Wall clock time and date at job start Sun Mar 7 2021 05:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86298 * 109.47315 * 2 1 4 4 C 1.50700 * 109.47151 * 239.99775 * 2 1 3 5 5 C 1.34856 * 125.88990 * 119.97535 * 4 2 1 6 6 C 1.40893 * 107.41387 * 180.02562 * 5 4 2 7 7 C 1.34845 * 107.42021 * 0.02562 * 6 5 4 8 8 C 1.50699 * 125.89014 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.46919 * 274.97009 * 8 7 6 10 10 O 1.21288 * 120.00160 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00107 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00002 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47152 * 35.00010 * 12 11 9 14 14 C 1.53007 * 109.46869 * 154.99469 * 12 11 9 15 15 C 1.53001 * 109.46893 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.46919 * 300.00079 * 15 14 12 17 17 H 1.09001 * 109.47223 * 299.99790 * 16 15 14 18 18 O 1.42900 * 109.47250 * 180.02562 * 16 15 14 19 19 C 1.42900 * 114.00499 * 149.99723 * 18 16 15 20 20 F 1.39897 * 109.47226 * 300.00218 * 19 18 16 21 21 F 1.39907 * 109.46690 * 60.00347 * 19 18 16 22 22 C 1.52998 * 109.47235 * 60.00321 * 16 15 14 23 23 C 1.52992 * 109.47115 * 274.99345 * 12 11 9 24 24 N 1.36341 * 125.89116 * 300.00415 * 4 2 1 25 25 H 0.96707 * 113.99600 * 300.00018 * 1 2 3 26 26 H 1.09001 * 109.47160 * 120.00256 * 2 1 3 27 27 H 1.48496 * 109.99974 * 178.68152 * 3 2 1 28 28 H 1.48500 * 109.99840 * 299.99891 * 3 2 1 29 29 H 1.07999 * 126.28963 * 0.02562 * 5 4 2 30 30 H 1.07995 * 126.28880 * 179.97438 * 6 5 4 31 31 H 1.08995 * 109.47269 * 34.97104 * 8 7 6 32 32 H 1.09004 * 109.46839 * 154.97540 * 8 7 6 33 33 H 0.97000 * 119.99707 * 359.97438 * 11 9 8 34 34 H 1.08997 * 109.47155 * 299.99821 * 14 12 11 35 35 H 1.09002 * 109.46791 * 60.00320 * 14 12 11 36 36 H 1.09001 * 109.47001 * 60.00004 * 15 14 12 37 37 H 1.08999 * 109.46909 * 180.02562 * 15 14 12 38 38 H 1.08996 * 109.47232 * 180.02562 * 19 18 16 39 39 H 1.08992 * 109.47328 * 59.99879 * 22 16 15 40 40 H 1.09004 * 109.47341 * 180.02562 * 22 16 15 41 41 H 1.09002 * 109.47654 * 300.00358 * 23 12 11 42 42 H 1.09007 * 109.47038 * 60.00366 * 23 12 11 43 43 H 0.97006 * 125.63619 * 0.23473 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7095 -0.1726 -2.1916 6 6 2.9441 -1.1745 -3.1539 7 6 2.3000 -2.2862 -2.7446 8 6 2.2745 -3.6089 -3.4664 9 6 1.1816 -3.5939 -4.5039 10 8 0.4910 -2.6065 -4.6431 11 7 0.9708 -4.6780 -5.2764 12 6 -0.0912 -4.6632 -6.2854 13 1 -0.1740 -3.6632 -6.7112 14 6 0.2443 -5.6632 -7.3937 15 6 -0.8652 -5.6483 -8.4472 16 6 -2.1933 -6.0369 -7.7945 17 1 -2.1100 -7.0368 -7.3687 18 8 -3.2295 -6.0235 -8.7784 19 6 -4.2837 -6.9543 -8.5252 20 9 -3.7622 -8.2521 -8.4926 21 9 -4.8797 -6.6601 -7.2941 22 6 -2.5288 -5.0369 -6.6862 23 6 -1.4196 -5.0515 -5.6332 24 7 1.6770 -2.0077 -1.5642 25 1 -0.3933 0.4417 0.7651 26 1 1.7923 -0.5139 0.8900 27 1 3.5346 1.7702 0.0321 28 1 1.5615 2.4678 -1.2085 29 1 3.0839 0.8400 -2.2186 30 1 3.5312 -1.0709 -4.0544 31 1 3.2353 -3.7757 -3.9532 32 1 2.0855 -4.4095 -2.7512 33 1 1.5229 -5.4678 -5.1648 34 1 1.1907 -5.3866 -7.8584 35 1 0.3271 -6.6632 -6.9679 36 1 -0.9484 -4.6483 -8.8730 37 1 -0.6263 -6.3610 -9.2365 38 1 -5.0297 -6.8827 -9.3167 39 1 -2.6121 -4.0370 -7.1120 40 1 -3.4748 -5.3140 -6.2209 41 1 -1.3369 -6.0515 -5.2074 42 1 -1.6587 -4.3390 -4.8436 43 1 1.1381 -2.6286 -1.0493 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100670_14644196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:48:02 Heat of formation + Delta-G solvation = -192.034640 kcal Electronic energy + Delta-G solvation = -28488.102027 eV Core-core repulsion = 23977.254816 eV Total energy + Delta-G solvation = -4510.847210 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.143 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.10378 -48.21718 -42.46124 -41.10515 -39.84995 -37.81347 -37.62694 -34.85956 -33.27425 -32.10881 -31.98587 -30.45552 -29.02900 -26.41056 -25.18591 -23.98745 -23.35505 -21.82101 -21.52130 -21.44453 -20.97033 -19.41970 -18.86547 -18.68025 -18.46949 -18.32794 -18.04276 -17.30132 -16.49879 -16.25290 -15.85535 -15.72817 -15.39635 -15.23706 -15.10482 -14.97397 -14.94324 -14.63692 -14.63337 -14.42209 -14.24902 -14.12701 -13.76769 -13.56940 -13.46261 -13.38963 -13.29595 -12.97179 -12.79231 -12.57104 -12.45421 -12.27608 -12.05860 -12.02407 -11.57656 -11.15541 -10.99750 -10.46273 -10.13911 -9.97970 -9.08472 -4.99282 0.93073 1.26253 1.57191 1.64606 1.71989 1.95617 2.04848 2.21292 2.38712 2.69871 3.43349 3.44835 3.48754 3.58989 3.69127 3.77583 3.88186 3.89830 3.92585 3.99527 4.05087 4.12282 4.13719 4.22990 4.26264 4.31552 4.33582 4.49447 4.55564 4.64041 4.64604 4.78869 4.92851 5.00097 5.02269 5.04287 5.11071 5.12453 5.17721 5.44855 5.56907 5.82045 5.94954 6.48069 6.58075 6.83535 7.23409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.570 6.570 2 C -0.060 4.060 3 Si 0.816 3.184 4 C 0.019 3.981 5 C -0.229 4.229 6 C -0.201 4.201 7 C 0.038 3.962 8 C -0.065 4.065 9 C 0.510 3.490 10 O -0.579 6.579 11 N -0.712 5.712 12 C 0.145 3.855 13 H 0.063 0.937 14 C -0.113 4.113 15 C -0.109 4.109 16 C 0.077 3.923 17 H 0.079 0.921 18 O -0.390 6.390 19 C 0.398 3.602 20 F -0.218 7.218 21 F -0.220 7.220 22 C -0.138 4.138 23 C -0.119 4.119 24 N -0.531 5.531 25 H 0.406 0.594 26 H 0.099 0.901 27 H -0.287 1.287 28 H -0.309 1.309 29 H 0.126 0.874 30 H 0.142 0.858 31 H 0.147 0.853 32 H 0.134 0.866 33 H 0.420 0.580 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.206 0.794 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.048 0.952 43 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.087 -5.259 2.985 6.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.381 6.381 2 C -0.169 4.169 3 Si 0.721 3.279 4 C -0.095 4.095 5 C -0.254 4.254 6 C -0.226 4.226 7 C -0.076 4.076 8 C -0.105 4.105 9 C 0.297 3.703 10 O -0.457 6.457 11 N -0.365 5.365 12 C 0.040 3.960 13 H 0.081 0.919 14 C -0.151 4.151 15 C -0.147 4.147 16 C 0.020 3.980 17 H 0.097 0.903 18 O -0.312 6.312 19 C 0.307 3.693 20 F -0.200 7.200 21 F -0.202 7.202 22 C -0.177 4.177 23 C -0.157 4.157 24 N -0.126 5.126 25 H 0.258 0.742 26 H 0.116 0.884 27 H -0.214 1.214 28 H -0.238 1.238 29 H 0.143 0.857 30 H 0.160 0.840 31 H 0.165 0.835 32 H 0.152 0.848 33 H 0.258 0.742 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.223 0.777 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.067 0.933 43 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 2.080 -4.309 1.907 5.151 hybrid contribution -0.209 -0.923 0.152 0.958 sum 1.871 -5.231 2.060 5.926 Atomic orbital electron populations 1.86460 1.17463 1.82494 1.51659 1.24619 0.85656 1.11470 0.95192 0.94498 0.76851 0.72993 0.83561 1.20158 1.04268 0.85536 0.99538 1.20708 1.07485 0.99741 0.97452 1.20790 1.07384 0.93023 1.01370 1.19955 1.00940 0.97624 0.89058 1.20276 1.00201 0.93525 0.96486 1.21043 0.84706 0.82397 0.82198 1.90780 1.50015 1.34945 1.69991 1.45888 1.36293 1.17254 1.37020 1.20942 0.86439 1.00124 0.88529 0.91863 1.21721 0.98985 0.99828 0.94545 1.21526 0.91218 1.03417 0.98564 1.22446 0.87578 0.99616 0.88336 0.90321 1.88440 1.33564 1.59257 1.49897 1.23849 0.87333 0.73079 0.85059 1.93042 1.88414 1.41604 1.96948 1.93042 1.84276 1.92901 1.49971 1.22053 0.99282 1.00164 0.96174 1.21767 0.94131 1.02232 0.97607 1.41847 1.40465 1.10854 1.19433 0.74224 0.88362 1.21424 1.23780 0.85655 0.84048 0.83505 0.84798 0.74233 0.88919 0.88930 0.91174 0.89220 0.77744 0.91860 0.91206 0.90091 0.93309 0.73871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -1.43 12.86 -148.98 -1.92 -3.34 16 2 C -0.06 -0.12 3.07 71.24 0.22 0.09 16 3 Si 0.82 0.54 30.58 68.60 2.10 2.64 16 4 C 0.02 0.18 6.54 41.08 0.27 0.44 16 5 C -0.23 -2.84 9.37 22.14 0.21 -2.63 16 6 C -0.20 -2.11 10.76 22.14 0.24 -1.87 16 7 C 0.04 0.23 5.66 41.08 0.23 0.47 16 8 C -0.06 0.20 6.24 29.10 0.18 0.38 16 9 C 0.51 1.61 7.79 87.66 0.68 2.29 16 10 O -0.58 -8.82 15.70 -3.05 -0.05 -8.86 16 11 N -0.71 2.50 5.08 -442.52 -2.25 0.25 16 12 C 0.14 -0.08 2.45 44.99 0.11 0.03 16 13 H 0.06 0.37 7.58 -2.39 -0.02 0.35 16 14 C -0.11 0.67 5.39 30.60 0.16 0.83 16 15 C -0.11 0.31 5.57 30.59 0.17 0.48 16 16 C 0.08 0.01 2.40 30.59 0.07 0.08 16 17 H 0.08 -0.05 7.20 -2.39 -0.02 -0.07 16 18 O -0.39 -0.62 10.29 -148.98 -1.53 -2.16 16 19 C 0.40 -0.56 6.26 113.37 0.71 0.15 16 20 F -0.22 -0.36 16.63 44.97 0.75 0.39 16 21 F -0.22 -0.63 15.46 44.97 0.70 0.07 16 22 C -0.14 -0.34 5.39 30.58 0.16 -0.18 16 23 C -0.12 -0.15 5.49 30.57 0.17 0.02 16 24 N -0.53 -3.30 6.07 -171.12 -1.04 -4.34 16 25 H 0.41 -3.64 8.74 -74.05 -0.65 -4.29 16 26 H 0.10 -0.35 7.96 -2.39 -0.02 -0.37 16 27 H -0.29 -1.66 7.11 99.48 0.71 -0.96 16 28 H -0.31 -3.23 7.11 99.48 0.71 -2.52 16 29 H 0.13 1.52 6.22 -2.91 -0.02 1.50 16 30 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 31 H 0.15 -1.30 8.14 -2.39 -0.02 -1.31 16 32 H 0.13 -1.29 8.14 -2.38 -0.02 -1.31 16 33 H 0.42 -4.69 8.60 -92.71 -0.80 -5.49 16 34 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 35 H 0.09 -0.86 8.14 -2.39 -0.02 -0.88 16 36 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.09 -0.39 8.14 -2.39 -0.02 -0.40 16 38 H 0.21 -2.01 8.14 -2.39 -0.02 -2.03 16 39 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.07 0.29 6.50 -2.38 -0.02 0.28 16 41 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 42 H 0.05 0.33 8.14 -2.38 -0.02 0.31 16 43 H 0.42 0.56 8.96 -92.70 -0.83 -0.27 16 Total: 0.00 -30.97 360.53 -0.82 -31.79 By element: Atomic # 1 Polarization: -15.84 SS G_CDS: -1.17 Total: -17.01 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 3.59 Total: 0.59 kcal Atomic # 7 Polarization: -0.81 SS G_CDS: -3.29 Total: -4.10 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -3.50 Total: -14.36 kcal Atomic # 9 Polarization: -0.99 SS G_CDS: 1.44 Total: 0.45 kcal Atomic # 14 Polarization: 0.54 SS G_CDS: 2.10 Total: 2.64 kcal Total: -30.97 -0.82 -31.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100670_14644196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.249 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds