Wall clock time and date at job start Sun Mar 7 2021 05:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86303 * 109.47205 * 2 1 4 4 C 1.50701 * 109.47202 * 239.99892 * 2 1 3 5 5 C 1.34177 * 125.44006 * 300.36507 * 4 2 1 6 6 C 1.47017 * 105.95553 * 180.14143 * 5 4 2 7 7 C 1.47373 * 127.19471 * 179.83110 * 6 5 4 8 8 O 1.21617 * 120.00367 * 359.70917 * 7 6 5 9 9 N 1.34779 * 120.00601 * 179.71025 * 7 6 5 10 10 C 1.46492 * 120.00439 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47370 * 35.00472 * 10 9 7 12 12 C 1.53003 * 109.47226 * 154.99974 * 10 9 7 13 13 C 1.53002 * 109.47160 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47273 * 299.99998 * 13 12 10 15 15 H 1.09005 * 109.47028 * 300.00210 * 14 13 12 16 16 O 1.42899 * 109.46972 * 180.02562 * 14 13 12 17 17 C 1.42905 * 113.99778 * 150.00330 * 16 14 13 18 18 F 1.39897 * 109.46886 * 299.99616 * 17 16 14 19 19 F 1.39898 * 109.47456 * 59.99835 * 17 16 14 20 20 C 1.53003 * 109.47026 * 59.99919 * 14 13 12 21 21 C 1.53001 * 109.47192 * 274.99963 * 10 9 7 22 22 C 1.36421 * 105.61547 * 359.57289 * 6 5 4 23 23 O 1.33652 * 108.39630 * 0.25710 * 22 6 5 24 24 H 0.96701 * 113.99918 * 59.99867 * 1 2 3 25 25 H 1.09000 * 109.47140 * 120.00334 * 2 1 3 26 26 H 1.48498 * 110.00039 * 298.67975 * 3 2 1 27 27 H 1.48494 * 109.99713 * 60.00104 * 3 2 1 28 28 H 1.07994 * 127.02497 * 359.97438 * 5 4 2 29 29 H 0.97008 * 119.99894 * 0.02562 * 9 7 6 30 30 H 1.09005 * 109.46980 * 59.99829 * 12 10 9 31 31 H 1.08997 * 109.47405 * 300.00126 * 12 10 9 32 32 H 1.09005 * 109.46657 * 180.02562 * 13 12 10 33 33 H 1.08994 * 109.46969 * 60.00436 * 13 12 10 34 34 H 1.09001 * 109.47103 * 180.02562 * 17 16 14 35 35 H 1.09001 * 109.46539 * 60.00101 * 20 14 13 36 36 H 1.08993 * 109.46966 * 180.02562 * 20 14 13 37 37 H 1.08999 * 109.47129 * 299.99769 * 21 10 9 38 38 H 1.08995 * 109.47022 * 60.00297 * 21 10 9 39 39 H 1.07999 * 125.80332 * 180.26188 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.6697 -1.9862 -1.5536 6 6 2.3682 -2.2328 -2.8235 7 6 2.3968 -3.4879 -3.5954 8 8 1.8002 -4.4662 -3.1879 9 7 3.0840 -3.5517 -4.7530 10 6 3.1129 -4.7994 -5.5201 11 1 2.1528 -5.3067 -5.4250 12 6 3.3803 -4.4862 -6.9936 13 6 3.4111 -5.7895 -7.7946 14 6 4.5217 -6.6933 -7.2556 15 1 5.4816 -6.1856 -7.3507 16 8 4.5507 -7.9103 -8.0041 17 6 5.8468 -8.5051 -8.0963 18 9 6.7252 -7.6143 -8.7225 19 9 6.3175 -8.7990 -6.8121 20 6 4.2542 -7.0065 -5.7820 21 6 4.2231 -5.7038 -4.9812 22 6 2.9797 -1.0554 -3.1409 23 8 2.7066 -0.1661 -2.1813 24 1 -0.3933 0.4417 -0.7650 25 1 1.7923 -0.5139 0.8900 26 1 1.5879 2.4586 -1.2242 27 1 1.5615 2.4678 1.2085 28 1 1.0707 -2.6891 -0.9938 29 1 3.5603 -2.7715 -5.0780 30 1 4.3404 -3.9789 -7.0888 31 1 2.5894 -3.8420 -7.3775 32 1 3.6020 -5.5663 -8.8443 33 1 2.4512 -6.2971 -7.6995 34 1 5.7843 -9.4236 -8.6799 35 1 3.2943 -7.5142 -5.6870 36 1 5.0456 -7.6500 -5.3980 37 1 5.1832 -5.1965 -5.0765 38 1 4.0326 -5.9270 -3.9315 39 1 3.5820 -0.8728 -4.0186 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100670_13456056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:47:56 Heat of formation + Delta-G solvation = -213.609721 kcal Electronic energy + Delta-G solvation = -26630.056928 eV Core-core repulsion = 22176.093108 eV Total energy + Delta-G solvation = -4453.963819 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.07292 -48.18607 -43.72086 -41.11120 -39.79530 -38.17410 -37.71156 -34.99788 -33.87333 -31.95725 -31.93655 -29.92730 -26.81426 -26.35525 -24.99667 -23.92300 -22.94768 -22.30249 -21.46473 -20.75685 -19.50625 -19.26319 -18.75604 -18.64771 -17.95011 -17.57025 -17.38848 -17.24430 -16.43160 -16.13496 -16.03560 -15.75720 -15.61681 -15.17941 -15.04628 -14.85288 -14.61354 -14.42068 -14.25474 -14.20132 -13.99511 -13.76407 -13.57669 -13.41411 -13.26184 -12.95500 -12.83941 -12.44722 -12.24494 -12.14720 -12.00118 -11.54918 -11.26859 -11.09288 -10.97580 -10.78078 -10.19880 -9.78516 -4.91325 0.26247 0.80271 1.18765 1.53191 1.75005 1.91033 1.96378 2.10230 2.23726 2.73014 3.20009 3.44579 3.51047 3.52436 3.55416 3.71850 3.81201 3.93139 3.95241 4.01034 4.04967 4.14453 4.27096 4.33272 4.37363 4.41694 4.51279 4.55916 4.67946 4.81479 4.89976 4.97180 5.03808 5.05477 5.11463 5.13993 5.20232 5.41000 5.60401 5.82453 6.34089 6.46774 7.14224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.047 4.047 3 Si 0.794 3.206 4 C -0.050 4.050 5 C -0.153 4.153 6 C -0.270 4.270 7 C 0.586 3.414 8 O -0.586 6.586 9 N -0.705 5.705 10 C 0.145 3.855 11 H 0.067 0.933 12 C -0.113 4.113 13 C -0.109 4.109 14 C 0.076 3.924 15 H 0.079 0.921 16 O -0.390 6.390 17 C 0.398 3.602 18 F -0.218 7.218 19 F -0.220 7.220 20 C -0.138 4.138 21 C -0.120 4.120 22 C 0.068 3.932 23 O -0.164 6.164 24 H 0.391 0.609 25 H 0.147 0.853 26 H -0.285 1.285 27 H -0.289 1.289 28 H 0.142 0.858 29 H 0.418 0.582 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.206 0.794 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.050 0.950 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.061 4.590 -4.712 8.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.155 4.155 3 Si 0.697 3.303 4 C -0.098 4.098 5 C -0.173 4.173 6 C -0.275 4.275 7 C 0.375 3.625 8 O -0.467 6.467 9 N -0.357 5.357 10 C 0.041 3.959 11 H 0.085 0.915 12 C -0.151 4.151 13 C -0.147 4.147 14 C 0.019 3.981 15 H 0.097 0.903 16 O -0.311 6.311 17 C 0.307 3.693 18 F -0.200 7.200 19 F -0.202 7.202 20 C -0.177 4.177 21 C -0.159 4.159 22 C -0.002 4.002 23 O -0.059 6.059 24 H 0.241 0.759 25 H 0.164 0.836 26 H -0.212 1.212 27 H -0.216 1.216 28 H 0.160 0.840 29 H 0.256 0.744 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.222 0.778 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.069 0.931 39 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 4.468 4.655 -3.932 7.556 hybrid contribution -0.906 -0.501 -0.217 1.057 sum 3.563 4.155 -4.149 6.868 Atomic orbital electron populations 1.86651 1.17518 1.80603 1.50034 1.24718 0.83470 1.13383 0.93903 0.93435 0.89786 0.70123 0.76997 1.22685 0.99534 0.93520 0.94085 1.22546 1.02181 0.96178 0.96367 1.21471 1.09945 0.95910 1.00131 1.17545 0.77819 0.86416 0.80671 1.90796 1.46692 1.38908 1.70340 1.45690 1.52378 1.15508 1.22097 1.21016 0.99010 0.84471 0.91443 0.91476 1.21732 1.04798 0.97413 0.91153 1.21520 0.97977 0.94412 1.00769 1.22463 1.01045 0.84207 0.90355 0.90252 1.88442 1.28374 1.40778 1.73545 1.23838 0.75428 0.91582 0.78469 1.93042 1.71575 1.72911 1.82488 1.93041 1.89332 1.93648 1.44152 1.22054 1.03026 0.98048 0.94525 1.21786 0.99655 0.95385 0.99074 1.25344 0.97149 0.85117 0.92606 1.83720 1.54266 1.40087 1.27839 0.75929 0.83558 1.21162 1.21581 0.84048 0.74450 0.88678 0.88839 0.89165 0.91086 0.77819 0.91681 0.91142 0.89926 0.93121 0.71942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.00 12.86 -148.98 -1.92 -2.91 16 2 C -0.05 0.07 2.97 71.24 0.21 0.28 16 3 Si 0.79 -2.90 32.09 68.60 2.20 -0.70 16 4 C -0.05 -0.02 6.20 24.76 0.15 0.13 16 5 C -0.15 -0.79 10.87 23.65 0.26 -0.53 16 6 C -0.27 -0.55 6.31 -18.99 -0.12 -0.67 16 7 C 0.59 3.31 7.78 86.65 0.67 3.99 16 8 O -0.59 -9.55 16.65 -4.08 -0.07 -9.62 16 9 N -0.71 2.15 5.07 -445.85 -2.26 -0.11 16 10 C 0.15 -0.20 2.45 44.99 0.11 -0.09 16 11 H 0.07 0.31 7.58 -2.39 -0.02 0.30 16 12 C -0.11 0.82 5.39 30.60 0.16 0.98 16 13 C -0.11 0.45 5.57 30.60 0.17 0.62 16 14 C 0.08 -0.08 2.40 30.60 0.07 0.00 16 15 H 0.08 -0.15 7.20 -2.38 -0.02 -0.16 16 16 O -0.39 -0.23 10.29 -148.98 -1.53 -1.77 16 17 C 0.40 -0.88 6.26 113.37 0.71 -0.17 16 18 F -0.22 -0.19 16.63 44.97 0.75 0.56 16 19 F -0.22 -0.46 15.46 44.97 0.70 0.24 16 20 C -0.14 -0.18 5.39 30.58 0.16 -0.01 16 21 C -0.12 -0.04 5.49 30.58 0.17 0.13 16 22 C 0.07 -0.44 11.61 67.40 0.78 0.34 16 23 O -0.16 0.50 8.89 4.42 0.04 0.54 16 24 H 0.39 -1.55 8.70 -74.06 -0.64 -2.20 16 25 H 0.15 -0.57 7.96 -2.39 -0.02 -0.59 16 26 H -0.29 -0.34 7.11 99.48 0.71 0.37 16 27 H -0.29 -0.83 7.11 99.48 0.71 -0.13 16 28 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 29 H 0.42 -4.86 7.57 -92.70 -0.70 -5.56 16 30 H 0.09 -1.04 8.14 -2.38 -0.02 -1.06 16 31 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 32 H 0.09 -0.50 8.14 -2.38 -0.02 -0.52 16 33 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 34 H 0.21 -2.14 8.14 -2.39 -0.02 -2.16 16 35 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.07 0.22 6.50 -2.39 -0.02 0.20 16 37 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 38 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.27 -4.79 7.47 -2.91 -0.02 -4.81 16 Total: 0.00 -25.91 337.04 1.22 -24.68 By element: Atomic # 1 Polarization: -15.72 SS G_CDS: -0.20 Total: -15.92 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 3.52 Total: 5.00 kcal Atomic # 7 Polarization: 2.15 SS G_CDS: -2.26 Total: -0.11 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -3.48 Total: -13.75 kcal Atomic # 9 Polarization: -0.65 SS G_CDS: 1.44 Total: 0.79 kcal Atomic # 14 Polarization: -2.90 SS G_CDS: 2.20 Total: -0.70 kcal Total: -25.91 1.22 -24.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100670_13456056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.928 kcal (2) G-P(sol) polarization free energy of solvation -25.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds