Wall clock time and date at job start Sun Mar 7 2021 01:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34224 * 117.00344 * 2 1 4 4 O 1.20831 * 120.00091 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00232 * 179.97438 * 3 2 1 6 6 H 1.09002 * 112.84727 * 311.19350 * 5 3 2 7 7 C 1.53778 * 113.69099 * 82.46123 * 5 3 2 8 8 C 1.53778 * 87.08420 * 139.99452 * 7 5 3 9 9 C 1.52999 * 113.61663 * 89.11191 * 8 7 5 10 10 N 1.46511 * 109.47046 * 77.32039 * 9 8 7 11 11 C 1.34767 * 119.99874 * 184.87206 * 10 9 8 12 12 O 1.21703 * 120.00735 * 359.97438 * 11 10 9 13 13 C 1.46589 * 119.99802 * 179.97438 * 11 10 9 14 14 C 1.36648 * 125.45676 * 179.97438 * 13 11 10 15 15 C 1.37478 * 113.29528 * 179.73495 * 14 13 11 16 16 C 1.50691 * 122.44866 * 180.02562 * 15 14 13 17 17 C 1.33823 * 115.09835 * 0.02562 * 15 14 13 18 18 C 1.50697 * 124.51686 * 180.02562 * 17 15 14 19 19 O 1.42906 * 109.47017 * 313.74489 * 18 17 15 20 20 Si 1.86298 * 109.46775 * 193.75013 * 18 17 15 21 21 S 1.70611 * 110.95733 * 359.97438 * 17 15 14 22 22 O 1.42900 * 113.69246 * 220.00859 * 8 7 5 23 23 C 1.42904 * 113.99766 * 171.97250 * 22 8 7 24 24 C 1.53782 * 113.61673 * 179.97438 * 5 3 2 25 25 H 1.09002 * 109.47467 * 300.01134 * 1 2 3 26 26 H 1.09008 * 109.46510 * 60.00525 * 1 2 3 27 27 H 1.09002 * 109.47673 * 180.02562 * 1 2 3 28 28 H 1.09000 * 113.61687 * 25.44417 * 7 5 3 29 29 H 1.09011 * 113.61610 * 254.54147 * 7 5 3 30 30 H 1.09005 * 109.47323 * 317.32265 * 9 8 7 31 31 H 1.09005 * 109.47519 * 197.31947 * 9 8 7 32 32 H 0.96994 * 119.99648 * 4.86740 * 10 9 8 33 33 H 1.07995 * 123.35383 * 359.73981 * 14 13 11 34 34 H 1.09008 * 109.47345 * 96.01827 * 16 15 14 35 35 H 1.08998 * 109.47337 * 216.01494 * 16 15 14 36 36 H 1.09001 * 109.47678 * 336.01941 * 16 15 14 37 37 H 1.08992 * 109.47645 * 73.74857 * 18 17 15 38 38 H 0.96703 * 113.99722 * 300.00275 * 19 18 17 39 39 H 1.48499 * 110.00431 * 58.67747 * 20 18 17 40 40 H 1.48499 * 110.00164 * 179.97438 * 20 18 17 41 41 H 1.09000 * 109.46713 * 185.40061 * 23 22 8 42 42 H 1.09001 * 109.47325 * 305.39649 * 23 22 8 43 43 H 1.08998 * 109.47007 * 65.40209 * 23 22 8 44 44 H 1.08995 * 113.61607 * 105.38415 * 24 5 3 45 45 H 1.08998 * 113.61059 * 334.48328 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 1 4.0233 0.6364 0.7568 7 6 4.1936 1.1223 -1.3952 8 6 5.1829 2.2258 -0.9849 9 6 6.4446 1.6948 -0.3016 10 7 7.3514 1.1429 -1.3114 11 6 8.4883 0.5270 -0.9315 12 8 8.7621 0.4297 0.2503 13 6 9.3952 -0.0258 -1.9418 14 6 10.5726 -0.6693 -1.6830 15 6 11.2225 -1.0914 -2.8185 16 6 12.5385 -1.8241 -2.7718 17 6 10.6009 -0.8042 -3.9683 18 6 11.1224 -1.1673 -5.3347 19 8 12.5085 -0.8304 -5.4206 20 14 10.1730 -0.2257 -6.6320 21 16 9.1388 0.0267 -3.6806 22 8 5.4681 3.1585 -2.0293 23 6 6.2400 4.2849 -1.6078 24 6 4.1078 2.7141 -0.0001 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 3.5274 1.4130 -2.2074 29 1 4.6643 0.1528 -1.5589 30 1 6.1722 0.9135 0.4080 31 1 6.9415 2.5084 0.2269 32 1 7.1333 1.2207 -2.2533 33 1 10.9545 -0.8302 -0.6857 34 1 12.3585 -2.8980 -2.8217 35 1 13.1543 -1.5193 -3.6179 36 1 13.0547 -1.5851 -1.8420 37 1 10.9977 -2.2376 -5.4987 38 1 12.6941 0.1088 -5.2846 39 1 10.3088 1.2349 -6.4007 40 1 10.6780 -0.5744 -7.9842 41 1 6.3323 4.9912 -2.4328 42 1 5.7446 4.7709 -0.7672 43 1 7.2317 3.9518 -1.3019 44 1 4.5092 3.0301 0.9627 45 1 3.4182 3.4398 -0.4311 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15102698_6739946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:05:43 Heat of formation + Delta-G solvation = -129.593344 kcal Electronic energy + Delta-G solvation = -29586.888535 eV Core-core repulsion = 25278.418426 eV Total energy + Delta-G solvation = -4308.470109 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.122 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.24355 -41.12608 -40.38600 -39.66907 -37.71982 -37.48053 -36.86982 -35.56238 -32.35699 -30.15956 -29.97822 -28.68547 -28.13214 -26.87769 -26.26176 -25.32244 -24.16851 -22.11910 -21.79462 -20.47907 -20.05797 -19.32511 -19.12183 -18.19470 -17.81889 -17.49120 -17.37122 -16.96705 -16.79804 -16.52824 -16.33225 -16.27333 -16.03733 -15.67078 -15.48910 -15.02486 -14.69986 -14.51270 -14.45459 -14.29950 -13.90711 -13.84182 -13.54317 -13.47890 -13.25791 -13.14322 -12.94629 -12.89271 -12.75487 -12.60738 -12.38768 -12.32388 -12.02667 -11.84824 -11.73922 -11.58472 -11.44551 -11.35976 -10.76250 -10.66275 -10.37070 -9.76355 -9.37084 -5.10005 -0.65950 0.30308 0.70335 1.04147 1.11213 1.29879 1.54761 1.67301 1.85133 1.88265 2.05897 2.70145 3.14892 3.25882 3.26718 3.32598 3.40318 3.57970 3.73521 3.90122 4.11074 4.12885 4.26849 4.28311 4.30438 4.33435 4.42758 4.49257 4.50420 4.54195 4.59309 4.62652 4.64701 4.69843 4.79290 4.82653 4.85907 4.87690 4.91159 5.02158 5.03500 5.17825 5.32756 5.39929 5.46209 6.08448 6.28907 6.37549 6.63737 6.96931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.472 3.528 4 O -0.537 6.537 5 C -0.108 4.108 6 H 0.153 0.847 7 C -0.096 4.096 8 C 0.083 3.917 9 C 0.114 3.886 10 N -0.709 5.709 11 C 0.593 3.407 12 O -0.567 6.567 13 C -0.282 4.282 14 C -0.059 4.059 15 C -0.101 4.101 16 C -0.105 4.105 17 C -0.238 4.238 18 C -0.035 4.035 19 O -0.530 6.530 20 Si 0.722 3.278 21 S 0.253 5.747 22 O -0.375 6.375 23 C 0.021 3.979 24 C -0.133 4.133 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.129 0.871 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.412 0.588 33 H 0.146 0.854 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.139 0.861 38 H 0.389 0.611 39 H -0.263 1.263 40 H -0.272 1.272 41 H 0.097 0.903 42 H 0.051 0.949 43 H 0.045 0.955 44 H 0.098 0.902 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.574 -1.523 -3.129 3.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.317 3.683 4 O -0.427 6.427 5 C -0.127 4.127 6 H 0.170 0.830 7 C -0.133 4.133 8 C 0.043 3.957 9 C -0.010 4.010 10 N -0.361 5.361 11 C 0.380 3.620 12 O -0.448 6.448 13 C -0.402 4.402 14 C -0.093 4.093 15 C -0.114 4.114 16 C -0.164 4.164 17 C -0.357 4.357 18 C -0.147 4.147 19 O -0.339 6.339 20 Si 0.623 3.377 21 S 0.523 5.477 22 O -0.293 6.293 23 C -0.075 4.075 24 C -0.171 4.171 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.147 0.853 28 H 0.117 0.883 29 H 0.128 0.872 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.249 0.751 33 H 0.163 0.837 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.157 0.843 38 H 0.239 0.761 39 H -0.188 1.188 40 H -0.197 1.197 41 H 0.116 0.884 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.116 0.884 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.788 -0.754 -4.200 5.097 hybrid contribution 1.828 0.266 1.379 2.305 sum -0.959 -0.488 -2.821 3.019 Atomic orbital electron populations 1.23537 0.74998 1.05646 1.02447 1.86516 1.24764 1.32954 1.83437 1.23872 0.92358 0.81064 0.71022 1.90680 1.67855 1.37490 1.46643 1.22467 0.86366 1.01298 1.02530 0.82984 1.23028 0.96216 0.99294 0.94751 1.22976 0.92055 0.91240 0.89419 1.21713 0.88645 0.99660 0.90936 1.45578 1.21138 1.58070 1.11316 1.17094 0.80661 0.77220 0.86997 1.90841 1.75246 1.59975 1.18733 1.24606 1.02691 1.14350 0.98574 1.20776 0.92636 0.95450 1.00407 1.18751 0.99971 1.02045 0.90613 1.20729 0.92324 0.99441 1.03867 1.24571 1.02313 1.08045 1.00820 1.24602 0.86399 1.08049 0.95607 1.86570 1.22275 1.32001 1.93012 0.94625 0.87482 0.78447 0.77134 1.82556 1.17796 1.50727 0.96652 1.87969 1.73483 1.33874 1.34005 1.22906 0.94532 0.88129 1.01923 1.23522 0.97037 0.95129 1.01376 0.92113 0.91983 0.85293 0.88316 0.87234 0.88590 0.90454 0.75080 0.83678 0.91037 0.89138 0.91600 0.84321 0.76148 1.18824 1.19723 0.88409 0.93020 0.93658 0.88368 0.88490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.68 10.56 -51.36 -0.54 -1.22 16 3 C 0.47 1.46 7.49 71.23 0.53 1.99 16 4 O -0.54 -5.19 15.65 21.95 0.34 -4.85 16 5 C -0.11 0.36 3.91 -11.02 -0.04 0.32 16 6 H 0.15 -1.14 7.61 -2.39 -0.02 -1.16 16 7 C -0.10 0.46 7.05 31.12 0.22 0.68 16 8 C 0.08 -0.32 0.89 -10.28 -0.01 -0.33 16 9 C 0.11 -0.33 4.34 86.38 0.37 0.05 16 10 N -0.71 0.98 5.47 -467.14 -2.56 -1.57 16 11 C 0.59 2.73 7.78 86.42 0.67 3.40 16 12 O -0.57 -6.93 16.84 -4.36 -0.07 -7.01 16 13 C -0.28 -0.63 6.45 24.08 0.16 -0.47 16 14 C -0.06 -0.19 9.78 21.72 0.21 0.02 16 15 C -0.10 -0.08 5.75 -21.05 -0.12 -0.20 16 16 C -0.11 0.06 9.74 71.23 0.69 0.76 16 17 C -0.24 0.47 5.61 24.68 0.14 0.61 16 18 C -0.04 0.14 2.68 71.24 0.19 0.33 16 19 O -0.53 1.03 10.27 -148.98 -1.53 -0.50 16 20 Si 0.72 -3.37 30.97 68.60 2.12 -1.25 16 21 S 0.25 -0.94 19.34 -56.49 -1.09 -2.03 16 22 O -0.37 0.55 10.23 -148.98 -1.52 -0.97 16 23 C 0.02 -0.08 10.40 113.37 1.18 1.10 16 24 C -0.13 0.37 6.28 31.11 0.20 0.56 16 25 H 0.06 -0.05 8.13 -2.39 -0.02 -0.07 16 26 H 0.06 -0.07 8.13 -2.38 -0.02 -0.09 16 27 H 0.13 -0.93 8.14 -2.39 -0.02 -0.95 16 28 H 0.10 -0.32 8.10 -2.39 -0.02 -0.34 16 29 H 0.11 -0.84 8.10 -2.38 -0.02 -0.86 16 30 H 0.10 -0.33 7.31 -2.38 -0.02 -0.35 16 31 H 0.08 -0.14 7.29 -2.38 -0.02 -0.16 16 32 H 0.41 -1.84 7.31 -92.71 -0.68 -2.52 16 33 H 0.15 0.62 8.06 -2.91 -0.02 0.60 16 34 H 0.07 -0.07 8.14 -2.38 -0.02 -0.09 16 35 H 0.09 -0.05 5.55 -2.39 -0.01 -0.06 16 36 H 0.06 -0.06 8.10 -2.39 -0.02 -0.08 16 37 H 0.14 -0.81 7.96 -2.39 -0.02 -0.83 16 38 H 0.39 -2.65 8.70 -74.06 -0.64 -3.30 16 39 H -0.26 0.25 7.11 99.48 0.71 0.96 16 40 H -0.27 -0.52 7.11 99.48 0.71 0.19 16 41 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 42 H 0.05 -0.23 7.72 -2.39 -0.02 -0.25 16 43 H 0.04 -0.16 7.10 -2.39 -0.02 -0.18 16 44 H 0.10 -0.50 8.10 -2.39 -0.02 -0.52 16 45 H 0.10 0.13 7.44 -2.39 -0.02 0.11 16 Total: 0.00 -20.42 387.37 0.50 -19.93 By element: Atomic # 1 Polarization: -10.24 SS G_CDS: -0.24 Total: -10.49 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 5.59 Total: 9.97 kcal Atomic # 7 Polarization: 0.98 SS G_CDS: -2.56 Total: -1.57 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -3.33 Total: -14.55 kcal Atomic # 14 Polarization: -3.37 SS G_CDS: 2.12 Total: -1.25 kcal Atomic # 16 Polarization: -0.94 SS G_CDS: -1.09 Total: -2.03 kcal Total: -20.42 0.50 -19.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15102698_6739946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.667 kcal (2) G-P(sol) polarization free energy of solvation -20.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds