Wall clock time and date at job start Sun Mar 7 2021 03:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34716 * 116.99857 * 2 1 4 4 O 1.21470 * 119.99692 * 0.02562 * 3 2 1 5 5 C 1.47731 * 119.99825 * 179.97438 * 3 2 1 6 6 C 1.39607 * 120.14820 * 213.31840 * 5 3 2 7 7 C 1.50704 * 120.07773 * 0.02562 * 6 5 3 8 8 H 1.08997 * 112.84597 * 16.47705 * 7 6 5 9 9 C 1.53781 * 113.61344 * 147.78574 * 7 6 5 10 10 C 1.53779 * 87.07713 * 139.98120 * 9 7 6 11 11 H 1.09003 * 113.61404 * 220.01904 * 10 9 7 12 12 N 1.46501 * 113.69231 * 89.12660 * 10 9 7 13 13 C 1.34779 * 119.99954 * 107.46005 * 12 10 9 14 14 O 1.21619 * 119.99969 * 0.02562 * 13 12 10 15 15 C 1.47374 * 119.99950 * 180.02562 * 13 12 10 16 16 C 1.36423 * 127.19056 * 180.02562 * 15 13 12 17 17 C 1.50702 * 125.80179 * 359.96029 * 16 15 13 18 18 O 1.33657 * 108.39739 * 179.97438 * 16 15 13 19 19 C 1.34219 * 110.90539 * 359.97438 * 18 16 15 20 20 C 1.50703 * 125.43535 * 180.02562 * 19 18 16 21 21 O 1.42903 * 109.46744 * 119.97922 * 20 19 18 22 22 Si 1.86298 * 109.46913 * 359.97438 * 20 19 18 23 23 C 1.34175 * 109.12543 * 359.75421 * 19 18 16 24 24 C 1.53775 * 87.08553 * 334.56701 * 10 9 7 25 25 C 1.37966 * 119.84534 * 179.97438 * 6 5 3 26 26 C 1.38342 * 120.14759 * 0.27120 * 25 6 5 27 27 C 1.38387 * 120.30783 * 359.45249 * 26 25 6 28 28 C 1.37929 * 120.14747 * 0.54968 * 27 26 25 29 29 H 1.09000 * 109.46691 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47280 * 300.00099 * 1 2 3 31 31 H 1.09004 * 109.46845 * 60.00357 * 1 2 3 32 32 H 1.08997 * 113.60953 * 254.53111 * 9 7 6 33 33 H 1.09000 * 113.61227 * 25.43140 * 9 7 6 34 34 H 0.96994 * 120.00168 * 287.46399 * 12 10 9 35 35 H 1.09003 * 109.46360 * 90.00644 * 17 16 15 36 36 H 1.08996 * 109.47044 * 210.00020 * 17 16 15 37 37 H 1.08996 * 109.47415 * 330.00615 * 17 16 15 38 38 H 1.08997 * 109.47093 * 239.97978 * 20 19 18 39 39 H 0.96700 * 113.99550 * 179.97438 * 21 20 19 40 40 H 1.48500 * 110.00115 * 298.67678 * 22 20 19 41 41 H 1.48492 * 110.00277 * 60.00228 * 22 20 19 42 42 H 1.08007 * 127.02432 * 180.25965 * 23 19 18 43 43 H 1.09002 * 113.61552 * 270.88642 * 24 10 9 44 44 H 1.09000 * 113.69609 * 139.99278 * 24 10 9 45 45 H 1.07995 * 119.92021 * 180.02562 * 25 6 5 46 46 H 1.08006 * 119.84330 * 179.72335 * 26 25 6 47 47 H 1.07997 * 119.92693 * 180.29494 * 27 26 25 48 48 H 1.07992 * 120.07366 * 179.74652 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4019 2.2190 0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.1860 2.3219 0.6637 7 6 3.3812 3.3741 1.3822 8 1 2.3495 3.0703 1.5592 9 6 4.0812 3.9406 2.6288 10 6 3.5467 5.3191 2.2058 11 1 4.2625 6.1282 2.3511 12 7 2.2211 5.6280 2.7476 13 6 2.0911 6.5395 3.7319 14 8 3.0741 7.1058 4.1700 15 6 0.7576 6.8499 4.2773 16 6 0.4580 7.7404 5.2664 17 6 1.4492 8.5975 6.0108 18 8 -0.8638 7.7233 5.4633 19 6 -1.4599 6.8497 4.6369 20 6 -2.9396 6.5698 4.5809 21 8 -3.4330 6.8749 3.2749 22 14 -3.8192 7.6250 5.8394 23 6 -0.5286 6.2697 3.8644 24 6 3.5132 4.7774 0.7671 25 6 5.5641 2.3877 0.6607 26 6 6.3042 1.4251 -0.0022 27 6 5.6694 0.3841 -0.6568 28 6 4.2923 0.3062 -0.6618 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 3.6615 3.5787 3.5674 33 1 5.1679 3.8635 2.5922 34 1 1.4370 5.1766 2.3980 35 1 1.5740 9.5458 5.4880 36 1 1.0820 8.7845 7.0199 37 1 2.4083 8.0822 6.0628 38 1 -3.1189 5.5173 4.8003 39 1 -4.3809 6.7178 3.1660 40 1 -3.3378 7.2946 7.2048 41 1 -3.5827 9.0624 5.5514 42 1 -0.6905 5.5266 3.0975 43 1 4.4445 4.9291 0.2215 44 1 2.6356 5.0904 0.2015 45 1 6.0660 3.1947 1.1737 46 1 7.3827 1.4839 -0.0052 47 1 6.2533 -0.3666 -1.1683 48 1 3.7980 -0.5044 -1.1764 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15105874_13308374.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:26:50 Heat of formation + Delta-G solvation = -70.823494 kcal Electronic energy + Delta-G solvation = -33596.807281 eV Core-core repulsion = 28972.592575 eV Total energy + Delta-G solvation = -4624.214706 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.150 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.95729 -42.09518 -41.16580 -40.10129 -38.79831 -37.93714 -37.53945 -34.91304 -34.14829 -33.30310 -32.61676 -31.79016 -29.57081 -28.74595 -26.82422 -26.77568 -25.71375 -24.90779 -24.41555 -23.10691 -22.29221 -21.87430 -20.91444 -20.08639 -19.11283 -18.81307 -18.54404 -18.15958 -17.61218 -17.47934 -17.36847 -17.05050 -16.83785 -16.25386 -16.01064 -15.84444 -15.80145 -15.60822 -15.18876 -15.06437 -14.77354 -14.53616 -14.37943 -14.32226 -14.21801 -14.10429 -14.07113 -13.98597 -13.54608 -13.21768 -13.18774 -13.16323 -12.93183 -12.65085 -12.48133 -12.27619 -12.23166 -11.83885 -11.81920 -11.47276 -11.28230 -11.14117 -11.10067 -10.53018 -10.22517 -10.05044 -9.76217 -9.70442 -5.11168 -0.27681 0.04344 0.30738 0.66073 1.13796 1.29945 1.34596 1.62076 1.67587 1.97419 1.99490 2.08653 2.66166 3.10588 3.34870 3.50817 3.54068 3.56811 3.61688 3.64048 3.68389 3.84196 3.92413 3.99818 4.09068 4.14403 4.21202 4.23817 4.28202 4.32473 4.36096 4.40866 4.43089 4.49355 4.55152 4.64441 4.65300 4.67739 4.77529 4.79571 4.84249 4.93527 4.97385 5.00554 5.06037 5.07735 5.19499 5.29244 5.40704 5.46251 5.57037 5.72405 5.86302 6.33238 6.57998 6.80864 7.00563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.506 3.494 4 O -0.520 6.520 5 C -0.145 4.145 6 C -0.023 4.023 7 C -0.080 4.080 8 H 0.096 0.904 9 C -0.138 4.138 10 C 0.118 3.882 11 H 0.100 0.900 12 N -0.696 5.696 13 C 0.594 3.406 14 O -0.567 6.567 15 C -0.266 4.266 16 C 0.078 3.922 17 C -0.083 4.083 18 O -0.190 6.190 19 C -0.035 4.035 20 C -0.038 4.038 21 O -0.559 6.559 22 Si 0.811 3.189 23 C -0.143 4.143 24 C -0.118 4.118 25 C -0.131 4.131 26 C -0.080 4.080 27 C -0.135 4.135 28 C -0.071 4.071 29 H 0.130 0.870 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.115 0.885 34 H 0.409 0.591 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.127 0.873 39 H 0.415 0.585 40 H -0.293 1.293 41 H -0.308 1.308 42 H 0.178 0.822 43 H 0.112 0.888 44 H 0.071 0.929 45 H 0.152 0.848 46 H 0.156 0.844 47 H 0.155 0.845 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.745 -6.052 -1.574 6.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C 0.352 3.648 4 O -0.410 6.410 5 C -0.146 4.146 6 C -0.023 4.023 7 C -0.099 4.099 8 H 0.114 0.886 9 C -0.176 4.176 10 C 0.013 3.987 11 H 0.118 0.882 12 N -0.346 5.346 13 C 0.384 3.616 14 O -0.448 6.448 15 C -0.270 4.270 16 C 0.026 3.974 17 C -0.139 4.139 18 O -0.089 6.089 19 C -0.082 4.082 20 C -0.147 4.147 21 O -0.371 6.371 22 Si 0.716 3.284 23 C -0.163 4.163 24 C -0.156 4.156 25 C -0.149 4.149 26 C -0.098 4.098 27 C -0.153 4.153 28 C -0.089 4.089 29 H 0.148 0.852 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.133 0.867 34 H 0.245 0.755 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.144 0.856 39 H 0.268 0.732 40 H -0.220 1.220 41 H -0.236 1.236 42 H 0.195 0.805 43 H 0.130 0.870 44 H 0.090 0.910 45 H 0.169 0.831 46 H 0.174 0.826 47 H 0.172 0.828 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.781 -4.490 -0.568 4.864 hybrid contribution -0.231 -0.402 -0.520 0.696 sum -2.011 -4.892 -1.088 5.400 Atomic orbital electron populations 1.23570 0.74377 1.05767 1.02709 1.86589 1.25168 1.32156 1.83748 1.21560 0.89664 0.81526 0.72058 1.90790 1.67418 1.36471 1.46341 1.19106 0.88627 0.99910 1.06998 1.19825 0.94513 0.93065 0.94925 1.21758 0.99297 0.92957 0.95852 0.88649 1.23616 1.02134 0.94769 0.97120 1.21896 0.84511 0.97679 0.94655 0.88224 1.45416 1.10201 1.41610 1.37371 1.17229 0.86719 0.78629 0.79063 1.90742 1.39930 1.53185 1.60966 1.21262 0.94442 1.06458 1.04867 1.23354 0.81326 0.96846 0.95912 1.20736 0.94798 0.98437 0.99939 1.83697 1.20180 1.52087 1.52906 1.21828 0.96016 0.94825 0.95495 1.23983 0.87558 1.08248 0.94948 1.86407 1.31858 1.90392 1.28486 0.94316 0.85907 0.74958 0.73171 1.22783 0.89093 1.02967 1.01413 1.23290 1.04115 0.93180 0.95035 1.21264 0.91998 1.00824 1.00803 1.21815 1.01875 0.92649 0.93472 1.21504 0.93805 0.99684 1.00275 1.21568 0.94844 0.96225 0.96313 0.85232 0.91733 0.91743 0.91665 0.86735 0.75470 0.88241 0.88573 0.87770 0.85554 0.73192 1.22037 1.23638 0.80502 0.87014 0.90988 0.83087 0.82628 0.82783 0.83920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.15 16 2 O -0.36 -1.45 10.31 -56.26 -0.58 -2.03 16 3 C 0.51 3.31 7.22 70.33 0.51 3.82 16 4 O -0.52 -5.11 14.06 19.93 0.28 -4.83 16 5 C -0.15 -0.59 5.83 -20.10 -0.12 -0.71 16 6 C -0.02 -0.05 5.31 -19.60 -0.10 -0.16 16 7 C -0.08 -0.19 3.05 -11.01 -0.03 -0.22 16 8 H 0.10 0.56 5.68 -2.39 -0.01 0.54 16 9 C -0.14 -0.15 7.24 31.12 0.23 0.08 16 10 C 0.12 0.39 4.32 45.51 0.20 0.58 16 11 H 0.10 0.53 7.46 -2.39 -0.02 0.51 16 12 N -0.70 -3.77 5.26 -443.35 -2.33 -6.11 16 13 C 0.59 6.29 7.81 86.65 0.68 6.96 16 14 O -0.57 -8.72 14.44 -4.09 -0.06 -8.78 16 15 C -0.27 -2.61 6.31 -18.99 -0.12 -2.73 16 16 C 0.08 0.78 7.37 25.26 0.19 0.97 16 17 C -0.08 -0.43 9.89 71.24 0.70 0.27 16 18 O -0.19 -2.01 8.89 4.39 0.04 -1.97 16 19 C -0.03 -0.24 6.24 24.76 0.15 -0.09 16 20 C -0.04 0.04 2.97 71.24 0.21 0.25 16 21 O -0.56 1.01 12.84 -148.98 -1.91 -0.91 16 22 Si 0.81 -1.10 32.09 68.60 2.20 1.10 16 23 C -0.14 -0.94 10.46 23.65 0.25 -0.69 16 24 C -0.12 -0.15 7.31 31.12 0.23 0.08 16 25 C -0.13 0.25 8.88 22.23 0.20 0.44 16 26 C -0.08 0.31 10.04 22.33 0.22 0.54 16 27 C -0.13 0.41 10.03 22.23 0.22 0.64 16 28 C -0.07 -0.03 9.63 22.54 0.22 0.19 16 29 H 0.13 -0.92 8.14 -2.39 -0.02 -0.94 16 30 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.06 -0.08 8.14 -2.38 -0.02 -0.10 16 32 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.11 -0.29 6.07 -2.39 -0.01 -0.31 16 34 H 0.41 1.16 7.87 -92.71 -0.73 0.43 16 35 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.10 0.74 6.49 -2.39 -0.02 0.72 16 38 H 0.13 -0.94 7.96 -2.39 -0.02 -0.96 16 39 H 0.41 -5.59 8.74 -74.06 -0.65 -6.24 16 40 H -0.29 -1.54 7.11 99.48 0.71 -0.83 16 41 H -0.31 -2.57 7.11 99.48 0.71 -1.87 16 42 H 0.18 0.31 7.74 -2.91 -0.02 0.29 16 43 H 0.11 -0.17 7.90 -2.39 -0.02 -0.19 16 44 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 45 H 0.15 -0.88 6.34 -2.91 -0.02 -0.90 16 46 H 0.16 -1.40 8.06 -2.91 -0.02 -1.43 16 47 H 0.15 -1.21 8.06 -2.91 -0.02 -1.23 16 48 H 0.14 -0.30 7.99 -2.91 -0.02 -0.33 16 Total: 0.00 -26.56 405.91 2.35 -24.21 By element: Atomic # 1 Polarization: -11.75 SS G_CDS: -0.31 Total: -12.06 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 5.02 Total: 11.36 kcal Atomic # 7 Polarization: -3.77 SS G_CDS: -2.33 Total: -6.11 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -2.23 Total: -18.51 kcal Atomic # 14 Polarization: -1.10 SS G_CDS: 2.20 Total: 1.10 kcal Total: -26.56 2.35 -24.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15105874_13308374.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.610 kcal (2) G-P(sol) polarization free energy of solvation -26.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds