Wall clock time and date at job start Sun Mar 7 2021 03:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34706 * 116.99962 * 2 1 4 4 O 1.21470 * 120.00048 * 359.97438 * 3 2 1 5 5 C 1.47731 * 119.99959 * 180.02562 * 3 2 1 6 6 C 1.39609 * 120.14876 * 178.05356 * 5 3 2 7 7 C 1.50709 * 120.07697 * 359.94860 * 6 5 3 8 8 H 1.08997 * 112.84355 * 21.66326 * 7 6 5 9 9 C 1.53783 * 113.68802 * 152.92599 * 7 6 5 10 10 C 1.53780 * 87.07583 * 139.99560 * 9 7 6 11 11 H 1.09000 * 113.68871 * 220.00889 * 10 9 7 12 12 N 1.46503 * 113.61621 * 89.11745 * 10 9 7 13 13 C 1.34775 * 120.00166 * 107.49890 * 12 10 9 14 14 O 1.21582 * 119.99602 * 359.97438 * 13 12 10 15 15 C 1.47664 * 120.00190 * 180.02562 * 13 12 10 16 16 C 1.40006 * 120.45282 * 4.24471 * 15 13 12 17 17 N 1.31304 * 121.37375 * 180.02562 * 16 15 13 18 18 C 1.32818 * 121.89525 * 359.96434 * 17 16 15 19 19 N 1.37154 * 132.97068 * 180.02562 * 18 17 16 20 20 C 1.36945 * 110.11735 * 179.97438 * 19 18 17 21 21 C 1.34170 * 109.95224 * 359.97438 * 20 19 18 22 22 C 1.50698 * 126.60231 * 180.02562 * 21 20 19 23 23 O 1.42904 * 109.46970 * 255.00005 * 22 21 20 24 24 Si 1.86300 * 109.46976 * 14.99644 * 22 21 20 25 25 C 1.41016 * 120.08226 * 359.97438 * 18 17 16 26 26 C 1.39287 * 119.62069 * 0.02562 * 25 18 17 27 27 C 1.50698 * 121.03202 * 179.73044 * 26 25 18 28 28 C 1.53775 * 113.61739 * 250.46442 * 7 6 5 29 29 C 1.37964 * 119.85001 * 180.22995 * 6 5 3 30 30 C 1.38348 * 120.14636 * 359.49471 * 29 6 5 31 31 C 1.38390 * 120.30319 * 0.50333 * 30 29 6 32 32 C 1.37928 * 120.14921 * 359.74960 * 31 30 29 33 33 H 1.09001 * 109.46789 * 299.99649 * 1 2 3 34 34 H 1.08995 * 109.47450 * 59.99678 * 1 2 3 35 35 H 1.08998 * 109.47306 * 179.97438 * 1 2 3 36 36 H 1.09000 * 113.61496 * 25.44892 * 9 7 6 37 37 H 1.08994 * 113.61617 * 254.54323 * 9 7 6 38 38 H 0.96996 * 119.99968 * 287.50292 * 12 10 9 39 39 H 1.08000 * 119.31057 * 359.97438 * 16 15 13 40 40 H 0.97005 * 124.93710 * 0.02562 * 19 18 17 41 41 H 1.08003 * 125.01987 * 180.02562 * 20 19 18 42 42 H 1.08996 * 109.47474 * 135.00023 * 22 21 20 43 43 H 0.96699 * 113.99992 * 59.99909 * 23 22 21 44 44 H 1.48497 * 109.99813 * 58.68561 * 24 22 21 45 45 H 1.48505 * 110.00034 * 180.02562 * 24 22 21 46 46 H 1.08993 * 109.47176 * 97.44695 * 27 26 25 47 47 H 1.09003 * 109.46565 * 217.44417 * 27 26 25 48 48 H 1.08994 * 109.47160 * 337.44382 * 27 26 25 49 49 H 1.09005 * 113.61412 * 105.38532 * 28 7 6 50 50 H 1.09000 * 113.61479 * 334.48313 * 28 7 6 51 51 H 1.07997 * 119.92954 * 179.74413 * 29 6 5 52 52 H 1.07995 * 119.85006 * 180.23925 * 30 29 6 53 53 H 1.07995 * 119.92703 * 179.77399 * 31 30 29 54 54 H 1.08001 * 120.07659 * 180.02562 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.1759 2.5191 -0.0416 7 6 3.3601 3.7855 -0.0866 8 1 2.3453 3.6487 0.2869 9 6 4.0786 5.0050 0.5147 10 6 3.4851 5.8262 -0.6422 11 1 4.1762 6.5590 -1.0587 12 7 2.1671 6.3922 -0.3445 13 6 2.0359 7.7153 -0.1244 14 8 3.0116 8.4392 -0.1725 15 6 0.7075 8.2857 0.1762 16 6 -0.4067 7.4507 0.3224 17 7 -1.5962 7.9385 0.5893 18 6 -1.8037 9.2423 0.7344 19 7 -2.9229 9.9860 1.0089 20 6 -2.6041 11.3170 1.0560 21 6 -1.2938 11.4827 0.8193 22 6 -0.5455 12.7902 0.7830 23 8 -0.2568 13.1363 -0.5731 24 14 -1.5903 14.1252 1.5556 25 6 -0.7305 10.1477 0.6030 26 6 0.5456 9.6664 0.3202 27 6 1.7139 10.6058 0.1672 28 6 3.4257 4.5128 -1.4399 29 6 5.5540 2.5840 -0.0467 30 6 6.3044 1.4226 -0.0007 31 6 5.6794 0.1886 0.0402 32 6 4.3024 0.1091 0.0405 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 -0.3634 -1.0276 -0.0005 36 1 5.1656 4.9302 0.4843 37 1 3.7005 5.2951 1.4949 38 1 1.3888 5.8146 -0.3058 39 1 -0.2854 6.3832 0.2126 40 1 -3.8109 9.6221 1.1500 41 1 -3.3038 12.1153 1.2551 42 1 0.3867 12.6910 1.3390 43 1 -1.0418 13.2413 -1.1279 44 1 -1.9241 13.7621 2.9563 45 1 -0.8638 15.4201 1.5254 46 1 2.2681 10.6520 1.1046 47 1 2.3695 10.2442 -0.6250 48 1 1.3493 11.6005 -0.0887 49 1 2.5204 4.4055 -2.0376 50 1 4.3342 4.3034 -2.0046 51 1 6.0481 3.5436 -0.0825 52 1 7.3829 1.4791 -0.0010 53 1 6.2711 -0.7142 0.0722 54 1 3.8159 -0.8545 0.0728 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15105874_12890568.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:25:57 Heat of formation + Delta-G solvation = -3.211678 kcal Electronic energy + Delta-G solvation = -40358.747516 eV Core-core repulsion = 35229.541389 eV Total energy + Delta-G solvation = -5129.206127 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 422.172 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -42.88636 -42.09141 -41.24552 -40.27114 -39.09395 -38.52027 -37.71389 -37.53840 -35.22671 -34.62155 -32.59990 -32.12517 -31.84533 -30.77996 -28.94602 -28.71467 -26.75821 -26.70006 -26.19342 -24.86492 -24.71737 -24.04991 -22.93210 -22.06328 -21.87925 -20.65987 -20.24138 -19.38117 -19.02015 -18.76976 -18.10538 -17.68721 -17.50949 -17.41408 -17.28473 -16.88545 -16.69443 -16.46119 -16.20058 -16.04681 -15.64364 -15.58382 -15.52487 -15.26352 -15.19222 -14.86954 -14.62830 -14.56102 -14.26410 -14.09060 -14.04085 -13.82978 -13.78374 -13.66223 -13.45880 -13.29861 -13.19832 -13.14534 -13.07524 -12.88841 -12.51122 -12.32992 -12.28681 -12.04124 -11.84568 -11.73033 -11.39153 -11.21160 -11.16971 -10.71126 -10.59284 -10.22474 -10.15911 -10.04992 -9.73183 -9.65708 -9.13240 -4.98418 -0.39088 -0.34657 -0.12422 0.33674 1.35395 1.42228 1.47501 1.63723 1.67184 1.73191 1.76298 1.99070 2.05935 2.70583 2.72807 3.26576 3.42184 3.46770 3.56965 3.58776 3.61547 3.66074 3.68467 3.72313 3.74286 3.88249 3.97794 4.12921 4.14517 4.19120 4.26036 4.27976 4.29521 4.31508 4.39037 4.43831 4.44597 4.55990 4.62469 4.65309 4.68949 4.72385 4.74339 4.80771 4.83326 4.90949 4.98447 4.99048 5.02764 5.09494 5.17498 5.24170 5.30518 5.31865 5.36484 5.47655 5.49825 5.71197 5.75345 5.88584 6.20889 6.40588 6.65448 6.79479 6.88737 7.09921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.507 3.493 4 O -0.518 6.518 5 C -0.152 4.152 6 C -0.013 4.013 7 C -0.104 4.104 8 H 0.132 0.868 9 C -0.142 4.142 10 C 0.121 3.879 11 H 0.096 0.904 12 N -0.698 5.698 13 C 0.573 3.427 14 O -0.562 6.562 15 C -0.241 4.241 16 C 0.177 3.823 17 N -0.515 5.515 18 C 0.287 3.713 19 N -0.559 5.559 20 C 0.098 3.902 21 C -0.206 4.206 22 C -0.050 4.050 23 O -0.557 6.557 24 Si 0.806 3.194 25 C -0.166 4.166 26 C 0.061 3.939 27 C -0.121 4.121 28 C -0.119 4.119 29 C -0.139 4.139 30 C -0.076 4.076 31 C -0.141 4.141 32 C -0.065 4.065 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.128 0.872 36 H 0.108 0.892 37 H 0.063 0.937 38 H 0.409 0.591 39 H 0.184 0.816 40 H 0.439 0.561 41 H 0.233 0.767 42 H 0.094 0.906 43 H 0.395 0.605 44 H -0.281 1.281 45 H -0.304 1.304 46 H 0.071 0.929 47 H 0.082 0.918 48 H 0.085 0.915 49 H 0.074 0.926 50 H 0.106 0.894 51 H 0.149 0.851 52 H 0.154 0.846 53 H 0.153 0.847 54 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.578 -2.991 -0.646 5.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.277 6.277 3 C 0.354 3.646 4 O -0.410 6.410 5 C -0.154 4.154 6 C -0.014 4.014 7 C -0.121 4.121 8 H 0.149 0.851 9 C -0.180 4.180 10 C 0.016 3.984 11 H 0.114 0.886 12 N -0.349 5.349 13 C 0.362 3.638 14 O -0.442 6.442 15 C -0.248 4.248 16 C 0.009 3.991 17 N -0.228 5.228 18 C 0.053 3.947 19 N -0.166 5.166 20 C -0.029 4.029 21 C -0.213 4.213 22 C -0.159 4.159 23 O -0.366 6.366 24 Si 0.710 3.290 25 C -0.173 4.173 26 C 0.053 3.947 27 C -0.177 4.177 28 C -0.157 4.157 29 C -0.156 4.156 30 C -0.094 4.094 31 C -0.159 4.159 32 C -0.083 4.083 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.146 0.854 36 H 0.126 0.874 37 H 0.082 0.918 38 H 0.247 0.753 39 H 0.201 0.799 40 H 0.281 0.719 41 H 0.250 0.750 42 H 0.112 0.888 43 H 0.245 0.755 44 H -0.208 1.208 45 H -0.233 1.233 46 H 0.090 0.910 47 H 0.101 0.899 48 H 0.104 0.896 49 H 0.093 0.907 50 H 0.124 0.876 51 H 0.167 0.833 52 H 0.172 0.828 53 H 0.171 0.829 54 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.503 -2.195 0.281 5.017 hybrid contribution 0.372 -0.638 0.172 0.758 sum -4.131 -2.833 0.453 5.030 Atomic orbital electron populations 1.23549 0.74335 1.05698 1.02705 1.86542 1.25151 1.32185 1.83830 1.21551 0.89652 0.81446 0.71908 1.90591 1.67351 1.35507 1.47532 1.19077 0.88662 0.95416 1.12196 1.19935 0.94400 0.92923 0.94110 1.22439 1.01616 0.89909 0.98164 0.85072 1.23605 1.01532 0.94696 0.98168 1.21814 0.84660 0.94839 0.97090 0.88570 1.45509 1.10943 1.07192 1.71304 1.17989 0.87751 0.82228 0.75860 1.90731 1.40694 1.59721 1.53091 1.20483 0.95215 0.94462 1.14646 1.22834 0.84900 1.00187 0.91215 1.66488 1.25531 1.12270 1.18547 1.18788 0.87944 0.89042 0.98919 1.41627 1.09428 1.05338 1.60229 1.22426 0.95990 0.84940 0.99497 1.20814 0.94328 0.93217 1.12978 1.24755 1.03944 0.98131 0.89072 1.86475 1.37990 1.91606 1.20481 0.94048 0.83513 0.72767 0.78653 1.19800 0.92914 0.95600 1.08955 1.20065 0.94178 0.92899 0.87590 1.21089 0.94939 0.98466 1.03162 1.23268 1.03870 0.92908 0.95688 1.21307 0.92238 1.00339 1.01751 1.21833 1.01817 0.91944 0.93782 1.21509 0.94044 0.99397 1.00911 1.21658 0.94678 0.97748 0.94198 0.91800 0.91686 0.85352 0.87415 0.91850 0.75316 0.79907 0.71934 0.75048 0.88819 0.75520 1.20800 1.23252 0.91029 0.89941 0.89603 0.90732 0.87587 0.83331 0.82805 0.82884 0.83693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -1.23 9.82 -56.16 -0.55 -1.78 16 3 C 0.51 2.95 7.88 70.33 0.55 3.50 16 4 O -0.52 -4.25 12.86 19.93 0.26 -3.99 16 5 C -0.15 -0.56 5.87 -20.10 -0.12 -0.68 16 6 C -0.01 -0.03 5.30 -19.60 -0.10 -0.13 16 7 C -0.10 -0.24 3.17 -11.01 -0.03 -0.27 16 8 H 0.13 0.73 4.81 -19.62 -0.09 0.64 16 9 C -0.14 -0.23 7.23 31.12 0.22 -0.01 16 10 C 0.12 0.37 4.32 45.51 0.20 0.57 16 11 H 0.10 0.53 7.46 -2.39 -0.02 0.52 16 12 N -0.70 -2.93 5.22 -443.08 -2.31 -5.24 16 13 C 0.57 5.61 7.73 86.73 0.67 6.29 16 14 O -0.56 -8.80 13.08 -3.98 -0.05 -8.85 16 15 C -0.24 -2.17 5.89 -19.99 -0.12 -2.29 16 16 C 0.18 1.06 10.68 85.20 0.91 1.97 16 17 N -0.52 -3.99 10.37 -191.76 -1.99 -5.98 16 18 C 0.29 1.74 8.42 134.02 1.13 2.87 16 19 N -0.56 1.37 6.04 -192.26 -1.16 0.21 16 20 C 0.10 -0.57 10.44 82.97 0.87 0.30 16 21 C -0.21 -0.18 5.57 -18.64 -0.10 -0.28 16 22 C -0.05 0.00 1.87 71.24 0.13 0.13 16 23 O -0.56 -0.49 11.67 -148.98 -1.74 -2.23 16 24 Si 0.81 -3.92 30.77 68.60 2.11 -1.81 16 25 C -0.17 -1.24 6.16 -20.19 -0.12 -1.37 16 26 C 0.06 0.64 5.98 -19.25 -0.12 0.52 16 27 C -0.12 -1.30 8.47 71.24 0.60 -0.70 16 28 C -0.12 -0.08 7.34 31.12 0.23 0.15 16 29 C -0.14 0.18 9.12 22.23 0.20 0.39 16 30 C -0.08 0.26 10.04 22.33 0.22 0.48 16 31 C -0.14 0.40 10.03 22.23 0.22 0.63 16 32 C -0.06 -0.01 9.62 22.53 0.22 0.20 16 33 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 34 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 35 H 0.13 -0.91 8.14 -2.39 -0.02 -0.93 16 36 H 0.11 -0.15 5.90 -2.39 -0.01 -0.17 16 37 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.41 0.27 6.76 -92.71 -0.63 -0.35 16 39 H 0.18 -0.02 6.41 -2.91 -0.02 -0.04 16 40 H 0.44 -3.59 8.96 -92.70 -0.83 -4.42 16 41 H 0.23 -3.74 6.36 -2.91 -0.02 -3.76 16 42 H 0.09 0.35 7.12 -2.39 -0.02 0.33 16 43 H 0.39 -3.14 8.70 -74.06 -0.64 -3.79 16 44 H -0.28 0.12 7.11 99.48 0.71 0.83 16 45 H -0.30 -1.17 7.11 99.48 0.71 -0.46 16 46 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.08 1.15 5.98 -2.39 -0.01 1.14 16 48 H 0.09 0.83 4.73 -2.39 -0.01 0.82 16 49 H 0.07 0.11 8.14 -2.38 -0.02 0.09 16 50 H 0.11 -0.16 8.05 -2.39 -0.02 -0.18 16 51 H 0.15 -0.70 6.10 -2.91 -0.02 -0.72 16 52 H 0.15 -1.29 8.06 -2.91 -0.02 -1.31 16 53 H 0.15 -1.15 8.06 -2.91 -0.02 -1.17 16 54 H 0.15 -0.31 7.61 -2.91 -0.02 -0.33 16 Total: 0.00 -29.04 435.62 0.31 -28.73 By element: Atomic # 1 Polarization: -11.35 SS G_CDS: -1.12 Total: -12.46 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 6.86 Total: 13.41 kcal Atomic # 7 Polarization: -5.55 SS G_CDS: -5.46 Total: -11.00 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -2.09 Total: -16.85 kcal Atomic # 14 Polarization: -3.92 SS G_CDS: 2.11 Total: -1.81 kcal Total: -29.04 0.31 -28.73 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15105874_12890568.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.518 kcal (2) G-P(sol) polarization free energy of solvation -29.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds