Wall clock time and date at job start Sun Mar 7 2021 03:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34704 * 117.00224 * 2 1 4 4 O 1.21472 * 120.00017 * 0.02562 * 3 2 1 5 5 C 1.47728 * 120.00087 * 179.97438 * 3 2 1 6 6 C 1.39609 * 120.14676 * 186.39457 * 5 3 2 7 7 C 1.50694 * 120.07962 * 0.02562 * 6 5 3 8 8 H 1.08997 * 112.85373 * 18.97461 * 7 6 5 9 9 C 1.53957 * 113.74734 * 150.18671 * 7 6 5 10 10 C 1.53782 * 87.02014 * 139.93941 * 9 7 6 11 11 H 1.09003 * 113.61183 * 220.04906 * 10 9 7 12 12 N 1.46495 * 113.61257 * 89.23365 * 10 9 7 13 13 C 1.34780 * 120.00528 * 105.86065 * 12 10 9 14 14 O 1.21548 * 119.99583 * 359.97438 * 13 12 10 15 15 C 1.47837 * 120.00214 * 179.97438 * 13 12 10 16 16 C 1.39515 * 120.55917 * 359.97438 * 15 13 12 17 17 N 1.31702 * 120.56847 * 180.02562 * 16 15 13 18 18 C 1.31931 * 121.87600 * 0.02562 * 17 16 15 19 19 C 1.38352 * 121.08093 * 359.97438 * 18 17 16 20 20 C 1.50698 * 120.34770 * 180.02562 * 19 18 17 21 21 O 1.42908 * 109.46799 * 120.00623 * 20 19 18 22 22 Si 1.86295 * 109.47236 * 0.02562 * 20 19 18 23 23 C 1.38358 * 119.30270 * 359.72802 * 19 18 17 24 24 C 1.53777 * 87.17255 * 334.64086 * 10 9 7 25 25 C 1.37966 * 119.84484 * 179.72088 * 6 5 3 26 26 C 1.38349 * 120.15149 * 0.30361 * 25 6 5 27 27 C 1.38394 * 120.30227 * 359.97438 * 26 25 6 28 28 C 1.37925 * 120.14813 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.47655 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47118 * 299.99949 * 1 2 3 31 31 H 1.09004 * 109.47310 * 59.99971 * 1 2 3 32 32 H 1.09002 * 113.60683 * 25.42085 * 9 7 6 33 33 H 1.08999 * 113.66671 * 254.47214 * 9 7 6 34 34 H 0.97004 * 120.00137 * 285.85672 * 12 10 9 35 35 H 1.07997 * 119.71927 * 359.97438 * 16 15 13 36 36 H 1.08000 * 119.45581 * 179.97438 * 18 17 16 37 37 H 1.09000 * 109.47231 * 240.00232 * 20 19 18 38 38 H 0.96699 * 113.99799 * 180.02562 * 21 20 19 39 39 H 1.48498 * 109.99995 * 298.68108 * 22 20 19 40 40 H 1.48504 * 110.00126 * 59.99780 * 22 20 19 41 41 H 1.08001 * 120.85940 * 180.29169 * 23 19 18 42 42 H 1.09005 * 113.61537 * 139.94347 * 24 10 9 43 43 H 1.09004 * 113.61393 * 270.75456 * 24 10 9 44 44 H 1.08003 * 119.92911 * 180.27518 * 25 6 5 45 45 H 1.07991 * 119.85175 * 179.97438 * 26 25 6 46 46 H 1.07993 * 119.92640 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.07357 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5389 1.2775 0.0006 6 6 4.1762 2.5123 0.1350 7 6 3.3609 3.7712 0.2807 8 1 2.3350 3.5773 0.5937 9 6 4.0578 4.8693 1.1045 10 6 3.5010 5.8761 0.0841 11 1 4.2051 6.6655 -0.1792 12 7 2.1738 6.3901 0.4311 13 6 2.0388 7.6473 0.8978 14 8 3.0183 8.3545 1.0313 15 6 0.6993 8.1662 1.2475 16 6 -0.4329 7.3648 1.0984 17 7 -1.6263 7.8270 1.4093 18 6 -1.8014 9.0513 1.8686 19 6 -0.7294 9.9081 2.0449 20 6 -0.9483 11.3031 2.5712 21 8 -0.2222 11.4715 3.7905 22 14 -2.7646 11.5693 2.8887 23 6 0.5462 9.4685 1.7387 24 6 3.4681 4.7176 -0.9266 25 6 5.5544 2.5766 0.1406 26 6 6.3045 1.4218 0.0069 27 6 5.6791 0.1951 -0.1325 28 6 4.3021 0.1165 -0.1397 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 5.1453 4.7966 1.0973 33 1 3.6473 4.9913 2.1069 34 1 1.3921 5.8257 0.3250 35 1 -0.3301 6.3570 0.7240 36 1 -2.7977 9.3902 2.1110 37 1 -0.5975 12.0278 1.8364 38 1 -0.3174 12.3482 4.1870 39 1 -3.5275 11.4281 1.6225 40 1 -3.2546 10.5872 3.8891 41 1 1.4015 10.1146 1.8711 42 1 2.5822 4.7173 -1.5617 43 1 4.3936 4.6043 -1.4912 44 1 6.0489 3.5306 0.2490 45 1 7.3829 1.4778 0.0115 46 1 6.2705 -0.7024 -0.2368 47 1 3.8153 -0.8414 -0.2490 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15105874_13287814.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:26:46 Heat of formation + Delta-G solvation = -37.793706 kcal Electronic energy + Delta-G solvation = -32501.707576 eV Core-core repulsion = 28003.955290 eV Total energy + Delta-G solvation = -4497.752286 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.145 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.27275 -41.89722 -40.96672 -40.03342 -38.79602 -37.88161 -37.56728 -34.98478 -34.00067 -33.24338 -32.60284 -31.67590 -28.75535 -27.37827 -26.93109 -26.79205 -25.56040 -24.82409 -23.90325 -23.01338 -22.00483 -21.78723 -20.33049 -19.22058 -19.01859 -18.56416 -18.36615 -18.08026 -17.88566 -17.48045 -17.24379 -16.73682 -16.40851 -16.34097 -16.05905 -15.65294 -15.46207 -15.39393 -15.22896 -14.85197 -14.84835 -14.57876 -14.46148 -14.31418 -14.14295 -13.92516 -13.83809 -13.50383 -13.21814 -13.15297 -12.92321 -12.68053 -12.56317 -12.35699 -12.18878 -11.86857 -11.79697 -11.60018 -11.42111 -11.23451 -10.89050 -10.77593 -10.66904 -10.27879 -10.17814 -10.06670 -9.75355 -4.98714 -0.77807 -0.36327 -0.18519 0.31632 1.20991 1.44133 1.48305 1.62953 1.65243 1.80149 1.91319 2.43464 2.70054 2.87502 3.14413 3.34641 3.38303 3.51928 3.53502 3.56592 3.63694 3.66881 3.68317 3.85207 3.94285 3.98344 4.10609 4.12596 4.16163 4.25431 4.28716 4.36729 4.41715 4.42432 4.55773 4.65472 4.67570 4.69188 4.72878 4.78850 4.80599 4.87971 4.94617 4.99965 5.05783 5.12998 5.27272 5.29526 5.37729 5.46085 5.69502 5.86700 6.22515 6.42596 6.62095 6.84347 6.89325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.506 3.494 4 O -0.519 6.519 5 C -0.152 4.152 6 C -0.015 4.015 7 C -0.102 4.102 8 H 0.127 0.873 9 C -0.142 4.142 10 C 0.118 3.882 11 H 0.099 0.901 12 N -0.694 5.694 13 C 0.571 3.429 14 O -0.564 6.564 15 C -0.192 4.192 16 C 0.141 3.859 17 N -0.496 5.496 18 C 0.109 3.891 19 C -0.140 4.140 20 C -0.080 4.080 21 O -0.565 6.565 22 Si 0.782 3.218 23 C 0.005 3.995 24 C -0.117 4.117 25 C -0.137 4.137 26 C -0.076 4.076 27 C -0.140 4.140 28 C -0.065 4.065 29 H 0.128 0.872 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.062 0.938 34 H 0.412 0.588 35 H 0.188 0.812 36 H 0.160 0.840 37 H 0.103 0.897 38 H 0.408 0.592 39 H -0.279 1.279 40 H -0.291 1.291 41 H 0.151 0.849 42 H 0.076 0.924 43 H 0.109 0.891 44 H 0.150 0.850 45 H 0.155 0.845 46 H 0.154 0.846 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.732 -0.861 -0.855 1.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.277 6.277 3 C 0.353 3.647 4 O -0.411 6.411 5 C -0.153 4.153 6 C -0.015 4.015 7 C -0.119 4.119 8 H 0.145 0.855 9 C -0.180 4.180 10 C 0.013 3.987 11 H 0.117 0.883 12 N -0.345 5.345 13 C 0.357 3.643 14 O -0.444 6.444 15 C -0.197 4.197 16 C -0.018 4.018 17 N -0.203 5.203 18 C -0.047 4.047 19 C -0.142 4.142 20 C -0.190 4.190 21 O -0.375 6.375 22 Si 0.686 3.314 23 C -0.022 4.022 24 C -0.155 4.155 25 C -0.155 4.155 26 C -0.094 4.094 27 C -0.158 4.158 28 C -0.083 4.083 29 H 0.146 0.854 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.081 0.919 34 H 0.249 0.751 35 H 0.204 0.796 36 H 0.176 0.824 37 H 0.121 0.879 38 H 0.260 0.740 39 H -0.206 1.206 40 H -0.219 1.219 41 H 0.169 0.831 42 H 0.095 0.905 43 H 0.127 0.873 44 H 0.168 0.832 45 H 0.173 0.827 46 H 0.171 0.829 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.162 -1.602 -1.037 1.915 hybrid contribution 0.367 -0.155 -0.124 0.417 sum 0.205 -1.757 -1.161 2.116 Atomic orbital electron populations 1.23547 0.74356 1.05703 1.02671 1.86542 1.25121 1.32196 1.83825 1.21557 0.89680 0.81443 0.71999 1.90613 1.67429 1.35642 1.47377 1.19085 0.88623 0.95621 1.12000 1.19913 0.94431 0.92836 0.94313 1.22397 1.01412 0.90128 0.97973 0.85549 1.23652 1.01920 0.94412 0.98063 1.21895 0.84213 0.95777 0.96789 0.88300 1.45535 1.10595 1.13297 1.65056 1.18041 0.87738 0.81863 0.76612 1.90782 1.40466 1.58463 1.54660 1.21059 0.94783 0.97039 1.06796 1.23387 0.86101 1.00040 0.92240 1.67728 1.25925 1.14738 1.11955 1.22911 0.98930 0.89250 0.93586 1.20740 0.93755 0.97982 1.01689 1.24848 1.10948 0.93191 0.89987 1.86439 1.73071 1.40723 1.37295 0.93899 0.71003 0.87653 0.78796 1.21708 0.97758 0.93911 0.88806 1.23259 1.04157 0.92401 0.95661 1.21299 0.92149 1.00418 1.01628 1.21840 1.01856 0.91943 0.93715 1.21515 0.94010 0.99468 1.00799 1.21655 0.94710 0.97647 0.94323 0.85350 0.91864 0.91677 0.87170 0.91869 0.75052 0.79571 0.82377 0.87922 0.74000 1.20556 1.21854 0.83144 0.90545 0.87262 0.83217 0.82725 0.82870 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -1.24 9.84 -56.13 -0.55 -1.79 16 3 C 0.51 2.87 7.85 70.33 0.55 3.42 16 4 O -0.52 -4.17 12.90 19.93 0.26 -3.91 16 5 C -0.15 -0.52 5.87 -20.10 -0.12 -0.63 16 6 C -0.01 -0.03 5.31 -19.60 -0.10 -0.13 16 7 C -0.10 -0.15 3.15 -10.96 -0.03 -0.19 16 8 H 0.13 0.63 4.88 -14.04 -0.07 0.56 16 9 C -0.14 -0.11 7.25 31.18 0.23 0.12 16 10 C 0.12 0.22 4.29 45.52 0.20 0.41 16 11 H 0.10 0.39 7.50 -2.39 -0.02 0.38 16 12 N -0.69 -1.96 5.22 -442.93 -2.31 -4.27 16 13 C 0.57 4.69 7.78 86.78 0.68 5.37 16 14 O -0.56 -8.50 16.04 -3.87 -0.06 -8.56 16 15 C -0.19 -1.32 5.89 -19.99 -0.12 -1.44 16 16 C 0.14 0.69 10.71 85.02 0.91 1.60 16 17 N -0.50 -4.14 10.35 -194.75 -2.02 -6.16 16 18 C 0.11 0.77 9.84 84.70 0.83 1.60 16 19 C -0.14 -0.78 5.43 -19.81 -0.11 -0.88 16 20 C -0.08 0.08 2.83 71.24 0.20 0.28 16 21 O -0.56 0.19 12.75 -148.98 -1.90 -1.71 16 22 Si 0.78 -2.76 29.82 68.60 2.05 -0.71 16 23 C 0.00 0.03 9.31 22.73 0.21 0.25 16 24 C -0.12 0.06 7.32 31.12 0.23 0.29 16 25 C -0.14 0.29 9.02 22.23 0.20 0.49 16 26 C -0.08 0.30 10.04 22.33 0.22 0.53 16 27 C -0.14 0.46 10.03 22.23 0.22 0.68 16 28 C -0.07 0.00 9.62 22.54 0.22 0.22 16 29 H 0.13 -0.89 8.14 -2.39 -0.02 -0.91 16 30 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.11 -0.27 5.98 -2.39 -0.01 -0.28 16 33 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.41 -0.34 6.77 -92.71 -0.63 -0.97 16 35 H 0.19 -0.26 6.42 -2.91 -0.02 -0.28 16 36 H 0.16 0.75 4.88 -2.91 -0.01 0.74 16 37 H 0.10 -0.54 7.96 -2.39 -0.02 -0.56 16 38 H 0.41 -4.60 8.74 -74.06 -0.65 -5.25 16 39 H -0.28 -0.32 7.11 99.48 0.71 0.38 16 40 H -0.29 -1.13 7.11 99.48 0.71 -0.43 16 41 H 0.15 1.17 7.74 -2.91 -0.02 1.15 16 42 H 0.08 0.02 8.14 -2.38 -0.02 0.00 16 43 H 0.11 -0.32 7.99 -2.38 -0.02 -0.33 16 44 H 0.15 -0.86 6.21 -2.91 -0.02 -0.88 16 45 H 0.16 -1.39 8.06 -2.92 -0.02 -1.42 16 46 H 0.15 -1.21 8.06 -2.91 -0.02 -1.23 16 47 H 0.14 -0.33 7.63 -2.91 -0.02 -0.35 16 Total: 0.00 -24.49 392.75 0.84 -23.65 By element: Atomic # 1 Polarization: -9.43 SS G_CDS: -0.24 Total: -9.67 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 5.61 Total: 13.13 kcal Atomic # 7 Polarization: -6.11 SS G_CDS: -4.33 Total: -10.43 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -2.26 Total: -15.97 kcal Atomic # 14 Polarization: -2.76 SS G_CDS: 2.05 Total: -0.71 kcal Total: -24.49 0.84 -23.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15105874_13287814.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.143 kcal (2) G-P(sol) polarization free energy of solvation -24.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds