Wall clock time and date at job start Sun Mar 7 2021 01:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34233 * 117.00093 * 2 1 4 4 O 1.20824 * 119.99856 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00207 * 180.02562 * 3 2 1 6 6 H 1.08994 * 112.85226 * 48.80038 * 5 3 2 7 7 C 1.53785 * 113.61283 * 180.02562 * 5 3 2 8 8 C 1.53786 * 87.08056 * 139.97584 * 7 5 3 9 9 C 1.53003 * 113.61306 * 89.11575 * 8 7 5 10 10 N 1.46493 * 109.47432 * 59.97092 * 9 8 7 11 11 C 1.34776 * 120.00338 * 185.08493 * 10 9 8 12 12 O 1.21285 * 119.99731 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99963 * 180.02562 * 11 10 9 14 14 N 1.46503 * 109.46656 * 180.02562 * 13 11 10 15 15 C 1.36835 * 125.06677 * 264.69353 * 14 13 11 16 16 C 1.34232 * 109.94245 * 179.85340 * 15 14 13 17 17 C 1.50695 * 126.50110 * 180.13304 * 16 15 14 18 18 O 1.42894 * 109.47376 * 255.31571 * 17 16 15 19 19 Si 1.86301 * 109.47194 * 15.32305 * 17 16 15 20 20 C 1.46492 * 106.99605 * 0.40407 * 16 15 14 21 21 C 1.39591 * 134.03701 * 179.73230 * 20 16 15 22 22 C 1.36658 * 119.76685 * 180.02562 * 21 20 16 23 23 C 1.38791 * 120.52867 * 359.97438 * 22 21 20 24 24 C 1.37784 * 120.66485 * 359.97438 * 23 22 21 25 25 C 1.37691 * 125.06013 * 85.00935 * 14 13 11 26 26 O 1.42895 * 113.61202 * 220.01708 * 8 7 5 27 27 C 1.42911 * 113.99655 * 174.60784 * 26 8 7 28 28 C 1.53782 * 113.60947 * 277.49490 * 5 3 2 29 29 H 1.09003 * 109.46827 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47232 * 299.99952 * 1 2 3 31 31 H 1.08997 * 109.47013 * 60.00132 * 1 2 3 32 32 H 1.09000 * 113.61173 * 254.52040 * 7 5 3 33 33 H 1.08995 * 113.61553 * 25.43124 * 7 5 3 34 34 H 1.08992 * 109.46963 * 179.97438 * 9 8 7 35 35 H 1.09002 * 109.46838 * 299.97030 * 9 8 7 36 36 H 0.97006 * 119.99538 * 5.09161 * 10 9 8 37 37 H 1.08995 * 109.47365 * 300.00327 * 13 11 10 38 38 H 1.09004 * 109.46882 * 60.00944 * 13 11 10 39 39 H 1.08002 * 125.02528 * 0.02562 * 15 14 13 40 40 H 1.09007 * 109.46775 * 135.32198 * 17 16 15 41 41 H 0.96704 * 113.99969 * 60.00647 * 18 17 16 42 42 H 1.48497 * 110.00023 * 58.67517 * 19 17 16 43 43 H 1.48495 * 109.99888 * 179.97438 * 19 17 16 44 44 H 1.08005 * 120.11557 * 359.97438 * 21 20 16 45 45 H 1.08005 * 119.73563 * 180.02562 * 22 21 20 46 46 H 1.08003 * 119.66576 * 180.02562 * 23 22 21 47 47 H 1.08000 * 120.10856 * 180.02562 * 24 23 22 48 48 H 1.09004 * 109.46401 * 185.97671 * 27 26 8 49 49 H 1.08992 * 109.46800 * 305.98033 * 27 26 8 50 50 H 1.09000 * 109.46823 * 65.97835 * 27 26 8 51 51 H 1.08999 * 113.61896 * 334.56507 * 28 5 3 52 52 H 1.08993 * 113.61684 * 105.39020 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 1 4.0234 0.6366 -0.7566 7 6 4.1077 2.7143 0.0001 8 6 5.1814 2.2263 0.9871 9 6 6.4442 1.6953 0.3057 10 7 7.0452 2.7573 -0.5049 11 6 8.1142 2.4897 -1.2808 12 8 8.5785 1.3696 -1.3082 13 6 8.7327 3.5824 -2.1142 14 7 9.8706 3.0415 -2.8619 15 6 11.1770 3.1047 -2.4598 16 6 11.9655 2.5129 -3.3708 17 6 13.4639 2.3685 -3.3008 18 8 14.0744 3.2979 -4.1983 19 14 14.0405 2.7127 -1.5631 20 6 11.0938 2.0397 -4.4489 21 6 11.3159 1.3669 -5.6516 22 6 10.2596 1.0602 -6.4625 23 6 8.9669 1.4120 -6.0998 24 6 8.7250 2.0756 -4.9167 25 6 9.7853 2.3991 -4.0768 26 8 5.4637 3.1584 2.0327 27 6 6.3695 2.6654 3.0220 28 6 4.1916 1.1233 1.3962 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.5105 3.0297 -0.9624 33 1 3.4174 3.4402 0.4297 34 1 7.1565 1.3697 1.0637 35 1 6.1844 0.8523 -0.3346 36 1 6.6736 3.6531 -0.4832 37 1 7.9912 3.9708 -2.8124 38 1 9.0748 4.3867 -1.4629 39 1 11.5222 3.5607 -1.5437 40 1 13.7446 1.3536 -3.5825 41 1 13.8677 4.2231 -4.0070 42 1 13.3882 1.7732 -0.6160 43 1 15.5166 2.5730 -1.4807 44 1 12.3191 1.0903 -5.9406 45 1 10.4319 0.5392 -7.3928 46 1 8.1423 1.1624 -6.7510 47 1 7.7154 2.3447 -4.6431 48 1 6.4498 3.3886 3.8336 49 1 5.9987 1.7185 3.4143 50 1 7.3507 2.5131 2.5725 51 1 3.5242 1.4146 2.2073 52 1 4.6608 0.1536 1.5617 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15102698_9818708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:06:01 Heat of formation + Delta-G solvation = -89.078520 kcal Electronic energy + Delta-G solvation = -36502.412495 eV Core-core repulsion = 31629.131183 eV Total energy + Delta-G solvation = -4873.281312 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.176 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.54440 -42.24048 -41.00631 -40.11432 -38.09104 -37.76089 -37.59829 -36.89168 -35.51989 -34.05401 -31.58403 -30.24563 -30.12232 -29.23016 -28.08388 -28.02575 -26.82870 -25.84944 -25.20638 -23.71167 -22.68373 -22.11664 -21.62446 -20.67571 -20.16133 -19.29964 -18.62814 -18.42704 -18.16904 -17.72003 -17.55122 -17.33973 -16.87131 -16.75737 -16.43419 -16.40285 -16.25807 -16.00049 -15.87304 -15.61372 -15.34227 -15.17731 -14.80563 -14.70520 -14.55840 -14.36450 -14.35549 -14.05343 -13.87896 -13.64850 -13.56528 -13.28910 -13.10037 -13.06015 -12.74558 -12.70327 -12.59728 -12.56292 -12.25815 -12.11613 -12.07336 -11.88714 -11.81066 -11.64469 -11.44880 -11.23330 -10.67379 -10.52641 -10.30238 -10.25067 -9.14766 -8.61570 -5.04787 0.15251 0.63920 1.00573 1.34659 1.41988 1.45277 1.62541 1.64685 1.75709 2.00405 2.12137 2.70374 2.95413 3.12630 3.17839 3.31640 3.42638 3.60398 3.67894 3.70494 3.76673 3.85750 3.89299 4.05521 4.06518 4.19178 4.21025 4.22851 4.23297 4.26130 4.31125 4.40762 4.48122 4.48845 4.55342 4.56579 4.57176 4.60871 4.66576 4.72495 4.79428 4.80508 4.82704 4.89203 4.90435 5.03772 5.14167 5.23135 5.29053 5.51270 5.66719 5.73995 5.76230 6.09783 6.20111 6.23826 6.43976 6.59600 6.89579 7.08984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.471 3.529 4 O -0.535 6.535 5 C -0.108 4.108 6 H 0.148 0.852 7 C -0.096 4.096 8 C 0.087 3.913 9 C 0.115 3.885 10 N -0.708 5.708 11 C 0.494 3.506 12 O -0.570 6.570 13 C 0.087 3.913 14 N -0.466 5.466 15 C 0.080 3.920 16 C -0.226 4.226 17 C -0.041 4.041 18 O -0.561 6.561 19 Si 0.801 3.199 20 C -0.117 4.117 21 C -0.092 4.092 22 C -0.154 4.154 23 C -0.109 4.109 24 C -0.132 4.132 25 C 0.091 3.909 26 O -0.375 6.375 27 C 0.021 3.979 28 C -0.133 4.133 29 H 0.128 0.872 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.420 0.580 37 H 0.145 0.855 38 H 0.167 0.833 39 H 0.208 0.792 40 H 0.088 0.912 41 H 0.393 0.607 42 H -0.293 1.293 43 H -0.299 1.299 44 H 0.115 0.885 45 H 0.134 0.866 46 H 0.145 0.855 47 H 0.135 0.865 48 H 0.096 0.904 49 H 0.050 0.950 50 H 0.049 0.951 51 H 0.095 0.905 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.650 4.561 3.944 7.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.315 3.685 4 O -0.424 6.424 5 C -0.127 4.127 6 H 0.166 0.834 7 C -0.134 4.134 8 C 0.047 3.953 9 C -0.009 4.009 10 N -0.362 5.362 11 C 0.279 3.721 12 O -0.448 6.448 13 C -0.037 4.037 14 N -0.148 5.148 15 C -0.045 4.045 16 C -0.233 4.233 17 C -0.151 4.151 18 O -0.368 6.368 19 Si 0.707 3.293 20 C -0.122 4.122 21 C -0.110 4.110 22 C -0.173 4.173 23 C -0.128 4.128 24 C -0.152 4.152 25 C -0.014 4.014 26 O -0.294 6.294 27 C -0.075 4.075 28 C -0.171 4.171 29 H 0.146 0.854 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.258 0.742 37 H 0.162 0.838 38 H 0.185 0.815 39 H 0.225 0.775 40 H 0.105 0.895 41 H 0.243 0.757 42 H -0.221 1.221 43 H -0.227 1.227 44 H 0.133 0.867 45 H 0.152 0.848 46 H 0.163 0.837 47 H 0.153 0.847 48 H 0.115 0.885 49 H 0.069 0.931 50 H 0.067 0.933 51 H 0.113 0.887 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.266 3.516 4.572 6.628 hybrid contribution -0.574 -0.790 -0.460 1.080 sum -3.840 2.726 4.112 6.252 Atomic orbital electron populations 1.23537 0.74944 1.05637 1.02511 1.86517 1.24835 1.33114 1.83481 1.23899 0.92418 0.81061 0.71100 1.90679 1.67834 1.37364 1.46531 1.22436 0.86303 1.01638 1.02299 0.83411 1.23029 0.95756 0.94617 0.99971 1.22906 0.92249 0.90942 0.89192 1.21565 0.93472 0.90990 0.94871 1.45688 1.31130 1.14605 1.44736 1.21443 0.80303 0.90104 0.80202 1.90820 1.62756 1.25040 1.66228 1.22002 0.89406 0.95010 0.97293 1.43432 1.06166 1.49172 1.16029 1.22066 0.81796 1.00907 0.99734 1.20780 0.95636 1.09846 0.97056 1.24576 0.88952 0.94840 1.06702 1.86452 1.72818 1.20454 1.57119 0.94136 0.76398 0.87457 0.71333 1.19364 0.92960 1.03250 0.96589 1.20437 0.99380 0.97975 0.93238 1.20905 0.92761 1.02816 1.00832 1.21124 0.97413 0.98035 0.96216 1.20256 0.97113 1.03048 0.94800 1.18385 0.95425 0.99390 0.88190 1.88008 1.65668 1.40173 1.35580 1.22920 0.92472 1.00782 0.91353 1.23495 0.97668 1.01103 0.94863 0.85382 0.91999 0.91944 0.87689 0.88555 0.90787 0.89725 0.74202 0.83754 0.81521 0.77527 0.89489 0.75693 1.22085 1.22688 0.86702 0.84777 0.83719 0.84699 0.88550 0.93087 0.93265 0.88662 0.87784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.67 10.57 -51.44 -0.54 -1.22 16 3 C 0.47 1.18 7.48 71.24 0.53 1.71 16 4 O -0.53 -4.65 15.65 21.97 0.34 -4.31 16 5 C -0.11 0.46 3.91 -11.01 -0.04 0.41 16 6 H 0.15 -1.15 7.66 -2.39 -0.02 -1.16 16 7 C -0.10 0.49 6.57 31.12 0.20 0.70 16 8 C 0.09 -0.53 0.88 -10.28 -0.01 -0.53 16 9 C 0.12 -0.66 4.81 86.38 0.42 -0.25 16 10 N -0.71 5.64 5.12 -463.07 -2.37 3.27 16 11 C 0.49 -1.40 7.90 87.66 0.69 -0.71 16 12 O -0.57 -4.98 16.42 -3.05 -0.05 -5.03 16 13 C 0.09 -0.76 6.48 85.63 0.56 -0.20 16 14 N -0.47 -0.14 2.27 -519.98 -1.18 -1.31 16 15 C 0.08 -0.03 9.89 83.00 0.82 0.79 16 16 C -0.23 -1.17 5.57 -18.63 -0.10 -1.28 16 17 C -0.04 -0.16 3.06 71.23 0.22 0.06 16 18 O -0.56 -2.26 12.88 -148.98 -1.92 -4.18 16 19 Si 0.80 -0.62 30.76 68.60 2.11 1.49 16 20 C -0.12 -1.14 6.35 -20.20 -0.13 -1.27 16 21 C -0.09 -0.91 10.05 22.23 0.22 -0.69 16 22 C -0.15 -1.06 9.97 22.03 0.22 -0.84 16 23 C -0.11 -0.50 10.01 22.29 0.22 -0.28 16 24 C -0.13 -0.59 10.00 22.37 0.22 -0.37 16 25 C 0.09 0.59 6.80 39.03 0.27 0.85 16 26 O -0.38 1.24 10.65 -148.98 -1.59 -0.35 16 27 C 0.02 -0.13 10.32 113.37 1.17 1.04 16 28 C -0.13 0.73 6.60 31.11 0.21 0.94 16 29 H 0.13 -0.92 8.14 -2.39 -0.02 -0.94 16 30 H 0.06 -0.08 8.13 -2.39 -0.02 -0.10 16 31 H 0.06 -0.08 8.13 -2.39 -0.02 -0.10 16 32 H 0.10 -0.92 7.54 -2.39 -0.02 -0.93 16 33 H 0.10 -0.07 7.44 -2.39 -0.02 -0.09 16 34 H 0.07 -0.29 6.38 -2.39 -0.02 -0.31 16 35 H 0.08 -0.39 7.34 -2.39 -0.02 -0.40 16 36 H 0.42 -5.44 8.10 -92.70 -0.75 -6.19 16 37 H 0.14 -1.95 8.14 -2.39 -0.02 -1.97 16 38 H 0.17 -2.85 8.12 -2.38 -0.02 -2.87 16 39 H 0.21 -1.91 6.35 -2.91 -0.02 -1.93 16 40 H 0.09 0.67 7.96 -2.38 -0.02 0.65 16 41 H 0.39 -2.03 8.70 -74.05 -0.64 -2.67 16 42 H -0.29 -1.59 7.11 99.48 0.71 -0.88 16 43 H -0.30 -1.93 7.11 99.48 0.71 -1.22 16 44 H 0.11 1.08 8.06 -2.91 -0.02 1.06 16 45 H 0.13 0.40 8.06 -2.91 -0.02 0.37 16 46 H 0.15 -0.07 8.06 -2.91 -0.02 -0.09 16 47 H 0.14 -0.11 8.06 -2.91 -0.02 -0.13 16 48 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 49 H 0.05 -0.35 7.82 -2.39 -0.02 -0.37 16 50 H 0.05 -0.33 6.73 -2.39 -0.02 -0.34 16 51 H 0.09 -0.31 8.09 -2.39 -0.02 -0.33 16 52 H 0.10 -0.84 8.10 -2.39 -0.02 -0.86 16 Total: 0.00 -34.22 434.98 1.30 -32.92 By element: Atomic # 1 Polarization: -22.14 SS G_CDS: -0.39 Total: -22.53 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 6.88 Total: 1.24 kcal Atomic # 7 Polarization: 5.50 SS G_CDS: -3.55 Total: 1.96 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -3.76 Total: -15.07 kcal Atomic # 14 Polarization: -0.62 SS G_CDS: 2.11 Total: 1.49 kcal Total: -34.22 1.30 -32.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15102698_9818708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.159 kcal (2) G-P(sol) polarization free energy of solvation -34.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds