Wall clock time and date at job start Sun Mar 7 2021 01:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 117.00026 * 2 1 4 4 O 1.20826 * 119.99743 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99807 * 179.97438 * 3 2 1 6 6 H 1.09001 * 112.84930 * 311.19352 * 5 3 2 7 7 C 1.53776 * 113.61612 * 82.50326 * 5 3 2 8 8 C 1.54052 * 87.07625 * 139.97525 * 7 5 3 9 9 C 1.53000 * 113.61181 * 89.07726 * 8 7 5 10 10 N 1.46500 * 109.46917 * 208.10319 * 9 8 7 11 11 C 1.34780 * 120.00106 * 176.03682 * 10 9 8 12 12 O 1.21283 * 119.99407 * 4.58998 * 11 10 9 13 13 C 1.50691 * 119.99994 * 184.58934 * 11 10 9 14 14 C 1.53040 * 109.33150 * 215.25454 * 13 11 10 15 15 C 1.53461 * 108.61154 * 190.02436 * 14 13 11 16 16 N 1.47033 * 107.50926 * 61.18749 * 15 14 13 17 17 C 1.38920 * 118.88373 * 316.24713 * 16 15 14 18 18 C 1.31117 * 121.84993 * 13.34114 * 17 16 15 19 19 C 1.50700 * 118.54629 * 179.57395 * 18 17 16 20 20 O 1.42897 * 109.47236 * 106.10392 * 19 18 17 21 21 Si 1.86298 * 109.47183 * 346.10177 * 19 18 17 22 22 O 1.42902 * 113.69085 * 220.05214 * 8 7 5 23 23 C 1.42904 * 114.00061 * 281.98646 * 22 8 7 24 24 C 1.53776 * 86.98618 * 334.56901 * 8 7 5 25 25 H 1.08995 * 109.47149 * 60.00199 * 1 2 3 26 26 H 1.09000 * 109.47141 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46825 * 300.00059 * 1 2 3 28 28 H 1.09000 * 113.61487 * 254.52988 * 7 5 3 29 29 H 1.09001 * 113.61155 * 25.43034 * 7 5 3 30 30 H 1.09001 * 109.47097 * 328.10291 * 9 8 7 31 31 H 1.08993 * 109.47296 * 88.10158 * 9 8 7 32 32 H 0.97002 * 119.99753 * 356.03533 * 10 9 8 33 33 H 1.08999 * 109.33116 * 334.91026 * 13 11 10 34 34 H 1.09002 * 109.61918 * 309.88851 * 14 13 11 35 35 H 1.08998 * 109.62168 * 70.44528 * 14 13 11 36 36 H 1.09000 * 109.97227 * 301.65362 * 15 14 13 37 37 H 1.08999 * 109.87640 * 180.66614 * 15 14 13 38 38 H 0.96998 * 120.55911 * 136.22143 * 16 15 14 39 39 H 1.08005 * 119.07458 * 193.31340 * 17 16 15 40 40 H 1.09005 * 109.46566 * 226.10301 * 19 18 17 41 41 H 0.96698 * 114.00062 * 299.99670 * 20 19 18 42 42 H 1.48502 * 109.99994 * 58.68383 * 21 19 18 43 43 H 1.48501 * 109.99993 * 180.02562 * 21 19 18 44 44 H 1.09000 * 109.47063 * 293.93000 * 23 22 8 45 45 H 1.09002 * 109.46868 * 53.92677 * 23 22 8 46 46 H 1.08997 * 109.46969 * 173.92359 * 23 22 8 47 47 H 1.09007 * 113.61639 * 270.83819 * 24 8 7 48 48 H 1.08998 * 113.61489 * 140.02129 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 4.0233 0.6364 0.7568 7 6 4.1917 1.1231 -1.3961 8 6 5.1831 2.2286 -0.9857 9 6 6.4454 1.6973 -0.3035 10 7 6.9717 2.7145 0.6100 11 6 8.0398 2.4374 1.3839 12 8 8.6162 1.3770 1.2646 13 6 8.5178 3.4452 2.3971 14 6 10.0443 3.3864 2.4889 15 6 10.4954 4.2270 3.6910 16 7 9.8995 3.6314 4.8959 17 6 8.5685 3.2351 4.8606 18 6 7.9061 3.1351 3.7335 19 6 6.4674 2.6889 3.7809 20 8 5.6133 3.8082 3.5368 21 14 6.0931 1.9768 5.4612 22 8 5.4661 3.1625 -2.0296 23 6 6.3880 2.6786 -3.0084 24 6 4.1078 2.7141 0.0006 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 4.6621 0.1538 -1.5609 29 1 3.5243 1.4143 -2.2072 30 1 6.2026 0.7952 0.2581 31 1 7.1958 1.4641 -1.0588 32 1 6.5514 3.5874 0.6579 33 1 8.2134 4.4439 2.0841 34 1 10.3634 2.3527 2.6226 35 1 10.4818 3.7923 1.5769 36 1 10.1502 5.2546 3.5772 37 1 11.5825 4.2090 3.7687 38 1 10.4269 3.5167 5.7019 39 1 8.0653 3.0024 5.7875 40 1 6.2974 1.9290 3.0180 41 1 5.7110 4.5249 4.1787 42 1 6.3515 2.9931 6.5126 43 1 4.6773 1.5325 5.5206 44 1 7.3664 2.5396 -2.5485 45 1 6.0330 1.7262 -3.4022 46 1 6.4676 3.4007 -3.8209 47 1 3.4174 3.4403 -0.4288 48 1 4.5091 3.0297 0.9636 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15102698_15608500.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:03:53 Heat of formation + Delta-G solvation = -138.186763 kcal Electronic energy + Delta-G solvation = -32029.681469 eV Core-core repulsion = 27667.175226 eV Total energy + Delta-G solvation = -4362.506243 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.29068 -41.40610 -40.56508 -39.13649 -37.75725 -37.56314 -36.89744 -35.33619 -33.45211 -32.71847 -29.95615 -28.73878 -28.08081 -27.17875 -26.71340 -25.95224 -25.10701 -23.16111 -22.10354 -21.61511 -20.19111 -19.34391 -19.23831 -18.93861 -18.22531 -18.04539 -17.55042 -17.22526 -17.11129 -16.85713 -16.62360 -16.15252 -15.99282 -15.88070 -15.72352 -15.43094 -14.88224 -14.84070 -14.52150 -14.42910 -14.36545 -14.10068 -13.94330 -13.60956 -13.47719 -13.29378 -13.16631 -13.06879 -12.74559 -12.61891 -12.57415 -12.33005 -12.06653 -11.89285 -11.88947 -11.66902 -11.63796 -11.42820 -11.34675 -10.84471 -10.54761 -10.33486 -10.08238 -8.42729 -4.90249 1.00024 1.28131 1.36085 1.51829 1.61711 1.71089 1.95325 2.14865 2.68297 2.73757 3.14019 3.19590 3.35455 3.45582 3.52921 3.75133 3.83708 3.85044 3.97820 4.07387 4.21507 4.22819 4.24133 4.26023 4.36545 4.40133 4.43526 4.48356 4.56028 4.57260 4.61563 4.62620 4.66243 4.71228 4.78149 4.84180 4.86108 4.87645 4.89288 5.03463 5.22417 5.27358 5.29405 5.40450 5.48177 6.11993 6.34050 6.52228 6.59268 6.67088 6.98059 7.25322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.472 3.528 4 O -0.536 6.536 5 C -0.106 4.106 6 H 0.148 0.852 7 C -0.127 4.127 8 C 0.086 3.914 9 C 0.112 3.888 10 N -0.715 5.715 11 C 0.529 3.471 12 O -0.575 6.575 13 C -0.032 4.032 14 C -0.125 4.125 15 C 0.123 3.877 16 N -0.745 5.745 17 C 0.155 3.845 18 C -0.286 4.286 19 C -0.054 4.054 20 O -0.546 6.546 21 Si 0.736 3.264 22 O -0.381 6.381 23 C 0.020 3.980 24 C -0.101 4.101 25 H 0.061 0.939 26 H 0.131 0.869 27 H 0.059 0.941 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.411 0.589 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.413 0.587 39 H 0.145 0.855 40 H 0.095 0.905 41 H 0.383 0.617 42 H -0.270 1.270 43 H -0.309 1.309 44 H 0.047 0.953 45 H 0.056 0.944 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.038 -0.578 1.807 4.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.316 3.684 4 O -0.426 6.426 5 C -0.125 4.125 6 H 0.165 0.835 7 C -0.165 4.165 8 C 0.046 3.954 9 C -0.012 4.012 10 N -0.367 5.367 11 C 0.316 3.684 12 O -0.454 6.454 13 C -0.053 4.053 14 C -0.164 4.164 15 C -0.002 4.002 16 N -0.375 5.375 17 C 0.032 3.968 18 C -0.297 4.297 19 C -0.165 4.165 20 O -0.354 6.354 21 Si 0.643 3.357 22 O -0.300 6.300 23 C -0.076 4.076 24 C -0.138 4.138 25 H 0.080 0.920 26 H 0.149 0.851 27 H 0.078 0.922 28 H 0.129 0.871 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.248 0.752 33 H 0.112 0.888 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.118 0.882 38 H 0.249 0.751 39 H 0.162 0.838 40 H 0.113 0.887 41 H 0.233 0.767 42 H -0.196 1.196 43 H -0.238 1.238 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.113 0.887 47 H 0.109 0.891 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.518 -1.107 1.805 4.106 hybrid contribution -0.779 1.341 0.000 1.551 sum 2.740 0.234 1.805 3.289 Atomic orbital electron populations 1.23544 0.74965 1.05710 1.02425 1.86513 1.24807 1.32855 1.83480 1.23870 0.92342 0.81121 0.71065 1.90675 1.67815 1.37490 1.46577 1.22395 0.86405 1.01189 1.02493 0.83451 1.23536 0.97398 1.01076 0.94527 1.22991 0.92458 0.90919 0.89035 1.21612 0.94229 0.92034 0.93290 1.45963 1.31876 1.17772 1.41098 1.20824 0.79044 0.87902 0.80602 1.90681 1.57314 1.27434 1.70006 1.19611 0.96158 0.97773 0.91759 1.21778 0.93215 1.01707 0.99712 1.21650 0.99130 0.95784 0.83594 1.44663 1.09456 1.67672 1.15738 1.20698 0.85636 0.93072 0.97387 1.20309 0.97305 1.19375 0.92737 1.24738 0.87981 0.91813 1.11972 1.86524 1.63308 1.29610 1.55914 0.94316 0.81155 0.85964 0.74308 1.88001 1.64648 1.40931 1.36394 1.22932 0.92177 1.01019 0.91428 1.23012 0.95952 0.94890 0.99980 0.91981 0.85127 0.92181 0.87115 0.88636 0.89400 0.90515 0.75222 0.88785 0.91595 0.90155 0.91496 0.88203 0.75061 0.83826 0.88715 0.76750 1.19611 1.23770 0.93459 0.92512 0.88660 0.89079 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.01 10.56 113.37 1.20 1.21 16 2 O -0.36 -1.62 10.57 -51.39 -0.54 -2.17 16 3 C 0.47 3.02 7.48 71.24 0.53 3.56 16 4 O -0.54 -6.95 15.65 21.96 0.34 -6.60 16 5 C -0.11 -0.06 3.91 -11.01 -0.04 -0.10 16 6 H 0.15 -0.47 7.73 -2.39 -0.02 -0.49 16 7 C -0.13 0.23 6.64 31.21 0.21 0.43 16 8 C 0.09 -0.02 0.97 -10.18 -0.01 -0.03 16 9 C 0.11 -0.02 4.97 86.38 0.43 0.41 16 10 N -0.72 -0.54 4.88 -463.07 -2.26 -2.80 16 11 C 0.53 2.21 5.29 87.65 0.46 2.67 16 12 O -0.58 -6.51 16.08 -3.04 -0.05 -6.56 16 13 C -0.03 -0.01 2.71 -12.43 -0.03 -0.04 16 14 C -0.13 0.11 5.28 30.76 0.16 0.27 16 15 C 0.12 -0.67 7.16 86.43 0.62 -0.05 16 16 N -0.75 3.86 5.83 -346.02 -2.02 1.84 16 17 C 0.16 -0.47 9.60 83.41 0.80 0.33 16 18 C -0.29 0.22 5.00 -16.76 -0.08 0.13 16 19 C -0.05 0.00 2.48 71.24 0.18 0.18 16 20 O -0.55 -0.14 12.88 -148.98 -1.92 -2.06 16 21 Si 0.74 -0.67 30.12 68.60 2.07 1.40 16 22 O -0.38 -1.01 10.65 -148.98 -1.59 -2.59 16 23 C 0.02 -0.03 10.32 113.37 1.17 1.14 16 24 C -0.10 -0.20 6.50 31.12 0.20 0.00 16 25 H 0.06 0.06 8.13 -2.39 -0.02 0.04 16 26 H 0.13 -0.71 8.14 -2.39 -0.02 -0.73 16 27 H 0.06 0.08 8.13 -2.39 -0.02 0.06 16 28 H 0.11 -0.63 8.10 -2.39 -0.02 -0.65 16 29 H 0.10 0.00 8.09 -2.39 -0.02 -0.02 16 30 H 0.09 -0.07 7.40 -2.39 -0.02 -0.08 16 31 H 0.08 0.05 6.14 -2.39 -0.01 0.03 16 32 H 0.41 -0.21 7.63 -92.71 -0.71 -0.92 16 33 H 0.09 -0.17 8.09 -2.39 -0.02 -0.19 16 34 H 0.07 0.27 7.50 -2.39 -0.02 0.25 16 35 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 36 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 37 H 0.10 -0.85 8.14 -2.39 -0.02 -0.87 16 38 H 0.41 -3.72 8.96 -92.71 -0.83 -4.55 16 39 H 0.14 -0.79 4.34 -2.91 -0.01 -0.80 16 40 H 0.09 0.19 6.59 -2.38 -0.02 0.18 16 41 H 0.38 -1.90 8.70 -74.06 -0.64 -2.54 16 42 H -0.27 -0.10 6.69 99.48 0.67 0.56 16 43 H -0.31 -2.37 7.11 99.48 0.71 -1.66 16 44 H 0.05 -0.08 6.62 -2.39 -0.02 -0.10 16 45 H 0.06 -0.22 7.86 -2.39 -0.02 -0.23 16 46 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 47 H 0.09 0.59 7.44 -2.38 -0.02 0.57 16 48 H 0.10 0.16 7.12 -2.39 -0.02 0.15 16 Total: 0.00 -21.01 384.59 -1.34 -22.35 By element: Atomic # 1 Polarization: -11.75 SS G_CDS: -1.17 Total: -12.92 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 5.79 Total: 10.11 kcal Atomic # 7 Polarization: 3.32 SS G_CDS: -4.27 Total: -0.95 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -3.75 Total: -19.98 kcal Atomic # 14 Polarization: -0.67 SS G_CDS: 2.07 Total: 1.40 kcal Total: -21.01 -1.34 -22.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15102698_15608500.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.838 kcal (2) G-P(sol) polarization free energy of solvation -21.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds