Wall clock time and date at job start Sun Mar 7 2021 05:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86304 * 109.47083 * 2 1 4 4 C 1.50699 * 109.46840 * 240.00193 * 2 1 3 5 5 C 1.38251 * 119.97278 * 120.00039 * 4 2 1 6 6 C 1.38284 * 120.11341 * 180.02562 * 5 4 2 7 7 C 1.38128 * 120.05421 * 359.97438 * 6 5 4 8 8 C 1.38751 * 119.94409 * 359.97438 * 7 6 5 9 9 O 1.35899 * 120.05621 * 180.02562 * 8 7 6 10 10 C 1.42902 * 116.99732 * 359.97438 * 9 8 7 11 11 C 1.53004 * 109.47178 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47208 * 179.97438 * 11 10 9 13 13 O 1.21283 * 119.99803 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99675 * 180.27843 * 12 11 10 15 15 C 1.46497 * 119.99525 * 179.72583 * 14 12 11 16 16 H 1.09007 * 109.47747 * 35.00142 * 15 14 12 17 17 C 1.53006 * 109.47036 * 154.99621 * 15 14 12 18 18 C 1.52998 * 109.47344 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.46921 * 300.00334 * 18 17 15 20 20 H 1.08999 * 109.47539 * 299.99851 * 19 18 17 21 21 O 1.42909 * 109.47203 * 179.97438 * 19 18 17 22 22 C 1.42897 * 114.00277 * 149.99651 * 21 19 18 23 23 F 1.39906 * 109.47216 * 300.00388 * 22 21 19 24 24 F 1.39904 * 109.47175 * 59.99849 * 22 21 19 25 25 C 1.52999 * 109.47579 * 59.99872 * 19 18 17 26 26 C 1.52998 * 109.47099 * 300.00018 * 25 19 18 27 27 C 1.38163 * 119.97418 * 300.25245 * 4 2 1 28 28 H 0.96701 * 113.99803 * 299.99585 * 1 2 3 29 29 H 1.08995 * 109.47301 * 120.00115 * 2 1 3 30 30 H 1.48494 * 110.00151 * 178.68337 * 3 2 1 31 31 H 1.48496 * 110.00040 * 300.00415 * 3 2 1 32 32 H 1.08007 * 119.93950 * 359.97438 * 5 4 2 33 33 H 1.07997 * 119.97177 * 179.97438 * 6 5 4 34 34 H 1.07996 * 120.02276 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.47600 * 60.00051 * 10 9 8 36 36 H 1.08998 * 109.47515 * 300.00028 * 10 9 8 37 37 H 1.09009 * 109.46730 * 59.99802 * 11 10 9 38 38 H 1.08998 * 109.46846 * 300.00347 * 11 10 9 39 39 H 0.97000 * 119.99894 * 359.71837 * 14 12 11 40 40 H 1.09001 * 109.47081 * 299.99960 * 17 15 14 41 41 H 1.09002 * 109.47134 * 59.99771 * 17 15 14 42 42 H 1.09002 * 109.47122 * 59.99850 * 18 17 15 43 43 H 1.08998 * 109.47333 * 180.02562 * 18 17 15 44 44 H 1.08994 * 109.47370 * 179.97438 * 22 21 19 45 45 H 1.09002 * 109.47185 * 60.00042 * 25 19 18 46 46 H 1.09001 * 109.47276 * 180.02562 * 25 19 18 47 47 H 1.09002 * 109.47122 * 300.00063 * 26 25 19 48 48 H 1.08998 * 109.47333 * 179.97438 * 26 25 19 49 49 H 1.07997 * 120.02793 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7260 -0.0379 -2.1402 6 6 3.1881 -0.6868 -3.2705 7 6 2.8568 -2.0092 -3.4932 8 6 2.0602 -2.6866 -2.5812 9 8 1.7333 -3.9878 -2.7977 10 6 2.2442 -4.5960 -3.9856 11 6 1.7738 -6.0502 -4.0569 12 6 2.3121 -6.6914 -5.3100 13 8 3.0034 -6.0484 -6.0713 14 7 2.0201 -7.9776 -5.5876 15 6 2.5384 -8.5991 -6.8087 16 1 3.5314 -8.2044 -7.0242 17 6 2.6233 -10.1142 -6.6134 18 6 3.1640 -10.7635 -7.8889 19 6 2.2262 -10.4516 -9.0568 20 1 1.2333 -10.8462 -8.8411 21 8 2.7315 -11.0575 -10.2484 22 6 1.7190 -11.4308 -11.1851 23 9 0.8499 -12.3517 -10.5902 24 9 1.0003 -10.2946 -11.5725 25 6 2.1413 -8.9365 -9.2523 26 6 1.6006 -8.2873 -7.9768 27 6 1.5928 -2.0316 -1.4513 28 1 -0.3933 0.4417 0.7651 29 1 1.7924 -0.5138 0.8899 30 1 3.5345 1.7704 0.0321 31 1 1.5614 2.4679 -1.2084 32 1 2.9858 0.9962 -1.9680 33 1 3.8085 -0.1592 -3.9798 34 1 3.2176 -2.5153 -4.3763 35 1 3.3337 -4.5665 -3.9693 36 1 1.8791 -4.0533 -4.8576 37 1 0.6842 -6.0792 -4.0735 38 1 2.1385 -6.5931 -3.1849 39 1 1.4669 -8.4916 -4.9788 40 1 3.2911 -10.3364 -5.7810 41 1 1.6304 -10.5090 -6.3979 42 1 4.1569 -10.3688 -8.1048 43 1 3.2241 -11.8429 -7.7499 44 1 2.1835 -11.8827 -12.0615 45 1 3.1341 -8.5418 -9.4682 46 1 1.4728 -8.7143 -10.0841 47 1 0.6078 -8.6820 -7.7609 48 1 1.5405 -7.2078 -8.1158 49 1 0.9689 -2.5554 -0.7423 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100670_4549614.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:48:30 Heat of formation + Delta-G solvation = -244.709683 kcal Electronic energy + Delta-G solvation = -32962.305111 eV Core-core repulsion = 27912.153699 eV Total energy + Delta-G solvation = -5050.151412 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.163 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -50.09894 -48.21284 -41.56143 -41.15562 -39.97735 -39.13036 -37.77914 -37.33396 -34.89872 -33.39182 -32.70578 -31.97524 -31.12943 -29.88018 -27.11877 -26.46951 -25.34708 -23.96977 -23.83915 -23.19648 -21.99871 -21.56896 -21.09250 -19.43405 -19.22296 -18.80320 -18.67494 -18.40801 -17.97680 -17.66079 -17.53731 -17.40572 -17.00976 -16.36899 -16.13221 -15.90697 -15.69105 -15.43336 -15.30284 -15.09926 -14.85391 -14.67028 -14.65873 -14.53569 -14.50222 -14.23724 -14.19823 -14.04008 -13.74843 -13.49525 -13.42247 -13.29307 -13.08169 -12.88257 -12.80823 -12.46315 -12.41883 -12.26754 -12.17657 -12.02276 -11.91555 -11.82233 -11.57226 -11.16850 -11.03548 -10.44125 -10.17811 -9.98583 -9.43222 -4.94456 0.04298 0.20544 1.27378 1.47554 1.61881 1.64676 1.97156 1.98596 2.40766 2.48619 2.70667 3.35637 3.44816 3.49427 3.50371 3.67600 3.69662 3.75444 3.78641 3.80473 3.83312 3.90304 3.93057 3.99676 4.03551 4.12106 4.12975 4.14587 4.25784 4.30004 4.34752 4.38094 4.49601 4.55101 4.62552 4.65160 4.69692 4.79290 4.83011 4.94757 5.01241 5.02926 5.07686 5.11684 5.17856 5.18909 5.26682 5.41013 5.51955 5.57557 6.20077 6.42697 6.90099 7.12232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.082 4.082 3 Si 0.783 3.217 4 C -0.052 4.052 5 C -0.181 4.181 6 C -0.076 4.076 7 C -0.211 4.211 8 C 0.124 3.876 9 O -0.318 6.318 10 C 0.072 3.928 11 C -0.132 4.132 12 C 0.520 3.480 13 O -0.583 6.583 14 N -0.711 5.711 15 C 0.144 3.856 16 H 0.071 0.929 17 C -0.114 4.114 18 C -0.108 4.108 19 C 0.075 3.925 20 H 0.077 0.923 21 O -0.389 6.389 22 C 0.398 3.602 23 F -0.219 7.219 24 F -0.220 7.220 25 C -0.138 4.138 26 C -0.121 4.121 27 C -0.135 4.135 28 H 0.405 0.595 29 H 0.098 0.902 30 H -0.287 1.287 31 H -0.299 1.299 32 H 0.121 0.879 33 H 0.149 0.851 34 H 0.142 0.858 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.420 0.580 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.206 0.794 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.078 0.922 48 H 0.053 0.947 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.250 -3.476 4.782 6.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.191 4.191 3 Si 0.689 3.311 4 C -0.052 4.052 5 C -0.199 4.199 6 C -0.094 4.094 7 C -0.230 4.230 8 C 0.078 3.922 9 O -0.232 6.232 10 C -0.004 4.004 11 C -0.171 4.171 12 C 0.308 3.692 13 O -0.463 6.463 14 N -0.362 5.362 15 C 0.039 3.961 16 H 0.089 0.911 17 C -0.152 4.152 18 C -0.146 4.146 19 C 0.019 3.981 20 H 0.095 0.905 21 O -0.311 6.311 22 C 0.307 3.693 23 F -0.201 7.201 24 F -0.202 7.202 25 C -0.176 4.176 26 C -0.160 4.160 27 C -0.153 4.153 28 H 0.256 0.744 29 H 0.116 0.884 30 H -0.215 1.215 31 H -0.227 1.227 32 H 0.139 0.861 33 H 0.166 0.834 34 H 0.160 0.840 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.258 0.742 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.222 0.778 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.072 0.928 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.174 -2.930 3.392 4.485 hybrid contribution -0.315 -0.416 -0.587 0.786 sum -0.489 -3.346 2.805 4.393 Atomic orbital electron populations 1.86445 1.16986 1.82477 1.51444 1.24904 0.86092 1.11275 0.96871 0.94422 0.77169 0.74900 0.84580 1.19542 0.96338 0.93437 0.95876 1.20981 1.02748 0.99647 0.96491 1.21154 0.97753 0.93936 0.96595 1.21526 1.03411 0.96583 1.01459 1.19132 0.94652 0.83680 0.94703 1.85959 1.71311 1.22275 1.43656 1.22483 0.99055 0.93450 0.85371 1.21440 1.04951 0.93660 0.97091 1.20624 0.79387 0.82241 0.86993 1.90744 1.40254 1.63522 1.51783 1.45887 1.53640 1.11825 1.24893 1.21003 0.97479 0.93800 0.83813 0.91119 1.21727 1.03874 0.91731 0.97884 1.21517 0.98882 1.02404 0.91844 1.22465 0.98901 0.92398 0.84365 0.90522 1.88439 1.33213 1.78871 1.30592 1.23845 0.78106 0.75789 0.91573 1.93044 1.73330 1.67314 1.86379 1.93042 1.80918 1.54854 1.91374 1.22061 1.02437 0.94723 0.98403 1.21801 0.99800 1.00434 0.93923 1.20366 1.03117 0.94272 0.97588 0.74371 0.88389 1.21459 1.22677 0.86145 0.83376 0.84038 0.91536 0.91890 0.85531 0.85225 0.74242 0.88884 0.89191 0.90891 0.89358 0.77769 0.91470 0.91234 0.90334 0.92771 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.57 12.74 -148.98 -1.90 -2.46 16 2 C -0.08 -0.08 2.81 71.24 0.20 0.12 16 3 Si 0.78 -0.80 29.79 68.60 2.04 1.24 16 4 C -0.05 -0.38 5.42 -19.88 -0.11 -0.49 16 5 C -0.18 -1.41 8.67 22.28 0.19 -1.22 16 6 C -0.08 -0.49 10.04 22.25 0.22 -0.27 16 7 C -0.21 -1.49 9.04 22.37 0.20 -1.29 16 8 C 0.12 1.02 6.69 22.51 0.15 1.17 16 9 O -0.32 -1.91 10.14 -92.41 -0.94 -2.85 16 10 C 0.07 0.19 4.03 71.98 0.29 0.48 16 11 C -0.13 0.46 6.07 29.85 0.18 0.64 16 12 C 0.52 0.52 7.79 87.66 0.68 1.20 16 13 O -0.58 -6.05 15.65 -3.04 -0.05 -6.10 16 14 N -0.71 3.18 5.08 -442.52 -2.25 0.93 16 15 C 0.14 -0.31 2.45 44.99 0.11 -0.20 16 16 H 0.07 0.21 7.58 -2.38 -0.02 0.19 16 17 C -0.11 0.78 5.39 30.60 0.16 0.94 16 18 C -0.11 0.42 5.57 30.59 0.17 0.59 16 19 C 0.08 -0.05 2.40 30.59 0.07 0.02 16 20 H 0.08 -0.08 7.20 -2.39 -0.02 -0.10 16 21 O -0.39 -0.31 10.29 -148.98 -1.53 -1.85 16 22 C 0.40 -0.76 6.26 113.37 0.71 -0.05 16 23 F -0.22 -0.31 16.63 44.97 0.75 0.44 16 24 F -0.22 -0.52 15.46 44.97 0.70 0.18 16 25 C -0.14 -0.14 5.39 30.59 0.16 0.02 16 26 C -0.12 0.02 5.49 30.59 0.17 0.19 16 27 C -0.13 -1.09 9.55 22.37 0.21 -0.88 16 28 H 0.40 -4.08 8.74 -74.06 -0.65 -4.73 16 29 H 0.10 -0.33 7.96 -2.39 -0.02 -0.35 16 30 H -0.29 -1.19 7.11 99.48 0.71 -0.49 16 31 H -0.30 -2.05 7.11 99.48 0.71 -1.34 16 32 H 0.12 0.78 4.87 -2.91 -0.01 0.76 16 33 H 0.15 0.25 8.06 -2.91 -0.02 0.23 16 34 H 0.14 0.66 6.30 -2.91 -0.02 0.64 16 35 H 0.07 0.25 7.62 -2.39 -0.02 0.23 16 36 H 0.06 0.28 7.62 -2.39 -0.02 0.26 16 37 H 0.13 -0.88 8.14 -2.38 -0.02 -0.90 16 38 H 0.13 -0.99 8.14 -2.39 -0.02 -1.01 16 39 H 0.42 -4.67 8.60 -92.71 -0.80 -5.46 16 40 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 41 H 0.09 -0.86 8.14 -2.39 -0.02 -0.87 16 42 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 43 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 44 H 0.21 -2.10 8.14 -2.39 -0.02 -2.12 16 45 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 46 H 0.07 0.21 6.50 -2.39 -0.02 0.19 16 47 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 48 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 49 H 0.14 0.88 8.06 -2.91 -0.02 0.86 16 Total: 0.00 -24.96 403.60 0.21 -24.75 By element: Atomic # 1 Polarization: -14.85 SS G_CDS: -0.41 Total: -15.26 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 3.79 Total: 0.98 kcal Atomic # 7 Polarization: 3.18 SS G_CDS: -2.25 Total: 0.93 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -4.42 Total: -13.26 kcal Atomic # 9 Polarization: -0.83 SS G_CDS: 1.44 Total: 0.62 kcal Atomic # 14 Polarization: -0.80 SS G_CDS: 2.04 Total: 1.24 kcal Total: -24.96 0.21 -24.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100670_4549614.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -219.958 kcal (2) G-P(sol) polarization free energy of solvation -24.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds