Wall clock time and date at job start Sun Mar 7 2021 01:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 116.99832 * 2 1 4 4 O 1.20830 * 119.99775 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00135 * 180.02562 * 3 2 1 6 6 H 1.08999 * 112.91070 * 48.74502 * 5 3 2 7 7 C 1.53776 * 113.61807 * 179.97438 * 5 3 2 8 8 C 1.53779 * 87.08527 * 139.97751 * 7 5 3 9 9 C 1.53006 * 113.61122 * 89.19905 * 8 7 5 10 10 N 1.46501 * 109.46893 * 191.85199 * 9 8 7 11 11 C 1.34776 * 119.99800 * 175.03575 * 10 9 8 12 12 O 1.21590 * 120.00244 * 0.02562 * 11 10 9 13 13 C 1.47564 * 119.99842 * 179.97438 * 11 10 9 14 14 C 1.39833 * 120.00168 * 359.72917 * 13 11 10 15 15 C 1.36555 * 119.99819 * 179.73893 * 14 13 11 16 16 C 1.39827 * 120.00199 * 0.55490 * 15 14 13 17 17 C 1.47557 * 120.00003 * 179.71860 * 16 15 14 18 18 C 1.34982 * 125.27835 * 359.97438 * 17 16 15 19 19 C 1.37791 * 114.70011 * 179.97438 * 18 17 16 20 20 C 1.33738 * 115.08551 * 0.02562 * 19 18 17 21 21 C 1.50700 * 125.12411 * 180.02562 * 20 19 18 22 22 O 1.42901 * 109.46842 * 300.00162 * 21 20 19 23 23 Si 1.86299 * 109.47578 * 179.97438 * 21 20 19 24 24 S 1.75859 * 109.76002 * 359.76955 * 20 19 18 25 25 C 1.39822 * 119.99748 * 359.69617 * 16 15 14 26 26 C 1.36563 * 120.00523 * 0.02562 * 25 16 15 27 27 O 1.42900 * 113.61790 * 220.01985 * 8 7 5 28 28 C 1.42899 * 114.00014 * 294.06499 * 27 8 7 29 29 C 1.53784 * 87.17233 * 334.60953 * 8 7 5 30 30 H 1.09002 * 109.47243 * 300.00057 * 1 2 3 31 31 H 1.08999 * 109.47621 * 60.00542 * 1 2 3 32 32 H 1.08997 * 109.46845 * 180.02562 * 1 2 3 33 33 H 1.09006 * 113.61581 * 25.43128 * 7 5 3 34 34 H 1.09005 * 113.61776 * 254.53164 * 7 5 3 35 35 H 1.08995 * 109.47247 * 311.85626 * 9 8 7 36 36 H 1.09003 * 109.46657 * 71.85732 * 9 8 7 37 37 H 0.97005 * 120.00016 * 355.04097 * 10 9 8 38 38 H 1.08002 * 119.99781 * 0.02562 * 14 13 11 39 39 H 1.07997 * 120.00300 * 180.27973 * 15 14 13 40 40 H 1.07997 * 122.64492 * 359.94122 * 18 17 16 41 41 H 1.08003 * 122.46017 * 179.97438 * 19 18 17 42 42 H 1.09003 * 109.46923 * 59.99697 * 21 20 19 43 43 H 0.96703 * 113.99827 * 299.99636 * 22 21 20 44 44 H 1.48501 * 109.99619 * 58.68388 * 23 21 20 45 45 H 1.48501 * 110.00000 * 179.97438 * 23 21 20 46 46 H 1.08004 * 119.99830 * 180.02562 * 25 16 15 47 47 H 1.08002 * 120.00039 * 180.02562 * 26 25 16 48 48 H 1.09001 * 109.47302 * 294.90374 * 28 27 8 49 49 H 1.08993 * 109.47222 * 174.89971 * 28 27 8 50 50 H 1.09011 * 109.46914 * 54.90045 * 28 27 8 51 51 H 1.09005 * 113.61161 * 139.93526 * 29 8 7 52 52 H 1.08990 * 113.61427 * 270.83899 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 1 4.0244 0.6362 -0.7557 7 6 4.1077 2.7142 -0.0011 8 6 5.1813 2.2272 0.9862 9 6 6.4449 1.6974 0.3053 10 7 7.2777 1.0053 1.2921 11 6 8.3982 0.3674 0.8995 12 8 8.7181 0.3667 -0.2735 13 6 9.2373 -0.3292 1.8935 14 6 8.8730 -0.3227 3.2436 15 6 9.6467 -0.9719 4.1626 16 6 10.8095 -1.6333 3.7554 17 6 11.6488 -2.3295 4.7495 18 6 11.3963 -2.3953 6.0739 19 6 12.3262 -3.1042 6.8028 20 6 13.3345 -3.6171 6.0895 21 6 14.4714 -4.4290 6.6547 22 8 15.1823 -3.6477 7.6170 23 14 15.6265 -4.9224 5.2787 24 16 13.1301 -3.2078 4.3914 25 6 11.1765 -1.6354 2.4063 26 6 10.3998 -0.9910 1.4863 27 8 5.4636 3.1602 2.0311 28 6 6.0654 4.3748 1.5789 29 6 4.1936 1.1224 1.3971 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.4173 3.4406 0.4278 34 1 4.5104 3.0290 -0.9639 35 1 6.1666 1.0023 -0.4868 36 1 7.0038 2.5301 -0.1217 37 1 7.0226 1.0061 2.2280 38 1 7.9773 0.1918 3.5587 39 1 9.3631 -0.9708 5.2047 40 1 10.5339 -1.9286 6.5264 41 1 12.2472 -3.2353 7.8719 42 1 14.0753 -5.3240 7.1345 43 1 15.5631 -2.8340 7.2590 44 1 16.1487 -3.7117 4.5955 45 1 16.7523 -5.7231 5.8233 46 1 12.0744 -2.1466 2.0917 47 1 10.6831 -0.9930 0.4441 48 1 7.0510 4.1601 1.1658 49 1 6.1651 5.0648 2.4167 50 1 5.4392 4.8259 0.8091 51 1 4.6657 0.1537 1.5615 52 1 3.5269 1.4127 2.2090 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15102698_13308390.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:03:10 Heat of formation + Delta-G solvation = -96.932006 kcal Electronic energy + Delta-G solvation = -36233.020424 eV Core-core repulsion = 31257.524436 eV Total energy + Delta-G solvation = -4975.495988 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 418.137 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.26680 -41.37098 -40.58959 -39.75208 -39.00341 -37.71454 -37.46772 -36.85352 -35.61107 -33.53278 -32.28202 -30.70497 -29.80839 -28.55089 -28.16174 -27.11756 -26.61202 -25.60028 -24.52736 -23.87631 -23.30391 -22.11304 -21.60662 -20.30676 -20.24300 -19.34652 -19.02929 -18.61204 -18.13630 -17.72442 -17.52538 -17.17620 -16.76213 -16.71468 -16.41303 -16.36571 -16.28653 -16.14480 -16.03794 -15.65321 -15.49779 -15.39340 -14.94063 -14.57831 -14.45180 -14.43261 -14.32070 -14.23895 -13.85125 -13.78528 -13.61464 -13.53047 -13.27475 -13.20033 -13.08576 -12.93455 -12.76268 -12.64631 -12.53114 -12.41009 -12.07773 -12.04731 -11.86336 -11.57792 -11.51220 -11.44457 -11.20257 -10.86697 -10.66741 -10.63862 -10.22288 -10.16350 -9.53296 -9.01201 -5.08033 -0.87276 0.26916 0.36434 0.40680 0.77805 1.02338 1.21338 1.53258 1.57626 1.66185 1.85354 1.92635 1.97564 2.68315 2.85099 3.13096 3.26118 3.31337 3.33674 3.39493 3.45024 3.67360 3.73983 3.77140 3.86950 3.89763 4.10622 4.22433 4.25698 4.27328 4.29442 4.33393 4.42302 4.42756 4.49650 4.53297 4.54964 4.58978 4.61076 4.63277 4.65744 4.68922 4.77986 4.86403 4.90524 4.94776 5.03325 5.03741 5.12727 5.23079 5.27253 5.30927 5.31290 5.34566 5.50092 5.75443 6.08841 6.37990 6.41503 6.62021 7.08969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.472 3.528 4 O -0.537 6.537 5 C -0.108 4.108 6 H 0.152 0.848 7 C -0.135 4.135 8 C 0.085 3.915 9 C 0.116 3.884 10 N -0.706 5.706 11 C 0.560 3.440 12 O -0.577 6.577 13 C -0.149 4.149 14 C -0.068 4.068 15 C -0.109 4.109 16 C 0.007 3.993 17 C -0.159 4.159 18 C -0.117 4.117 19 C -0.110 4.110 20 C -0.219 4.219 21 C -0.034 4.034 22 O -0.539 6.539 23 Si 0.710 3.290 24 S 0.124 5.876 25 C -0.128 4.128 26 C -0.062 4.062 27 O -0.376 6.376 28 C 0.022 3.978 29 C -0.095 4.095 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.129 0.871 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.416 0.584 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.166 0.834 41 H 0.154 0.846 42 H 0.139 0.861 43 H 0.388 0.612 44 H -0.267 1.267 45 H -0.272 1.272 46 H 0.134 0.866 47 H 0.131 0.869 48 H 0.046 0.954 49 H 0.097 0.903 50 H 0.051 0.949 51 H 0.109 0.891 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.131 -2.051 2.499 3.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.316 3.684 4 O -0.426 6.426 5 C -0.126 4.126 6 H 0.169 0.831 7 C -0.173 4.173 8 C 0.045 3.955 9 C -0.008 4.008 10 N -0.358 5.358 11 C 0.349 3.651 12 O -0.458 6.458 13 C -0.153 4.153 14 C -0.086 4.086 15 C -0.129 4.129 16 C 0.005 3.995 17 C -0.276 4.276 18 C -0.148 4.148 19 C -0.141 4.141 20 C -0.337 4.337 21 C -0.146 4.146 22 O -0.347 6.347 23 Si 0.612 3.388 24 S 0.392 5.608 25 C -0.147 4.147 26 C -0.081 4.081 27 O -0.294 6.294 28 C -0.074 4.074 29 C -0.132 4.132 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.147 0.853 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.254 0.746 38 H 0.176 0.824 39 H 0.176 0.824 40 H 0.183 0.817 41 H 0.171 0.829 42 H 0.157 0.843 43 H 0.237 0.763 44 H -0.192 1.192 45 H -0.198 1.198 46 H 0.152 0.848 47 H 0.149 0.851 48 H 0.064 0.936 49 H 0.115 0.885 50 H 0.069 0.931 51 H 0.128 0.872 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.709 -2.544 0.614 2.712 hybrid contribution -0.707 1.623 1.631 2.407 sum -1.416 -0.921 2.244 2.809 Atomic orbital electron populations 1.23539 0.74967 1.05672 1.02462 1.86517 1.24798 1.32962 1.83439 1.23877 0.92367 0.81072 0.71039 1.90679 1.67839 1.37483 1.46628 1.22493 0.86350 1.01252 1.02552 0.83091 1.23526 0.97110 0.95165 1.01465 1.22960 0.91966 0.91281 0.89340 1.21623 0.90105 0.97449 0.91657 1.45609 1.24069 1.53523 1.12630 1.18402 0.80859 0.78183 0.87693 1.90792 1.72491 1.62685 1.19847 1.19988 0.97651 1.03438 0.94207 1.21236 0.99825 0.96854 0.90721 1.21175 0.93242 0.96917 1.01532 1.18458 0.93973 0.95638 0.91472 1.23180 1.00634 1.06787 0.97027 1.20633 1.01650 1.00820 0.91647 1.20178 0.93230 0.98548 1.02097 1.25095 1.03468 1.08709 0.96391 1.24460 0.94472 0.95838 0.99821 1.86600 1.71878 1.39219 1.37047 0.94481 0.81745 0.82854 0.79712 1.84194 1.20455 1.49416 1.06780 1.21038 1.00754 1.00859 0.92058 1.20947 0.92702 0.93969 1.00468 1.87946 1.81493 1.27846 1.32154 1.22893 0.96965 0.85878 1.01649 1.23040 0.96215 0.99319 0.94649 0.91983 0.92079 0.85273 0.88459 0.88344 0.89015 0.90918 0.74599 0.82415 0.82391 0.81709 0.82876 0.84307 0.76287 1.19206 1.19766 0.84771 0.85082 0.93577 0.88505 0.93075 0.87217 0.88394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.69 10.57 -51.39 -0.54 -1.24 16 3 C 0.47 1.45 7.49 71.23 0.53 1.98 16 4 O -0.54 -5.15 15.65 21.95 0.34 -4.80 16 5 C -0.11 0.36 3.91 -10.96 -0.04 0.32 16 6 H 0.15 -1.10 7.60 -2.39 -0.02 -1.11 16 7 C -0.13 0.39 5.88 31.12 0.18 0.57 16 8 C 0.08 -0.35 0.79 -10.26 -0.01 -0.36 16 9 C 0.12 -0.35 4.75 86.38 0.41 0.06 16 10 N -0.71 1.80 5.42 -466.23 -2.53 -0.72 16 11 C 0.56 2.06 7.76 86.70 0.67 2.73 16 12 O -0.58 -6.78 16.33 -4.00 -0.07 -6.85 16 13 C -0.15 -0.18 5.88 -20.05 -0.12 -0.30 16 14 C -0.07 0.29 9.48 22.26 0.21 0.50 16 15 C -0.11 0.44 9.48 22.26 0.21 0.65 16 16 C 0.01 0.00 5.88 -20.05 -0.12 -0.12 16 17 C -0.16 0.07 6.37 23.98 0.15 0.23 16 18 C -0.12 0.30 9.64 21.41 0.21 0.50 16 19 C -0.11 0.19 10.00 21.14 0.21 0.40 16 20 C -0.22 0.25 5.73 24.66 0.14 0.40 16 21 C -0.03 0.06 2.96 71.24 0.21 0.27 16 22 O -0.54 -0.43 12.86 -148.98 -1.92 -2.34 16 23 Si 0.71 -1.11 30.96 68.60 2.12 1.01 16 24 S 0.12 -0.08 19.46 -56.49 -1.10 -1.18 16 25 C -0.13 -0.13 9.54 22.26 0.21 0.08 16 26 C -0.06 -0.18 9.53 22.26 0.21 0.04 16 27 O -0.38 0.64 10.51 -148.98 -1.57 -0.93 16 28 C 0.02 -0.08 10.56 113.37 1.20 1.11 16 29 C -0.09 0.49 7.02 31.18 0.22 0.71 16 30 H 0.06 -0.07 8.13 -2.39 -0.02 -0.09 16 31 H 0.06 -0.06 8.13 -2.39 -0.02 -0.07 16 32 H 0.13 -0.94 8.14 -2.39 -0.02 -0.95 16 33 H 0.10 0.10 7.44 -2.38 -0.02 0.09 16 34 H 0.10 -0.50 8.10 -2.38 -0.02 -0.52 16 35 H 0.09 -0.29 7.30 -2.39 -0.02 -0.31 16 36 H 0.07 -0.10 7.07 -2.39 -0.02 -0.12 16 37 H 0.42 -2.82 6.41 -92.70 -0.59 -3.41 16 38 H 0.16 -1.63 6.38 -2.91 -0.02 -1.65 16 39 H 0.16 -1.45 6.74 -2.91 -0.02 -1.47 16 40 H 0.17 -1.21 6.88 -2.91 -0.02 -1.23 16 41 H 0.15 -0.53 8.06 -2.91 -0.02 -0.56 16 42 H 0.14 -0.58 7.96 -2.39 -0.02 -0.60 16 43 H 0.39 -1.68 8.70 -74.06 -0.64 -2.33 16 44 H -0.27 -0.69 7.11 99.48 0.71 0.01 16 45 H -0.27 -1.25 7.11 99.48 0.71 -0.54 16 46 H 0.13 -0.11 7.26 -2.91 -0.02 -0.13 16 47 H 0.13 0.54 7.64 -2.91 -0.02 0.51 16 48 H 0.05 -0.18 7.07 -2.39 -0.02 -0.19 16 49 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 50 H 0.05 -0.22 7.42 -2.38 -0.02 -0.24 16 51 H 0.11 -0.89 8.10 -2.38 -0.02 -0.91 16 52 H 0.10 -0.34 8.10 -2.39 -0.02 -0.36 16 Total: 0.00 -23.28 445.93 0.44 -22.84 By element: Atomic # 1 Polarization: -16.51 SS G_CDS: -0.21 Total: -16.72 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 5.89 Total: 10.92 kcal Atomic # 7 Polarization: 1.80 SS G_CDS: -2.53 Total: -0.72 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -3.75 Total: -16.15 kcal Atomic # 14 Polarization: -1.11 SS G_CDS: 2.12 Total: 1.01 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -1.10 Total: -1.18 kcal Total: -23.28 0.44 -22.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15102698_13308390.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.090 kcal (2) G-P(sol) polarization free energy of solvation -23.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds