -0.02 0.37 16 43 H 0.39 -1.69 8.70 -74.05 -0.64 -2.34 16 44 H -0.30 -1.58 7.11 99.48 0.71 -0.88 16 45 H -0.28 -0.13 7.11 99.48 0.71 0.57 16 46 H 0.16 -1.74 5.10 -2.91 -0.01 -1.76 16 Total: 0.00 -28.21 378.87 -0.21 -28.42 By element: Atomic # 1 Polarization: -13.89 SS G_CDS: -0.83 Total: -14.72 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 3.32 Total: 9.53 kcal Atomic # 7 Polarization: 0.54 SS G_CDS: -2.24 Total: -1.70 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -3.95 Total: -21.69 kcal Atomic # 9 Polarization: -0.97 SS G_CDS: 1.44 Total: 0.47 kcal Atomic # 14 Polarization: -2.36 SS G_CDS: 2.05 Total: -0.30 kcal Total: -28.21 -0.21 -28.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100670_13422088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -221.316 kcal (2) G-P(sol) polarization free energy of solvation -28.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds