Wall clock time and date at job start Sun Mar 7 2021 05:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86303 * 109.46775 * 2 1 4 4 C 1.50696 * 109.46893 * 239.99796 * 2 1 3 5 5 C 1.31117 * 118.54150 * 120.02388 * 4 2 1 6 6 N 1.38927 * 121.84710 * 179.61455 * 5 4 2 7 7 C 1.47033 * 118.88004 * 13.28985 * 6 5 4 8 8 C 1.53555 * 107.64903 * 316.32559 * 7 6 5 9 9 C 1.50199 * 118.54878 * 299.99754 * 4 2 1 10 10 C 1.50699 * 109.33060 * 320.31587 * 9 4 2 11 11 O 1.21292 * 119.99825 * 239.99888 * 10 9 4 12 12 N 1.34772 * 120.00302 * 60.00100 * 10 9 4 13 13 C 1.46500 * 120.00198 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47092 * 34.99790 * 13 12 10 15 15 C 1.53005 * 109.47094 * 154.99525 * 13 12 10 16 16 C 1.52999 * 109.47159 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47317 * 300.00546 * 16 15 13 18 18 H 1.09002 * 109.47153 * 299.99641 * 17 16 15 19 19 O 1.42896 * 109.46906 * 179.97438 * 17 16 15 20 20 C 1.42898 * 114.00068 * 150.00283 * 19 17 16 21 21 F 1.39905 * 109.46984 * 299.99764 * 20 19 17 22 22 F 1.39899 * 109.47502 * 59.99432 * 20 19 17 23 23 C 1.53000 * 109.47060 * 59.99960 * 17 16 15 24 24 C 1.52997 * 109.47007 * 274.99841 * 13 12 10 25 25 H 0.96701 * 113.99770 * 60.00036 * 1 2 3 26 26 H 1.08999 * 109.47004 * 120.00011 * 2 1 3 27 27 H 1.48494 * 110.00194 * 60.00249 * 3 2 1 28 28 H 1.48501 * 109.99480 * 181.31698 * 3 2 1 29 29 H 1.07997 * 119.08031 * 359.59525 * 5 4 2 30 30 H 0.96996 * 120.55986 * 193.27622 * 6 5 4 31 31 H 1.08994 * 109.82105 * 75.87923 * 7 6 5 32 32 H 1.09008 * 109.82024 * 196.73375 * 7 6 5 33 33 H 1.09002 * 109.63883 * 301.24727 * 8 7 6 34 34 H 1.09004 * 109.62115 * 180.68799 * 8 7 6 35 35 H 1.09004 * 109.32867 * 79.97158 * 9 4 2 36 36 H 0.97002 * 119.99692 * 359.97438 * 12 10 9 37 37 H 1.09002 * 109.46935 * 60.00169 * 15 13 12 38 38 H 1.09000 * 109.47360 * 300.00194 * 15 13 12 39 39 H 1.08996 * 109.46929 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.46716 * 60.00455 * 16 15 13 41 41 H 1.08999 * 109.47053 * 180.02562 * 20 19 17 42 42 H 1.08992 * 109.47399 * 59.99823 * 23 17 16 43 43 H 1.09004 * 109.46724 * 180.02562 * 23 17 16 44 44 H 1.09002 * 109.46695 * 299.99637 * 24 13 12 45 45 H 1.08993 * 109.47194 * 59.99623 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.6835 -0.0461 -2.0742 6 7 3.1901 -0.6355 -3.2258 7 6 2.6451 -1.9304 -3.6595 8 6 2.5136 -2.8204 -2.4151 9 6 1.5487 -2.1483 -1.4355 10 6 1.5961 -2.8706 -0.1138 11 8 2.3401 -3.8171 0.0337 12 7 0.8118 -2.4649 0.9044 13 6 0.8583 -3.1667 2.1895 14 1 1.8770 -3.5025 2.3835 15 6 0.4128 -2.2187 3.3048 16 6 0.4607 -2.9519 4.6468 17 6 -0.4753 -4.1612 4.6011 18 1 -1.4939 -3.8252 4.4069 19 8 -0.4300 -4.8462 5.8543 20 6 -1.6476 -5.5104 6.1981 21 9 -2.6836 -4.5734 6.2770 22 9 -1.9528 -6.4615 5.2186 23 6 -0.0296 -5.1092 3.4859 24 6 -0.0774 -4.3764 2.1441 25 1 -0.3933 0.4417 -0.7651 26 1 1.7924 -0.5138 0.8900 27 1 1.5615 2.4679 1.2085 28 1 3.5346 1.7703 -0.0321 29 1 2.9156 0.9884 -1.8685 30 1 3.8912 -0.2000 -3.7352 31 1 1.6659 -1.7852 -4.1156 32 1 3.3218 -2.3945 -4.3771 33 1 3.4896 -2.9387 -1.9444 34 1 2.1223 -3.7963 -2.7027 35 1 0.5369 -2.1985 -1.8380 36 1 0.2170 -1.7078 0.7865 37 1 -0.6060 -1.8830 3.1108 38 1 1.0794 -1.3569 3.3371 39 1 0.1437 -2.2764 5.4413 40 1 1.4793 -3.2879 4.8410 41 1 -1.5318 -6.0054 7.1623 42 1 0.9889 -5.4452 3.6800 43 1 -0.6968 -5.9706 3.4531 44 1 -1.0961 -4.0406 1.9502 45 1 0.2400 -5.0516 1.3496 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100670_15608500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:48:10 Heat of formation + Delta-G solvation = -205.092616 kcal Electronic energy + Delta-G solvation = -30659.274518 eV Core-core repulsion = 26120.549593 eV Total energy + Delta-G solvation = -4538.724925 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.158 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.09840 -48.21203 -41.72241 -40.31164 -39.18604 -37.90753 -37.44715 -34.73176 -33.38173 -32.73505 -32.01183 -30.03532 -27.29879 -26.48083 -25.60954 -24.02367 -23.35484 -23.09806 -21.60645 -21.29549 -19.46983 -19.24861 -18.99433 -18.74777 -18.67453 -18.05378 -17.58983 -17.06063 -16.68689 -16.17396 -16.00110 -15.72476 -15.56053 -15.39347 -15.20865 -14.97767 -14.73788 -14.64045 -14.57907 -14.46384 -14.30002 -14.09998 -13.75739 -13.74548 -13.45793 -13.31853 -13.15293 -12.83530 -12.60982 -12.45905 -12.30074 -12.17456 -12.03210 -11.94004 -11.85551 -11.59640 -11.38453 -11.13709 -10.75985 -10.29862 -9.96121 -8.43644 -4.98685 1.24414 1.35924 1.63369 1.72967 1.94523 2.02118 2.31038 2.66781 2.70017 3.39195 3.46770 3.48500 3.68475 3.69833 3.79089 3.84908 3.89616 3.94182 3.99613 4.03537 4.09989 4.20103 4.26055 4.31618 4.33051 4.37445 4.49902 4.57094 4.62708 4.70974 4.77320 4.80154 4.86246 4.91191 4.97571 4.99148 5.11225 5.15785 5.21131 5.26355 5.43768 5.53801 5.56048 6.31436 6.57587 6.94057 6.98392 7.35424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.059 4.059 3 Si 0.771 3.229 4 C -0.300 4.300 5 C 0.164 3.836 6 N -0.746 5.746 7 C 0.124 3.876 8 C -0.122 4.122 9 C -0.032 4.032 10 C 0.516 3.484 11 O -0.591 6.591 12 N -0.715 5.715 13 C 0.139 3.861 14 H 0.065 0.935 15 C -0.114 4.114 16 C -0.107 4.107 17 C 0.078 3.922 18 H 0.077 0.923 19 O -0.388 6.388 20 C 0.398 3.602 21 F -0.219 7.219 22 F -0.219 7.219 23 C -0.136 4.136 24 C -0.117 4.117 25 H 0.402 0.598 26 H 0.091 0.909 27 H -0.301 1.301 28 H -0.297 1.297 29 H 0.149 0.851 30 H 0.414 0.586 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.422 0.578 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.208 0.792 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.967 5.649 -4.417 7.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.170 4.170 3 Si 0.679 3.321 4 C -0.312 4.312 5 C 0.041 3.959 6 N -0.376 5.376 7 C 0.000 4.000 8 C -0.161 4.161 9 C -0.053 4.053 10 C 0.304 3.696 11 O -0.472 6.472 12 N -0.375 5.375 13 C 0.034 3.966 14 H 0.083 0.917 15 C -0.152 4.152 16 C -0.145 4.145 17 C 0.021 3.979 18 H 0.095 0.905 19 O -0.310 6.310 20 C 0.307 3.693 21 F -0.201 7.201 22 F -0.201 7.201 23 C -0.174 4.174 24 C -0.156 4.156 25 H 0.255 0.745 26 H 0.109 0.891 27 H -0.229 1.229 28 H -0.225 1.225 29 H 0.166 0.834 30 H 0.250 0.750 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.128 0.872 36 H 0.268 0.732 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.224 0.776 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.864 5.191 -3.336 6.231 hybrid contribution -0.003 -0.547 0.013 0.548 sum -0.867 4.644 -3.323 5.776 Atomic orbital electron populations 1.86075 1.17459 1.81734 1.51400 1.24935 0.85276 1.09554 0.97263 0.94116 0.77202 0.75606 0.85195 1.20479 1.14584 0.94874 1.01218 1.20586 0.92562 0.96145 0.86619 1.44690 1.43268 1.22665 1.26939 1.21675 1.00468 0.82944 0.94924 1.21704 0.99112 0.98968 0.96267 1.19644 1.01875 0.92463 0.91284 1.21169 0.78577 0.82965 0.86865 1.90668 1.41725 1.30777 1.83988 1.46713 1.43600 1.35612 1.11547 1.20973 0.99463 0.92548 0.83633 0.91691 1.21694 1.03428 0.97743 0.92345 1.21499 0.99984 0.95141 0.97853 1.22399 1.00859 0.92657 0.81950 0.90542 1.88431 1.34229 1.68489 1.39857 1.23868 0.74968 0.77793 0.92697 1.93044 1.61949 1.68292 1.96802 1.93040 1.93388 1.65718 1.67968 1.22045 1.02788 0.98655 0.93917 1.21756 1.00291 0.96859 0.96710 0.74535 0.89127 1.22950 1.22531 0.83405 0.75022 0.90465 0.88543 0.93139 0.90672 0.87194 0.73234 0.89710 0.90008 0.89333 0.90852 0.77601 0.91455 0.90862 0.90683 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 3.30 10.41 -148.98 -1.55 1.74 16 2 C -0.06 0.16 1.68 71.23 0.12 0.28 16 3 Si 0.77 -3.18 29.68 68.60 2.04 -1.14 16 4 C -0.30 0.56 5.11 -16.76 -0.09 0.47 16 5 C 0.16 -0.73 9.63 83.41 0.80 0.07 16 6 N -0.75 4.24 5.83 -345.86 -2.02 2.22 16 7 C 0.12 -0.63 7.16 86.46 0.62 -0.01 16 8 C -0.12 -0.21 4.92 30.79 0.15 -0.06 16 9 C -0.03 -0.05 2.64 -12.43 -0.03 -0.08 16 10 C 0.52 4.25 6.79 87.66 0.59 4.85 16 11 O -0.59 -9.94 15.46 -3.07 -0.05 -9.99 16 12 N -0.72 -2.97 3.53 -442.52 -1.56 -4.53 16 13 C 0.14 0.64 2.45 44.99 0.11 0.75 16 14 H 0.06 0.62 7.58 -2.39 -0.02 0.60 16 15 C -0.11 -0.01 5.39 30.60 0.16 0.16 16 16 C -0.11 -0.06 5.57 30.59 0.17 0.11 16 17 C 0.08 0.20 2.40 30.59 0.07 0.28 16 18 H 0.08 0.18 7.20 -2.39 -0.02 0.17 16 19 O -0.39 -1.18 10.29 -148.98 -1.53 -2.72 16 20 C 0.40 -0.08 6.26 113.37 0.71 0.63 16 21 F -0.22 -0.70 16.63 44.97 0.75 0.04 16 22 F -0.22 -0.85 15.46 44.97 0.70 -0.15 16 23 C -0.14 -0.60 5.39 30.58 0.16 -0.43 16 24 C -0.12 -0.56 5.49 30.58 0.17 -0.39 16 25 H 0.40 -5.60 8.70 -74.06 -0.64 -6.25 16 26 H 0.09 0.16 6.18 -2.39 -0.01 0.14 16 27 H -0.30 -1.09 7.11 99.48 0.71 -0.39 16 28 H -0.30 -0.56 7.10 99.48 0.71 0.15 16 29 H 0.15 -1.24 4.37 -2.91 -0.01 -1.25 16 30 H 0.41 -3.90 8.96 -92.71 -0.83 -4.73 16 31 H 0.08 -0.55 8.14 -2.39 -0.02 -0.57 16 32 H 0.10 -0.73 8.14 -2.38 -0.02 -0.75 16 33 H 0.05 0.39 7.75 -2.39 -0.02 0.37 16 34 H 0.07 0.18 8.14 -2.38 -0.02 0.16 16 35 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 36 H 0.42 0.40 4.62 -92.71 -0.43 -0.03 16 37 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 38 H 0.08 -0.05 8.14 -2.39 -0.02 -0.07 16 39 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 40 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 41 H 0.21 -1.84 8.14 -2.39 -0.02 -1.86 16 42 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.07 0.39 6.50 -2.39 -0.02 0.38 16 44 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 45 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 Total: 0.00 -20.80 351.93 -0.32 -21.12 By element: Atomic # 1 Polarization: -12.39 SS G_CDS: -0.82 Total: -13.21 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 3.73 Total: 6.62 kcal Atomic # 7 Polarization: 1.26 SS G_CDS: -3.58 Total: -2.31 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -3.13 Total: -10.96 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 1.44 Total: -0.11 kcal Atomic # 14 Polarization: -3.18 SS G_CDS: 2.04 Total: -1.14 kcal Total: -20.80 -0.32 -21.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100670_15608500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.973 kcal (2) G-P(sol) polarization free energy of solvation -20.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds